5LMU | Genus

Total Genus 51

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	51
sequence length	208
structure length	208
Chain Sequence	GRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRRIYGISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVNEQLVIEFYSR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 208 atoms

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208 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Ribosome
source organism	Thermus thermophilus hb8
publication title	Large-Scale Movements of IF3 and tRNA during Bacterial Translation Initiation. pubmed doi rcsb
molecule keywords	16S ribosomal RNA
total genus	51
structure length	208
sequence length	208
ec nomenclature
pdb deposition date	2016-08-01

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
D	PF00163	Ribosomal_S4	Ribosomal protein S4/S9 N-terminal domain
D	PF01479	S4	S4 domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1050.10	Mainly Alpha	Orthogonal Bundle	Ribosomal Protein S4 Delta 41; Chain A, domain 1	Ribosomal Protein S4 Delta 41; Chain A, domain 1	5lmuD01
3.10.290.10	Alpha Beta	Roll	Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A	RNA-binding S4 domain	5lmuD02

4LF9D 1FJGD 2UXDD 4YY3D 1C06A 4DR4D 4JI7D 1XMOD 4DR5D 4B3MD 4X62D 4LFBD 2KTLA 4JI8D 4DV6D 4B3RD 4LF6D 1HNZD 1N36D 3T1YD 5LMND 4B3TD 1DM9A 5IWAD 4LF5D 1P9KA 4OX9D 1C05A 2UUCD 4JI2D 4DV4D 4LF8D 1H3FA 1N33D 4DV7D 4LF7D 4JV5D 2UXBD 5BR8D 1IBKD 1N34D 1IBMD 4JYAD 4LGTA 1XMQD 2K6PA 2ZM6D 2F4VD 4JI1D 4JI5D 2HHHD 1HNXD 4DV3D 1I94D 4JI0D 4LFCD 4JI3D 4DV5D 3HP7A 4DUYD 2ISTA 2JANA 4DR1D 1XNRD 4LFAD 4GKKD 3T1HD 4DV1D 4GKJD 4X66D 4DR2D 4B3SD 2UUBD 4LF4D 4DR6D 5LMUD 4DV2D 2VQED 1IBLD 2UU9D 4DV0D 2VQFD 1KSLA 4K0KD 1JH3A 4YHHD 4KHPD 4AQYD 4JI4D 4DUZD 4DR3D 1VIOA 1KSKA 3KBGA 4DR7D 1H3EA 3OTOD 2UXCD 1N32D 2E5LD 4OUDA 1KSVA 4X65D 2UUAD 1J5ED 4JI6D 4NXMD 4X64D 3DH3A 4NXND 1HNWD 1HR0D 1FKAD 1XNQD
chains in the Genus database with same CATH superfamily

4LF9D 1FJGD 2UXDD 4YY3D 1C06A 4DR4D 4W5VB 4JI7D 1XMOD 4DR5D 4B3MD 4X62D 4LFBD 2KTLA 4JI8D 4DV6D 4B3RD 4LF6D 1Y8XB 1HNZD 1N36D 3T1YD 5LMND 4B3TD 1DM9A 5FLXE 5IWAD 5A2QE 4LF5D 1P9KA 4OX9D 1C05A 2UUCD 4JI2D 4DV4D 4LF8D 1H3FA 1N33D 4DV7D 4LF7D 4JV5D 2UXBD 5BR8D 1IBKD 1N34D 1IBMD 4JYAD 4LGTA 1XMQD 2K6PA 2ZM6D 3J81E 3FN1A 2F4VD 4JI1D 4JI5D 2HHHD 3ONHA 1HNXD 3J7AF 4DV3D 1I94D 4JI0D 4LFCD 4JI3D 4DV5D 5FQ2B 3HP7A 3ONGA 2ZTBA 4DUYD 2ISTA 2JANA 4DR1D 1XNRD 2NVUB 4II2A 4LFAD 4GKKD 3T1HD 1Y8QB 4DV1D 4GKJD 4X66D 4DR2D 4B3SD 2UUBD 4LF4D 4DR6D 5LMUD 4NNJA 4DV2D 2VQED 1IBLD 2I1SA 2UU9D 4DV0D 5IT9E 2VQFD 1KSLA 1Y8RB 3J80E 4K0KD 1JH3A 4YHHD 2LQ7A 4KHPD 4AQYD 4JI4D 3JAME 4DUZD 4DR3D 1VIOA 1KSKA 3KBGA 5LL6S 4DR7D 1H3EA 3OTOD 2UXCD 2L3NA 1N32D 2E5LD 4OUDA 1KSVA 3KYCB 4X65D 2UUAD 1J5ED 4JI6D 4NXMD 4X64D 3CMMA 4NXND 3DH3A 1HNWD 5KNLA 3KYDB 4II3A 1HR0D 1FKAD 1XNQD
chains in the Genus database with same CATH topology

