The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
10
|
sequence length |
94
|
structure length |
94
|
Chain Sequence |
NAMKFEAVVRTELGKGASRRLRLAGQFPAVVYGGEAAPVAVALNHDDIVNQMDKPEFYEAITLVIGGEEVKVKPQDVQRHAFKPKVEHMDFIRI
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The crystal structure of 50S ribosomal protein L25 from Vibrio vulnificus CMCP6
rcsb |
| molecule tags |
Ribosomal protein
|
| source organism |
Vibrio vulnificus (strain cmcp6)
|
| molecule keywords |
50S ribosomal protein L25
|
| total genus |
10
|
| structure length |
94
|
| sequence length |
94
|
| chains with identical sequence |
B, C, D, E, F, G, H
|
| ec nomenclature | |
| pdb deposition date | 2016-03-25 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01386 | Ribosomal_L25p | Ribosomal L25p family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Beta Barrel | Ribosomal Protein L25; Chain P | Ribosomal Protein L25; Chain P |
#chains in the Genus database with same CATH superfamily 3J7Z V; 1NYL A; 4IOC S; 1EUQ A; 5BNZ A; 3DLL S; 1O0C A; 4WF9 S; 4JYZ A; 3PIO S; 5GAG W; 2HZ7 A; 5IZN A; 2ZJQ S; 3CF5 S; 1QTQ A; 5HL7 S; 4WFB S; 1GTR A; 1FEU A; 5GAD W; 1B75 A; 4H3S A; 4UY8 8; 1O0B A; 3AII A; 1D6K A; 1QRU A; 2RD2 A; 1QRS A; 5JVH S; 1EXD A; 5DM6 S; 4JXZ A; 4WCE S; 4P2B A; 1GTS A; 4IOA S; 2ZJR S; 2RE8 A; 2ZJP S; 4IO9 S; 3PIP S; 5GAH W; 1QRT A; 1EUY A; 4U67 S; 4JXX A; 5GAE W; 5JVG S; 4WFN S; 1DFU P; 1ZJW A; 4WFA S; 5DM7 S; #chains in the Genus database with same CATH topology 1O0C A; 1VHK A; 1B75 A; 4UY8 8; 3AII A; 5JVH S; 2PIC A; 2EGV A; 2NWA A; 4IO9 S; 3PIP S; 2GAE A; 2G5D A; 1QRT A; 5JVG S; 1ZJW A; 1UDX A; 4WF9 S; 3PIO S; 1VHY A; 5GAG W; 2HZ7 A; 2ZJQ S; 1GTR A; 5GAD W; 1QRS A; 4L69 A; 3KW2 A; 5GAH W; 3W2V B; 1EUY A; 2PI8 A; 1DFU P; 2AE0 X; 4WFA S; 5DM7 S; 3J7Z V; 1V6Z A; 1NYL A; 4J3C A; 4IOC S; 1EUQ A; 5IZN A; 3CF5 S; 1QTQ A; 2PNW A; 1D6K A; 1QRU A; 2RD2 A; 5DM6 S; 4V19 4; 1GTS A; 4H4K A; 2ZJR S; 3W2W B; 2CX8 A; 4JXX A; 5GAE W; 5BNZ A; 3DLL S; 4E8B A; 4JYZ A; 3X1L B; 3CZB A; 5HL7 S; 4WFB S; 1FEU A; 4H3S A; 2EGW A; 1EXD A; 4JXZ A; 2PJJ A; 4WCE S; 4P2B A; 4IOA S; 2RE8 A; 2ZJP S; 2G6G A; 1Z85 A; 2Z0Y A; 4U67 S; 4WFN S; 1O0B A; 1NXZ A; #chains in the Genus database with same CATH homology 3J7Z V; 1NYL A; 1UDX A; 4IOC S; 5BNZ A; 3DLL S; 1O0C A; 1EUQ A; 4JYZ A; 3X1L B; 3PIO S; 4WF9 S; 5GAG W; 2HZ7 A; 5IZN A; 2ZJQ S; 3CF5 S; 1QTQ A; 5HL7 S; 4WFB S; 1GTR A; 1FEU A; 5GAD W; 1B75 A; 4H3S A; 4UY8 8; 1O0B A; 3AII A; 1D6K A; 1QRU A; 2RD2 A; 1QRS A; 5JVH S; 1EXD A; 5DM6 S; 4JXZ A; 4V19 4; 4WCE S; 4P2B A; 1GTS A; 4H4K A; 4IOA S; 2ZJR S; 2RE8 A; 2ZJP S; 4IO9 S; 3PIP S; 5GAH W; 3W2V B; 3W2W B; 1QRT A; 1EUY A; 4U67 S; 4JXX A; 5GAE W; 5JVG S; 4WFN S; 1DFU P; 1ZJW A; 4WFA S; 5DM7 S;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
