The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
25
|
sequence length |
101
|
structure length |
100
|
Chain Sequence |
KPEVTVRLNVHKVTVLTLQDKIVKEKFAMVAPDVQIEDGKGTILISSEEGETEANNHKLSEFGIRNGSRLQADDFLQDYTLLINILHSEDLGKDVEFEVV
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal Structure of Human Sumo E1 Ufd Domain in Complex with Ubc9.
rcsb |
| molecule tags |
Ligase
|
| source organism |
Homo sapiens
|
| molecule keywords |
SUMO-CONJUGATING ENZYME UBC9
|
| total genus |
25
|
| structure length |
100
|
| sequence length |
101
|
| ec nomenclature |
ec
6.3.2.-: |
| pdb deposition date | 2015-12-04 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| B | PF14732 | UAE_UbL | Ubiquitin/SUMO-activating enzyme ubiquitin-like domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Roll | Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A | Ubiquitin-like 2 activating enzyme e1b. Chain: B, domain 3 |
#chains in the Genus database with same CATH superfamily 4W5V B; 5FQ2 B; 3ONH A; 2LQ7 A; 3ONG A; 1Y8Q B; 1Y8R B; 3FN1 A; 3KYD B; 3KYC B; 1Y8X B; 2NVU B; #chains in the Genus database with same CATH topology 5LMN D; 3ONG A; 1KSK A; 4DV5 D; 1C06 A; 4X66 D; 3FN1 A; 2I1S A; 4X64 D; 4JI6 D; 2JAN A; 4NNJ A; 4DV0 D; 4JI7 D; 5LMU D; 4DUZ D; 1N34 D; 3ONH A; 2UXC D; 3KYC B; 1Y8X B; 2ZTB A; 4DV1 D; 1HNW D; 4JV5 D; 4LFB D; 4W5V B; 4GKK D; 4LFC D; 4DR4 D; 1P9K A; 1J5E D; 4X65 D; 4II2 A; 5A2Q E; 1Y8Q B; 2UUC D; 4NXN D; 1HR0 D; 5BR8 D; 4JI2 D; 4KHP D; 3HP7 A; 4JI3 D; 4JI0 D; 4K0K D; 1HNX D; 4DR2 D; 3KYD B; 2HHH D; 3J80 E; 4LF7 D; 4YY3 D; 1N33 D; 1XMO D; 4LF9 D; 2K6P A; 1IBK D; 4GKJ D; 1XNR D; 3J7A F; 4DR3 D; 4NXM D; 1DM9 A; 3T1Y D; 5IWA D; 5FLX E; 4DR6 D; 3OTO D; 4DV6 D; 4OX9 D; 4DV3 D; 1XMQ D; 5LL6 S; 4LFA D; 4II3 A; 4YHH D; 4JI1 D; 3T1H D; 4B3S D; 4B3T D; 4OUD A; 3CMM A; 1IBM D; 3J81 E; 2F4V D; 4DV4 D; 4DR5 D; 1IBL D; 4LF6 D; 5FQ2 B; 5KNL A; 5IT9 E; 2LQ7 A; 1FJG D; 4DV2 D; 2NVU B; 4X62 D; 2UUA D; 4LF5 D; 2UUB D; 4DR7 D; 2ZM6 D; 4JI4 D; 4LF8 D; 3DH3 A; 3JAM E; 1KSV A; 2IST A; 1JH3 A; 1XNQ D; 1VIO A; 1HNZ D; 4JI5 D; 3KBG A; 4B3R D; 1N36 D; 2UXB D; 4B3M D; 1FKA D; 1H3E A; 1C05 A; 2E5L D; 4JI8 D; 2VQF D; 4DV7 D; 2VQE D; 4AQY D; 4LGT A; 2KTL A; 4DR1 D; 4JYA D; 1KSL A; 2UU9 D; 1N32 D; 2UXD D; 1Y8R B; 1H3F A; 4DUY D; 1I94 D; 4LF4 D; #chains in the Genus database with same CATH homology 4W5V B; 5FQ2 B; 3ONH A; 2LQ7 A; 3ONG A; 1Y8Q B; 1Y8R B; 3FN1 A; 3KYD B; 3KYC B; 1Y8X B; 2NVU B;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