4LF9D 1FJGD 2UXDD 4YY3D 1C06A 4DR4D 4JI7D 1XMOD 4DR5D 4B3MD 4X62D 4LFBD 2KTLA 4JI8D 4DV6D 4B3RD 4LF6D 1HNZD 1N36D 3T1YD 5LMND 4B3TD 1DM9A 5IWAD 4LF5D 1P9KA 4OX9D 1C05A 2UUCD 4JI2D 4DV4D 4LF8D 1H3FA 1N33D 4DV7D 4LF7D 4JV5D 2UXBD 5BR8D 1IBKD 1N34D 1IBMD 4JYAD 4LGTA 1XMQD 2K6PA 2ZM6D 2F4VD 4JI1D 4JI5D 2HHHD 1HNXD 4DV3D 1I94D 4JI0D 4LFCD 4JI3D 4DV5D 3HP7A 4DUYD 2ISTA 2JANA 4DR1D 1XNRD 4LFAD 4GKKD 3T1HD 4DV1D 4GKJD 4X66D 4DR2D 4B3SD 2UUBD 4LF4D 4DR6D 5LMUD 4DV2D 2VQED 1IBLD 2UU9D 4DV0D 2VQFD 1KSLA 4K0KD 1JH3A 4YHHD 4KHPD 4AQYD 4JI4D 4DUZD 4DR3D 1VIOA 1KSKA 3KBGA 4DR7D 1H3EA 3OTOD 2UXCD 2L3NA 1N32D 2E5LD 4OUDA 1KSVA 4X65D 2UUAD 1J5ED 4JI6D 4NXMD 4X64D 3DH3A 4NXND 1HNWD 1HR0D 1FKAD 1XNQD
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4LF9 D;  1FJG D;  2UXD D;  4YY3 D;  1C06 A;  4DR4 D;  4JI7 D;  1XMO D;  4DR5 D;  4B3M D;  4X62 D;  4LFB D;  2KTL A;  4JI8 D;  4DV6 D;  4B3R D;  4LF6 D;  1HNZ D;  1N36 D;  3T1Y D;  5LMN D;  4B3T D;  1DM9 A;  5IWA D;  4LF5 D;  1P9K A;  4OX9 D;  1C05 A;  2UUC D;  4JI2 D;  4DV4 D;  4LF8 D;  1H3F A;  1N33 D;  4DV7 D;  4LF7 D;  4JV5 D;  2UXB D;  5BR8 D;  1IBK D;  1N34 D;  1IBM D;  4JYA D;  4LGT A;  1XMQ D;  2K6P A;  2ZM6 D;  2F4V D;  4JI1 D;  4JI5 D;  2HHH D;  1HNX D;  4DV3 D;  1I94 D;  4JI0 D;  4LFC D;  4JI3 D;  4DV5 D;  3HP7 A;  4DUY D;  2IST A;  2JAN A;  4DR1 D;  1XNR D;  4LFA D;  4GKK D;  3T1H D;  4DV1 D;  4GKJ D;  4X66 D;  4DR2 D;  4B3S D;  2UUB D;  4LF4 D;  4DR6 D;  5LMU D;  4DV2 D;  2VQE D;  1IBL D;  2UU9 D;  4DV0 D;  2VQF D;  1KSL A;  4K0K D;  1JH3 A;  4YHH D;  4KHP D;  4AQY D;  4JI4 D;  4DUZ D;  4DR3 D;  1VIO A;  1KSK A;  3KBG A;  4DR7 D;  1H3E A;  3OTO D;  2UXC D;  1N32 D;  2E5L D;  4OUD A;  1KSV A;  4X65 D;  2UUA D;  1J5E D;  4JI6 D;  4NXM D;  4X64 D;  3DH3 A;  4NXN D;  1HNW D;  1HR0 D;  1FKA D;  1XNQ D; 
#chains in the Genus database with same CATH topology
 4LF9 D;  1FJG D;  2UXD D;  4YY3 D;  1C06 A;  4DR4 D;  4W5V B;  4JI7 D;  1XMO D;  4DR5 D;  4B3M D;  4X62 D;  4LFB D;  2KTL A;  4JI8 D;  4DV6 D;  4B3R D;  4LF6 D;  1Y8X B;  1HNZ D;  1N36 D;  3T1Y D;  5LMN D;  4B3T D;  1DM9 A;  5FLX E;  5IWA D;  5A2Q E;  4LF5 D;  1P9K A;  4OX9 D;  1C05 A;  2UUC D;  4JI2 D;  4DV4 D;  4LF8 D;  1H3F A;  1N33 D;  4DV7 D;  4LF7 