5FQ2 | Genus

Total Genus 25

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	25
sequence length	101
structure length	100
Chain Sequence	KPEVTVRLNVHKVTVLTLQDKIVKEKFAMVAPDVQIEDGKGTILISSEEGETEANNHKLSEFGIRNGSRLQADDFLQDYTLLINILHSEDLGKDVEFEVV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Ligase
source organism	Homo sapiens
publication title	Crystal Structure of Human Sumo E1 Ufd Domain in Complex with Ubc9. rcsb
molecule keywords	SUMO-CONJUGATING ENZYME UBC9
total genus	25
structure length	100
sequence length	101
ec nomenclature	ec 6.3.2.-:
pdb deposition date	2015-12-04

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
B	PF14732	UAE_UbL	Ubiquitin/SUMO-activating enzyme ubiquitin-like domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.290.20	Alpha Beta	Roll	Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A	Ubiquitin-like 2 activating enzyme e1b. Chain: B, domain 3	5fq2B00

5FQ2B 2NVUB 1Y8QB 3KYDB 4W5VB 2LQ7A 1Y8XB 3ONGA 3ONHA 3KYCB 3FN1A 1Y8RB
chains in the Genus database with same CATH superfamily

4X62D 4X64D 2UXCD 3ONGA 4YHHD 4AQYD 4DV0D 3J7AF 5KNLA 4JI2D 3T1YD 3HP7A 4B3RD 1KSVA 3KYDB 2ZM6D 2VQED 5LL6S 1HNWD 4JI3D 4B3SD 4LF6D 1IBLD 1IBMD 4JI8D 2UUBD 2UUCD 1J5ED 3KBGA 5A2QE 5LMUD 1FJGD 4JI1D 4DV1D 4X66D 1XMQD 1JH3A 4YY3D 3FN1A 5IWAD 4JI6D 4DUZD 4LF7D 1N36D 4DR3D 1Y8XB 4JV5D 3CMMA 4DR1D 4DR4D 2ZTBA 2JANA 1H3EA 3JAME 2KTLA 3T1HD 2NVUB 2E5LD 4B3MD 1XNQD 3DH3A 2VQFD 4NXND 3KYCB 4K0KD 3J81E 4GKJD 4DV6D 2K6PA 4JI4D 4LF5D 5LMND 4LFAD 4GKKD 2UUAD 4DV3D 4DV4D 1H3FA 5BR8D 4OUDA 1FKAD 4DR6D 4W5VB 1HNZD 2HHHD 4DV5D 1VIOA 3J80E 5FQ2B 1N32D 4DR5D 2UU9D 4JI7D 4LFCD 4JYAD 4X65D 3ONHA 4B3TD 1C06A 1N34D 1KSKA 4JI5D 4LFBD 2UXBD 2ISTA 1KSLA 4DV7D 1XMOD 4DV2D 1I94D 5FLXE 4LF4D 4NNJA 2LQ7A 4LF9D 4DR2D 4II2A 4OX9D 1IBKD 5IT9E 4NXMD 1HR0D 4LF8D 1DM9A 4LGTA 1HNXD 1XNRD 2F4VD 4KHPD 4DUYD 4DR7D 2I1SA 1Y8QB 1Y8RB 4II3A 4JI0D 1N33D 2UXDD 1P9KA 3OTOD 1C05A
chains in the Genus database with same CATH topology

5FQ2B 2NVUB 1Y8QB 3KYDB 4W5VB 2LQ7A 1Y8XB 3ONGA 3ONHA 3KYCB 3FN1A 1Y8RB
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 5FQ2 B;  2NVU B;  1Y8Q B;  3KYD B;  4W5V B;  2LQ7 A;  1Y8X B;  3ONG A;  3ONH A;  3KYC B;  3FN1 A;  1Y8R B; 
#chains in the Genus database with same CATH topology
 4X62 D;  4X64 D;  2UXC D;  3ONG A;  4YHH D;  4AQY D;  4DV0 D;  3J7A F;  5KNL A;  4JI2 D;  3T1Y D;  3HP7 A;  4B3R D;  1KSV A;  3KYD B;  2ZM6 D;  2VQE D;  5LL6 S;  1HNW D;  4JI3 D;  4B3S D;  4LF6 D;  1IBL D;  1IBM D;  4JI8 D;  2UUB D;  2UUC D;  1J5E D;  3KBG A;  5A2Q E;  5LMU D;  1FJG D;  4JI1 D;  4DV1 D;  4X66 D;  1XMQ D;  1JH3 A;  4YY3 D;  3FN1 A;  5IWA D;  4JI6 D;  4DUZ D;  4LF7 D;  1N36 D;  4DR3 D;  1Y8X B;  4JV5 D;  3CMM A;  4DR1 D;  4DR4 D;  2ZTB A;  2JAN A;  1H3E A;  3JAM E;  2KTL A;  3T1H D;  2NVU B;  2E5L D;  4B3M D;  1XNQ D;  3DH3 A;  2VQF D;  4NXN D;  3KYC B;  4K0K D;  3J81 E;  4GKJ D;  4DV6 D;  2K6P A;  4JI4 D;  4LF5 D;  5LMN D;  4LFA D;  4GKK D;  2UUA D;  4DV3 D;  4DV4 D;  1H3F A;  5BR8 D;  4OUD A;  1FKA D;  4DR6 D;  4W5V B;  1HNZ D;  2HHH D;  4DV5 D;  1VIO A;  3J80 E;  5FQ2 B;  1N32 D;  4DR5 D;  2UU9 D;  4JI7 D;  4LFC D;  4JYA D;  4X65 D;  3ONH A;  4B3T D;  1C06 A;  1N34 D;  1KSK A;  4JI5 D;  4LFB D;  2UXB D;  2IST A;  1KSL A;  4DV7 D;  1XMO D;  4DV2 D;  1I94 D;  5FLX E;  4LF4 D;  4NNJ A;  2LQ7 A;  4LF9 D;  4DR2 D;  4II2 A;  4OX9 D;  1IBK D;  5IT9 E;  4NXM D;  1HR0 D;  4LF8 D;  1DM9 A;  4LGT A;  1HNX D;  1XNR D;  2F4V D;  4KHP D;  4DUY D;  4DR7 D;  2I1S A;  1Y8Q B;  1Y8R B;  4II3 A;  4JI0 D;  1N33 D;  2UXD D;  1P9K A;  3OTO D;  1C05 A; 
#chains in the Genus database with same CATH homology
 5FQ2 B;  2NVU B;  1Y8Q B;  3KYD B;  4W5V B;  2LQ7 A;  1Y8X B;  3ONG A;  3ONH A;  3KYC B;  3FN1 A;  1Y8R B;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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5FQ2B

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations