5IWA | Genus

Total Genus 57

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	57
sequence length	208
structure length	208
Chain Sequence	GRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRRIYGISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVNEQLVIEFYSR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 208 atoms

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208 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Translation
publication title	Inhibition of translation initiation complex formation by GE81112 unravels a 16S rRNA structural switch involved in P-site decoding. pubmed doi rcsb
molecule keywords	30S ribosomal protein S2
total genus	57
structure length	208
sequence length	208
ec nomenclature
pdb deposition date	2016-03-22

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
D	PF00163	Ribosomal_S4	Ribosomal protein S4/S9 N-terminal domain
D	PF01479	S4	S4 domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1050.10	Mainly Alpha	Orthogonal Bundle	Ribosomal Protein S4 Delta 41; Chain A, domain 1	Ribosomal Protein S4 Delta 41; Chain A, domain 1	5iwaD01
3.10.290.10	Alpha Beta	Roll	Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A	RNA-binding S4 domain	5iwaD02

4JI0D 4JYAD 4YHHD 4DV2D 1H3FA 1N32D 4DR5D 4LF7D 2ZM6D 4DR1D 3T1HD 2F4VD 1JH3A 4B3SD 1IBMD 3DH3A 1KSVA 2HHHD 2UUBD 3OTOD 4LGTA 4LF8D 1C05A 1XNQD 4B3RD 4JI8D 4AQYD 4LFAD 4X65D 4X66D 1HNWD 1N36D 1N33D 4GKKD 4JI6D 4DR4D 1XNRD 1I94D 5BR8D 1HNXD 2KTLA 4OX9D 1VIOA 5IWAD 1FKAD 4DUYD 4DR2D 4DV3D 2UXBD 4DR7D 1J5ED 4DR6D 4GKJD 1IBLD 1HNZD 4DV1D 4OUDA 1IBKD 4LF4D 2JANA 2VQFD 4JI3D 4DV4D 2UUAD 4NXMD 1DM9A 4DV0D 1HR0D 4LF9D 4LFBD 4YY3D 1XMQD 4LF6D 1P9KA 2ISTA 4X62D 1FJGD 4DV7D 4JI4D 4JV5D 4JI7D 2VQED 4B3MD 2E5LD 1XMOD 5LMUD 2UXDD 4JI5D 4K0KD 3HP7A 2UU9D 2UXCD 3T1YD 4JI1D 2UUCD 4KHPD 1KSLA 3KBGA 4DV6D 2K6PA 1N34D 4JI2D 1KSKA 5LMND 4DR3D 4LF5D 4DUZD 4DV5D 4B3TD 1H3EA 4X64D 4NXND 1C06A 4LFCD
chains in the Genus database with same CATH superfamily

4JI0D 4JYAD 4YHHD 4DV2D 1H3FA 1N32D 4DR5D 4LF7D 4II3A 2ZM6D 4DR1D 3T1HD 2F4VD 5FQ2B 1Y8XB 1JH3A 4B3SD 2LQ7A 1IBMD 3DH3A 3KYCB 1KSVA 2HHHD 2UUBD 3OTOD 4LGTA 4LF8D 1C05A 1XNQD 4B3RD 4JI8D 4AQYD 4LFAD 4X65D 4X66D 1HNWD 3J7AF 3ONGA 1N36D 1N33D 1Y8RB 4GKKD 4JI6D 4DR4D 1XNRD 1I94D 5BR8D 1HNXD 2ZTBA 3ONHA 2KTLA 4OX9D 1VIOA 5IWAD 1FKAD 4DUYD 4DR2D 3KYDB 4DV3D 2UXBD 4DR7D 1J5ED 4DR6D 4GKJD 1IBLD 1HNZD 4DV1D 4OUDA 5FLXE 1IBKD 4LF4D 2JANA 2VQFD 5A2QE 5IT9E 4JI3D 4DV4D 2UUAD 4NXMD 2L3NA 2I1SA 1DM9A 4DV0D 1HR0D 4LF9D 4LFBD 4YY3D 1XMQD 4LF6D 1P9KA 2ISTA 4X62D 4NNJA 1FJGD 4DV7D 4JI4D 4JV5D 4JI7D 2VQED 5LL6S 4B3MD 2E5LD 1XMOD 2NVUB 3FN1A 5LMUD 2UXDD 3JAME 4JI5D 4K0KD 3HP7A 2UU9D 3J80E 2UXCD 3T1YD 4JI1D 2UUCD 4KHPD 1KSLA 3CMMA 4DV6D 3KBGA 5KNLA 2K6PA 1N34D 4JI2D 1KSKA 5LMND 4DR3D 4LF5D 4W5VB 4DUZD 4DV5D 4B3TD 4II2A 1H3EA 3J81E 4X64D 4NXND 1C06A 4LFCD 1Y8QB
chains in the Genus database with same CATH topology

4JI0D 4JYAD 4YHHD 4DV2D 1H3FA 1N32D 4DR5D 4LF7D 2ZM6D 4DR1D 3T1HD 2F4VD 1JH3A 4B3SD 1IBMD 3DH3A 1KSVA 2HHHD 2UUBD 3OTOD 4LGTA 4LF8D 1C05A 1XNQD 4B3RD 4JI8D 4AQYD 4LFAD 4X65D 4X66D 1HNWD 1N36D 1N33D 4GKKD 4JI6D 4DR4D 1XNRD 1I94D 5BR8D 1HNXD 2KTLA 4OX9D 1VIOA 5IWAD 1FKAD 4DUYD 4DR2D 4DV3D 2UXBD 4DR7D 1J5ED 4DR6D 4GKJD 1IBLD 1HNZD 4DV1D 4OUDA 1IBKD 4LF4D 2JANA 2VQFD 4JI3D 4DV4D 2UUAD 4NXMD 2L3NA 1DM9A 4DV0D 1HR0D 4LF9D 4LFBD 4YY3D 1XMQD 4LF6D 1P9KA 2ISTA 4X62D 1FJGD 4DV7D 4JI4D 4JV5D 4JI7D 2VQED 4B3MD 2E5LD 1XMOD 5LMUD 2UXDD 4JI5D 4K0KD 3HP7A 2UU9D 2UXCD 3T1YD 4JI1D 2UUCD 4KHPD 1KSLA 3KBGA 4DV6D 2K6PA 1N34D 4JI2D 1KSKA 5LMND 4DR3D 4LF5D 4DUZD 4DV5D 4B3TD 1H3EA 4X64D 4NXND 1C06A 4LFCD
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4JI0 D;  4JYA D;  4YHH D;  4DV2 D;  1H3F A;  1N32 D;  4DR5 D;  4LF7 D;  2ZM6 D;  4DR1 D;  3T1H D;  2F4V D;  1JH3 A;  4B3S D;  1IBM D;  3DH3 A;  1KSV A;  2HHH D;  2UUB D;  3OTO D;  4LGT A;  4LF8 D;  1C05 A;  1XNQ D;  4B3R D;  4JI8 D;  4AQY D;  4LFA D;  4X65 D;  4X66 D;  1HNW D;  1N36 D;  1N33 D;  4GKK D;  4JI6 D;  4DR4 D;  1XNR D;  1I94 D;  5BR8 D;  1HNX D;  2KTL A;  4OX9 D;  1VIO A;  5IWA D;  1FKA D;  4DUY D;  4DR2 D;  4DV3 D;  2UXB D;  4DR7 D;  1J5E D;  4DR6 D;  4GKJ D;  1IBL D;  1HNZ D;  4DV1 D;  4OUD A;  1IBK D;  4LF4 D;  2JAN A;  2VQF D;  4JI3 D;  4DV4 D;  2UUA D;  4NXM D;  1DM9 A;  4DV0 D;  1HR0 D;  4LF9 D;  4LFB D;  4YY3 D;  1XMQ D;  4LF6 D;  1P9K A;  2IST A;  4X62 D;  1FJG D;  4DV7 D;  4JI4 D;  4JV5 D;  4JI7 D;  2VQE D;  4B3M D;  2E5L D;  1XMO D;  5LMU D;  2UXD D;  4JI5 D;  4K0K D;  3HP7 A;  2UU9 D;  2UXC D;  3T1Y D;  4JI1 D;  2UUC D;  4KHP D;  1KSL A;  3KBG A;  4DV6 D;  2K6P A;  1N34 D;  4JI2 D;  1KSK A;  5LMN D;  4DR3 D;  4LF5 D;  4DUZ D;  4DV5 D;  4B3T D;  1H3E A;  4X64 D;  4NXN D;  1C06 A;  4LFC D; 
#chains in the Genus database with same CATH topology
 4JI0 D;  4JYA D;  4YHH D;  4DV2 D;  1H3F A;  1N32 D;  4DR5 D;  4LF7 D;  4II3 A;  2ZM6 D;  4DR1 D;  3T1H D;  2F4V D;  5FQ2 B;  1Y8X B;  1JH3 A;  4B3S D;  2LQ7 A;  1IBM D;  3DH3 A;  3KYC B;  1KSV A;  2HHH D;  2UUB D;  3OTO D;  4LGT A;  4LF8 D;  1C05 A;  1XNQ D;  4B3R D;  4JI8 D;  4AQY D;  4LFA D;  4X65 D;  4X66 D;  1HNW D;  3J7A F;  3ONG A;  1N36 D;  1N33 