D;  4JV5 D;  2UXB D;  5BR8 D;  1IBK D;  1N34 D;  1IBM D;  4JYA D;  4LGT A;  1XMQ D;  2K6P A;  2ZM6 D;  3J81 E;  3FN1 A;  2F4V D;  4JI1 D;  4JI5 D;  2HHH D;  3ONH A;  1HNX D;  3J7A F;  4DV3 D;  1I94 D;  4JI0 D;  4LFC D;  4JI3 D;  4DV5 D;  5FQ2 B;  3HP7 A;  3ONG A;  2ZTB A;  4DUY D;  2IST A;  2JAN A;  4DR1 D;  1XNR D;  2NVU B;  4II2 A;  4LFA D;  4GKK D;  3T1H D;  1Y8Q B;  4DV1 D;  4GKJ D;  4X66 D;  4DR2 D;  4B3S D;  2UUB D;  4LF4 D;  4DR6 D;  5LMU D;  4NNJ A;  4DV2 D;  2VQE D;  1IBL D;  2I1S A;  2UU9 D;  4DV0 D;  5IT9 E;  2VQF D;  1KSL A;  1Y8R B;  3J80 E;  4K0K D;  1JH3 A;  4YHH D;  2LQ7 A;  4KHP D;  4AQY D;  4JI4 D;  3JAM E;  4DUZ D;  4DR3 D;  1VIO A;  1KSK A;  3KBG A;  5LL6 S;  4DR7 D;  1H3E A;  3OTO D;  2UXC D;  2L3N A;  1N32 D;  2E5L D;  4OUD A;  1KSV A;  3KYC B;  4X65 D;  2UUA D;  1J5E D;  4JI6 D;  4NXM D;  4X64 D;  3CMM A;  4NXN D;  3DH3 A;  1HNW D;  5KNL A;  3KYD B;  4II3 A;  1HR0 D;  1FKA D;  1XNQ D; 
#chains in the Genus database with same CATH homology
 4LF9 D;  1FJG D;  2UXD D;  4YY3 D;  1C06 A;  4DR4 D;  4JI7 D;  1XMO D;  4DR5 D;  4B3M D;  4X62 D;  4LFB D;  2KTL A;  4JI8 D;  4DV6 D;  4B3R D;  4LF6 D;  1HNZ D;  1N36 D;  3T1Y D;  5LMN D;  4B3T D;  1DM9 A;  5IWA D;  4LF5 D;  1P9K A;  4OX9 D;  1C05 A;  2UUC D;  4JI2 D;  4DV4 D;  4LF8 D;  1H3F A;  1N33 D;  4DV7 D;  4LF7 D;  4JV5 D;  2UXB D;  5BR8 D;  1IBK D;  1N34 D;  1IBM D;  4JYA D;  4LGT A;  1XMQ D;  2K6P A;  2ZM6 D;  2F4V D;  4JI1 D;  4JI5 D;  2HHH D;  1HNX D;  4DV3 D;  1I94 D;  4JI0 D;  4LFC D;  4JI3 D;  4DV5 D;  3HP7 A;  4DUY D;  2IST A;  2JAN A;  4DR1 D;  1XNR D;  4LFA D;  4GKK D;  3T1H D;  4DV1 D;  4GKJ D;  4X66 D;  4DR2 D;  4B3S D;  2UUB D;  4LF4 D;  4DR6 D;  5LMU D;  4DV2 D;  2VQE D;  1IBL D;  2UU9 D;  4DV0 D;  2VQF D;  1KSL A;  4K0K D;  1JH3 A;  4YHH D;  4KHP D;  4AQY D;  4JI4 D;  4DUZ D;  4DR3 D;  1VIO A;  1KSK A;  3KBG A;  4DR7 D;  1H3E A;  3OTO D;  2UXC D;  2L3N A;  1N32 D;  2E5L D;  4OUD A;  1KSV A;  4X65 D;  2UUA D;  1J5E D;  4JI6 D;  4NXM D;  4X64 D;  3DH3 A;  4NXN D;  1HNW D;  1HR0 D;  1FKA D;  1XNQ D;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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5LMUD

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations