4UY88

Molecular basis for the ribosome functioning as a l-tryptophan sensor - cryo-em structure of a tnac stalled e.coli ribosome
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
94
structure length
94
Chain Sequence
MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLTIVVDGKEIKVKAQDVQRHPYKPKLQHIDFVRA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Molecular Basis for the Ribosome Functioning as an L-Tryptophan Sensor.
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 50S RIBOSOMAL PROTEIN L32
total genus 22
structure length 94
sequence length 94
ec nomenclature
pdb deposition date 2014-08-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
8 PF01386 Ribosomal_L25p Ribosomal L25p family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 4uy8800
4IO9S 2ZJPS 2ZJQS 4WFAS 1GTRA 1DFUP 4H3SA 4JXXA 1O0BA 4WFBS 4WFNS 1NYLA 4U67S 3DLLS 5IZNA 4WF9S 4IOAS 4P2BA 1EUYA 4WCES 4JXZA 5HL7S 1FEUA 5GADW 5JVHS 1EXDA 1ZJWA 4UY88 2RE8A 2ZJRS 5GAEW 3PIOS 5BNZA 2HZ7A 5DM7S 1O0CA 1EUQA 1QTQA 3CF5S 5GAHW 5DM6S 1B75A 1QRSA 3PIPS 5JVGS 1QRUA 1D6KA 1QRTA 1GTSA 3J7ZV 4IOCS 5GAGW 4JYZA 3AIIA 2RD2A
chains in the Genus database with same CATH superfamily
2Z0YA 2ZJQS 4JXXA 4WFNS 1NYLA 1EUYA 2PICA 5HL7S 5JVHS 2ZJRS 5DM7S 3J7ZV 4IOCS 4JYZA 1VHYA 2AE0X 1O0BA 2G6GA 2NWAA 5IZNA 4WF9S 2GAEA 1FEUA 5GADW 2CX8A 2PNWA 5GAEW 1EUQA 1B75A 1QRSA 1QRUA 1D6KA 3AIIA 1UDXA 4IO9S 4E8BA 2EGVA 1DFUP 4WFBS 4U67S 1V6ZA 1EXDA 1VHKA 1ZJWA 4UY88 2RE8A 4L69A 1O0CA 3X1LB 3CF5S 2G5DA 5GAHW 3PIPS 1NXZA 2PI8A 1GTSA 4J3CA 2RD2A 2ZJPS 4WFAS 1GTRA 4H3SA 3W2WB 4V194 3DLLS 4IOAS 2PJJA 4P2BA 4WCES 3KW2A 4JXZA 3CZBA 1Z85A 3PIOS 5BNZA 4H4KA 2HZ7A 1QTQA 3W2VB 2EGWA 5DM6S 5JVGS 1QRTA 5GAGW
chains in the Genus database with same CATH topology
1UDXA 4IO9S 2ZJPS 2ZJQS 4WFAS 1GTRA 1DFUP 4H3SA 3W2WB 4JXXA 4WFBS 1O0BA 4WFNS 1NYLA 4V194 4U67S 3DLLS 5IZNA 4WF9S 4IOAS 4P2BA 1EUYA 4WCES 4JXZA 5HL7S 1FEUA 5GADW 5JVHS 1EXDA 1ZJWA 4UY88 2RE8A 2ZJRS 5GAEW 3PIOS 5BNZA 4H4KA 2HZ7A 5DM7S 1O0CA 1EUQA 1QTQA 3W2VB 3X1LB 3CF5S 5GAHW 5DM6S 1B75A 1QRSA 3PIPS 5JVGS 1QRUA 1D6KA 1QRTA 1GTSA 3J7ZV 4IOCS 5GAGW 4JYZA 3AIIA 2RD2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IO9 S;  2ZJP S;  2ZJQ S;  4WFA S;  1GTR A;  1DFU P;  4H3S A;  4JXX A;  1O0B A;  4WFB S;  4WFN S;  1NYL A;  4U67 S;  3DLL S;  5IZN A;  4WF9 S;  4IOA S;  4P2B A;  1EUY A;  4WCE S;  4JXZ A;  5HL7 S;  1FEU A;  5GAD W;  5JVH S;  1EXD A;  1ZJW A;  4UY8 8;  2RE8 A;  2ZJR S;  5GAE W;  3PIO S;  5BNZ A;  2HZ7 A;  5DM7 S;  1O0C A;  1EUQ A;  1QTQ A;  3CF5 S;  5GAH W;  5DM6 S;  1B75 A;  1QRS A;  3PIP S;  5JVG S;  1QRU A;  1D6K A;  1QRT A;  1GTS A;  3J7Z V;  4IOC S;  5GAG W;  4JYZ A;  3AII A;  2RD2 A; 
#chains in the Genus database with same CATH topology
 2Z0Y A;  2ZJQ S;  4JXX A;  4WFN S;  1NYL A;  1EUY A;  2PIC A;  5HL7 S;  5JVH S;  2ZJR S;  5DM7 S;  3J7Z V;  4IOC S;  4JYZ A;  1VHY A;  2AE0 X;  1O0B A;  2G6G A;  2NWA A;  5IZN A;  4WF9 S;  2GAE A;  1FEU A;  5GAD W;  2CX8 A;  2PNW A;  5GAE W;  1EUQ A;  1B75 A;  1QRS A;  1QRU A;  1D6K A;  3AII A;  1UDX A;  4IO9 S;  4E8B A;  2EGV A;  1DFU P;  4WFB S;  4U67 S;  1V6Z A;  1EXD A;  1VHK A;  1ZJW A;  4UY8 8;  2RE8 A;  4L69 A;  1O0C A;  3X1L B;  3CF5 S;  2G5D A;  5GAH W;  3PIP S;  1NXZ A;  2PI8 A;  1GTS A;  4J3C A;  2RD2 A;  2ZJP S;  4WFA S;  1GTR A;  4H3S A;  3W2W B;  4V19 4;  3DLL S;  4IOA S;  2PJJ A;  4P2B A;  4WCE S;  3KW2 A;  4JXZ A;  3CZB A;  1Z85 A;  3PIO S;  5BNZ A;  4H4K A;  2HZ7 A;  1QTQ A;  3W2V B;  2EGW A;  5DM6 S;  5JVG S;  1QRT A;  5GAG W; 
#chains in the Genus database with same CATH homology
 1UDX A;  4IO9 S;  2ZJP S;  2ZJQ S;  4WFA S;  1GTR A;  1DFU P;  4H3S A;  3W2W B;  4JXX A;  4WFB S;  1O0B A;  4WFN S;  1NYL A;  4V19 4;  4U67 S;  3DLL S;  5IZN A;  4WF9 S;  4IOA S;  4P2B A;  1EUY A;  4WCE S;  4JXZ A;  5HL7 S;  1FEU A;  5GAD W;  5JVH S;  1EXD A;  1ZJW A;  4UY8 8;  2RE8 A;  2ZJR S;  5GAE W;  3PIO S;  5BNZ A;  4H4K A;  2HZ7 A;  5DM7 S;  1O0C A;  1EUQ A;  1QTQ A;  3W2V B;  3X1L B;  3CF5 S;  5GAH W;  5DM6 S;  1B75 A;  1QRS A;  3PIP S;  5JVG S;  1QRU A;  1D6K A;  1QRT A;  1GTS A;  3J7Z V;  4IOC S;  5GAG W;  4JYZ A;  3AII A;  2RD2 A; 
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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