D;  1Y8R B;  4GKK D;  4JI6 D;  4DR4 D;  1XNR D;  1I94 D;  5BR8 D;  1HNX D;  2ZTB A;  3ONH A;  2KTL A;  4OX9 D;  1VIO A;  5IWA D;  1FKA D;  4DUY D;  4DR2 D;  3KYD B;  4DV3 D;  2UXB D;  4DR7 D;  1J5E D;  4DR6 D;  4GKJ D;  1IBL D;  1HNZ D;  4DV1 D;  4OUD A;  5FLX E;  1IBK D;  4LF4 D;  2JAN A;  2VQF D;  5A2Q E;  5IT9 E;  4JI3 D;  4DV4 D;  2UUA D;  4NXM D;  2L3N A;  2I1S A;  1DM9 A;  4DV0 D;  1HR0 D;  4LF9 D;  4LFB D;  4YY3 D;  1XMQ D;  4LF6 D;  1P9K A;  2IST A;  4X62 D;  4NNJ A;  1FJG D;  4DV7 D;  4JI4 D;  4JV5 D;  4JI7 D;  2VQE D;  5LL6 S;  4B3M D;  2E5L D;  1XMO D;  2NVU B;  3FN1 A;  5LMU D;  2UXD D;  3JAM E;  4JI5 D;  4K0K D;  3HP7 A;  2UU9 D;  3J80 E;  2UXC D;  3T1Y D;  4JI1 D;  2UUC D;  4KHP D;  1KSL A;  3CMM A;  4DV6 D;  3KBG A;  5KNL A;  2K6P A;  1N34 D;  4JI2 D;  1KSK A;  5LMN D;  4DR3 D;  4LF5 D;  4W5V B;  4DUZ D;  4DV5 D;  4B3T D;  4II2 A;  1H3E A;  3J81 E;  4X64 D;  4NXN D;  1C06 A;  4LFC D;  1Y8Q B; 
#chains in the Genus database with same CATH homology
 4JI0 D;  4JYA D;  4YHH D;  4DV2 D;  1H3F A;  1N32 D;  4DR5 D;  4LF7 D;  2ZM6 D;  4DR1 D;  3T1H D;  2F4V D;  1JH3 A;  4B3S D;  1IBM D;  3DH3 A;  1KSV A;  2HHH D;  2UUB D;  3OTO D;  4LGT A;  4LF8 D;  1C05 A;  1XNQ D;  4B3R D;  4JI8 D;  4AQY D;  4LFA D;  4X65 D;  4X66 D;  1HNW D;  1N36 D;  1N33 D;  4GKK D;  4JI6 D;  4DR4 D;  1XNR D;  1I94 D;  5BR8 D;  1HNX D;  2KTL A;  4OX9 D;  1VIO A;  5IWA D;  1FKA D;  4DUY D;  4DR2 D;  4DV3 D;  2UXB D;  4DR7 D;  1J5E D;  4DR6 D;  4GKJ D;  1IBL D;  1HNZ D;  4DV1 D;  4OUD A;  1IBK D;  4LF4 D;  2JAN A;  2VQF D;  4JI3 D;  4DV4 D;  2UUA D;  4NXM D;  2L3N A;  1DM9 A;  4DV0 D;  1HR0 D;  4LF9 D;  4LFB D;  4YY3 D;  1XMQ D;  4LF6 D;  1P9K A;  2IST A;  4X62 D;  1FJG D;  4DV7 D;  4JI4 D;  4JV5 D;  4JI7 D;  2VQE D;  4B3M D;  2E5L D;  1XMO D;  5LMU D;  2UXD D;  4JI5 D;  4K0K D;  3HP7 A;  2UU9 D;  2UXC D;  3T1Y D;  4JI1 D;  2UUC D;  4KHP D;  1KSL A;  3KBG A;  4DV6 D;  2K6P A;  1N34 D;  4JI2 D;  1KSK A;  5LMN D;  4DR3 D;  4LF5 D;  4DUZ D;  4DV5 D;  4B3T D;  1H3E A;  4X64 D;  4NXN D;  1C06 A;  4LFC D;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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5IWAD

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations