1ALJA

Alkaline phosphatase mutant (h412n)
Total Genus 164
50100150200250300350400020406080100120140160
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
164
Knots found
sequence length
446
structure length
446
Chain Sequence
MPVLENRAAQGDITAPGGARRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREQAQARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQDHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQENTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK
50100150200250300350400400300200100
050100150Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase (phosphoric monoester)
source organism Escherichia coli
publication title Escherichia coli alkaline phosphatase: X-ray structural studies of a mutant enzyme (His-412-->Asn) at one of the catalytically important zinc binding sites.
pubmed rcsb
molecule keywords ALKALINE PHOSPHATASE
total genus 164
structure length 446
sequence length 446
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 1995-06-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1aljA00
3ED4A 2GSNA 4KJDA 3M8ZA 5GOVA 5C66A 4CYSA 4LRBA 4UOOA 3WBHA 1AJBA 2D1GA 3BDHA 3KD8A 1AJDA 1KHKA 3BDFA 4ZG6A 1ANJA 3NKQA 2W8SA 1EW9A 1E3CP 2W5RA 4FDJA 4ZG7A 3UN2A 1EW8A 2IUCA 3SZYA 2IUCB 3LXQA 5LRMA 3WAVA 3MK2A 2W5TA 1KHLA 5AJ9A 5DLVA 4MY4A 2X98A 1ALJA 2W5VA 1ALHA 4NWJA 2XRGA 1ALKA 4MHXA 3DPCA 3A52A 1ELZA 3WAWA 1ED9A 2VQRA 5IJQA 3TG0A 5TJ3A 4LRFA 4ZG9A 1E33P 2W8DA 4KAVA 5INHA 2W5SA 3T01A 3IDDA 2G9YA 4UPHA 4FDIA 1ELYA 4UORA 1SHNA 1EJJA 4LRCA 1ED8A 5L0KA 1SHQA 3WAYA 2ZKTA 3M7VA 4CXKA 3T02A 1FSUA 4N7TA 4GTWA 1N2KA 3WAXA 3NVLA 3BDGA 3BDGB 3NKMA 1ANIA 1HQAA 1KH9A 5LIAA 1N2LA 3UN3A 4TN0A 2GSOA 1EW2A 1KHJA 4KM4A 2GLQA 3MK0A 5EGEA 4QAXA 1URBA 3Q3QA 1Y6VA 1ZEBA 4YR1A 4LREA 1ZEFA 4UPKA 4B56A 1ELXA 5DLTA 3B5QA 4LRDA 3IGZB 1AUKA 1Y7AA 4NWXA 1KH5A 1EI6A 4LQYA 2IFYA 1EQJA 5LRNA 3UN5A 5GRRA 2QZUA 2XR9A 5HRTA 3M8YA 5L0EA 3NKRA 5EGHA 4KJGA 3T00A 1B8JA 3SZZA 3E2DA 5DLWA 4UPLA 4ZGAA 2ANHA 4GTZA 3CMRA 4LR8A 1KH7A 3NKPA 5LQQA 5IJSA 2GA3A 1AJCA 4LR7A 4KAYA 5KXAA 1HDHA 1HJKA 1O98A 3DYCA 3NKOA 3NKNA 2W5QA 3UO0A 2W5XA 4LRAA 4UOPA 4LR9A 3TX0A 4GTYA 4GTXA 1O99A 4CXUA 1ZEDA 5L0BA 3MK1A 3M8WA 2W5WA 1E1ZP 1KHNA 3TWZA 2RH6A 3IGYB 1E2SP 1URAA 1ALIA 4MIVA 5K4PA 2GSUA 1P49A 4CYRA 1KH4A 4CXSA 4LR2A 4UPIA 3UNYA 3OT9A 1K7HA 1AJAA
chains in the Genus database with same CATH superfamily
3ED4A 2GSNA 4KJDA 3M8ZA 5GOVA 5C66A 4CYSA 4LRBA 4UOOA 3WBHA 1AJBA 2D1GA 3BDHA 3KD8A 1AJDA 1KHKA 3BDFA 4ZG6A 1ANJA 3NKQA 2W8SA 1EW9A 1E3CP 2W5RA 4FDJA 4ZG7A 3UN2A 1EW8A 2IUCA 3SZYA 2IUCB 3LXQA 5LRMA 3WAVA 3MK2A 2W5TA 1KHLA 5AJ9A 5DLVA 4MY4A 2X98A 1ALJA 2W5VA 1ALHA 4NWJA 2XRGA 1ALKA 4MHXA 3DPCA 3A52A 1ELZA 3WAWA 1ED9A 2VQRA 5IJQA 3TG0A 5TJ3A 4LRFA 4ZG9A 1E33P 2W8DA 4KAVA 5INHA 2W5SA 3T01A 3IDDA 2G9YA 4UPHA 4FDIA 1ELYA 4UORA 1SHNA 1EJJA 4LRCA 1ED8A 5L0KA 1SHQA 3WAYA 2ZKTA 3M7VA 4CXKA 3T02A 1FSUA 4N7TA 4GTWA 1N2KA 3WAXA 3NVLA 3BDGA 3BDGB 3NKMA 1ANIA 1HQAA 1KH9A 5LIAA 1N2LA 3UN3A 4TN0A 2GSOA 1EW2A 1KHJA 4KM4A 2GLQA 3MK0A 5EGEA 4QAXA 1URBA 3Q3QA 1Y6VA 1ZEBA 4YR1A 4LREA 1ZEFA 4UPKA 4B56A 1ELXA 5DLTA 3B5QA 4LRDA 3IGZB 1AUKA 1Y7AA 4NWXA 1KH5A 1EI6A 4LQYA 2IFYA 1EQJA 5LRNA 3UN5A 5GRRA 2QZUA 2XR9A 5HRTA 3M8YA 5L0EA 3NKRA 5EGHA 4KJGA 3T00A 1B8JA 3SZZA 3E2DA 5DLWA 4UPLA 4ZGAA 2ANHA 4GTZA 3CMRA 4LR8A 1KH7A 3NKPA 5LQQA 5IJSA 2GA3A 1AJCA 4LR7A 4KAYA 5KXAA 1HDHA 1HJKA 1O98A 3DYCA 3NKOA 3NKNA 2W5QA 3UO0A 2W5XA 4LRAA 4UOPA 4LR9A 3TX0A 4GTYA 4GTXA 1O99A 4CXUA 1ZEDA 5L0BA 3MK1A 3M8WA 2W5WA 1E1ZP 1KHNA 3TWZA 2RH6A 3IGYB 1E2SP 1URAA 1ALIA 4MIVA 5K4PA 2GSUA 1P49A 4CYRA 1KH4A 4CXSA 4LR2A 4UPIA 3UNYA 3OT9A 1K7HA 1AJAA
chains in the Genus database with same CATH topology
3ED4A 2GSNA 4KJDA 3M8ZA 5GOVA 5C66A 4CYSA 4LRBA 4UOOA 3WBHA 1AJBA 2D1GA 3BDHA 3KD8A 1AJDA 1KHKA 3BDFA 4ZG6A 1ANJA 3NKQA 2W8SA 1EW9A 1E3CP 2W5RA 4FDJA 4ZG7A 3UN2A 1EW8A 2IUCA 3SZYA 2IUCB 3LXQA 5LRMA 3WAVA 3MK2A 2W5TA 1KHLA 5AJ9A 5DLVA 4MY4A 2X98A 1ALJA 2W5VA 1ALHA 4NWJA 2XRGA 1ALKA 4MHXA 3DPCA 3A52A 1ELZA 3WAWA 1ED9A 2VQRA 5IJQA 3TG0A 5TJ3A 4LRFA 4ZG9A 1E33P 2W8DA 4KAVA 5INHA 2W5SA 3T01A 3IDDA 2G9YA 4UPHA 4FDIA 1ELYA 4UORA 1SHNA 1EJJA 4LRCA 1ED8A 5L0KA 1SHQA 3WAYA 2ZKTA 3M7VA 4CXKA 3T02A 1FSUA 4N7TA 4GTWA 1N2KA 3WAXA 3NVLA 3BDGA 3BDGB 3NKMA 1ANIA 1HQAA 1KH9A 5LIAA 1N2LA 3UN3A 4TN0A 2GSOA 1EW2A 1KHJA 4KM4A 2GLQA 3MK0A 5EGEA 4QAXA 1URBA 3Q3QA 1Y6VA 1ZEBA 4YR1A 4LREA 1ZEFA 4UPKA 4B56A 1ELXA 5DLTA 3B5QA 4LRDA 3IGZB 1AUKA 1Y7AA 4NWXA 1KH5A 1EI6A 4LQYA 2IFYA 1EQJA 5LRNA 3UN5A 5GRRA 2QZUA 2XR9A 5HRTA 3M8YA 5L0EA 3NKRA 5EGHA 4KJGA 3T00A 1B8JA 3SZZA 3E2DA 5DLWA 4UPLA 4ZGAA 2ANHA 4GTZA 3CMRA 4LR8A 1KH7A 3NKPA 5LQQA 5IJSA 2GA3A 1AJCA 4LR7A 4KAYA 5KXAA 1HDHA 1HJKA 1O98A 3DYCA 3NKOA 3NKNA 2W5QA 3UO0A 2W5XA 4LRAA 4UOPA 4LR9A 3TX0A 4GTYA 4GTXA 1O99A 4CXUA 1ZEDA 5L0BA 3MK1A 3M8WA 2W5WA 1E1ZP 1KHNA 3TWZA 2RH6A 3IGYB 1E2SP 1URAA 1ALIA 4MIVA 5K4PA 2GSUA 1P49A 4CYRA 1KH4A 4CXSA 4LR2A 4UPIA 3UNYA 3OT9A 1K7HA 1AJAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ED4 A;  2GSN A;  4KJD A;  3M8Z A;  5GOV A;  5C66 A;  4CYS A;  4LRB A;  4UOO A;  3WBH A;  1AJB A;  2D1G A;  3BDH A;  3KD8 A;  1AJD A;  1KHK A;  3BDF A;  4ZG6 A;  1ANJ A;  3NKQ A;  2W8S A;  1EW9 A;  1E3C P;  2W5R A;  4FDJ A;  4ZG7 A;  3UN2 A;  1EW8 A;  2IUC A;  3SZY A;  2IUC B;  3LXQ A;  5LRM A;  3WAV A;  3MK2 A;  2W5T A;  1KHL A;  5AJ9 A;  5DLV A;  4MY4 A;  2X98 A;  1ALJ A;  2W5V A;  1ALH A;  4NWJ A;  2XRG A;  1ALK A;  4MHX A;  3DPC A;  3A52 A;  1ELZ A;  3WAW A;  1ED9 A;  2VQR A;  5IJQ A;  3TG0 A;  5TJ3 A;  4LRF A;  4ZG9 A;  1E33 P;  2W8D A;  4KAV A;  5INH A;  2W5S A;  3T01 A;  3IDD A;  2G9Y A;  4UPH A;  4FDI A;  1ELY A;  4UOR A;  1SHN A;  1EJJ A;  4LRC A;  1ED8 A;  5L0K A;  1SHQ A;  3WAY A;  2ZKT A;  3M7V A;  4CXK A;  3T02 A;  1FSU A;  4N7T A;  4GTW A;  1N2K A;  3WAX A;  3NVL A;  3BDG A;  3BDG B;  3NKM A;  1ANI A;  1HQA A;  1KH9 A;  5LIA A;  1N2L A;  3UN3 A;  4TN0 A;  2GSO A;  1EW2 A;  1KHJ A;  4KM4 A;  2GLQ A;  3MK0 A;  5EGE A;  4QAX A;  1URB A;  3Q3Q A;  1Y6V A;  1ZEB A;  4YR1 A;  4LRE A;  1ZEF A;  4UPK A;  4B56 A;  1ELX A;  5DLT A;  3B5Q A;  4LRD A;  3IGZ B;  1AUK A;  1Y7A A;  4NWX A;  1KH5 A;  1EI6 A;  4LQY A;  2IFY A;  1EQJ A;  5LRN A;  3UN5 A;  5GRR A;  2QZU A;  2XR9 A;  5HRT A;  3M8Y A;  5L0E A;  3NKR A;  5EGH A;  4KJG A;  3T00 A;  1B8J A;  3SZZ A;  3E2D A;  5DLW A;  4UPL A;  4ZGA A;  2ANH A;  4GTZ A;  3CMR A;  4LR8 A;  1KH7 A;  3NKP A;  5LQQ A;  5IJS A;  2GA3 A;  1AJC A;  4LR7 A;  4KAY A;  5KXA A;  1HDH A;  1HJK A;  1O98 A;  3DYC A;  3NKO A;  3NKN A;  2W5Q A;  3UO0 A;  2W5X A;  4LRA A;  4UOP A;  4LR9 A;  3TX0 A;  4GTY A;  4GTX A;  1O99 A;  4CXU A;  1ZED A;  5L0B A;  3MK1 A;  3M8W A;  2W5W A;  1E1Z P;  1KHN A;  3TWZ A;  2RH6 A;  3IGY B;  1E2S P;  1URA A;  1ALI A;  4MIV A;  5K4P A;  2GSU A;  1P49 A;  4CYR A;  1KH4 A;  4CXS A;  4LR2 A;  4UPI A;  3UNY A;  3OT9 A;  1K7H A;  1AJA A; 
#chains in the Genus database with same CATH topology
 3ED4 A;  2GSN A;  4KJD A;  3M8Z A;  5GOV A;  5C66 A;  4CYS A;  4LRB A;  4UOO A;  3WBH A;  1AJB A;  2D1G A;  3BDH A;  3KD8 A;  1AJD A;  1KHK A;  3BDF A;  4ZG6 A;  1ANJ A;  3NKQ A;  2W8S A;  1EW9 A;  1E3C P;  2W5R A;  4FDJ A;  4ZG7 A;  3UN2 A;  1EW8 A;  2IUC A;  3SZY A;  2IUC B;  3LXQ A;  5LRM A;  3WAV A;  3MK2 A;  2W5T A;  1KHL A;  5AJ9 A;  5DLV A;  4MY4 A;  2X98 A;  1ALJ A;  2W5V A;  1ALH A;  4NWJ A;  2XRG A;  1ALK A;  4MHX A;  3DPC A;  3A52 A;  1ELZ A;  3WAW A;  1ED9 A;  2VQR A;  5IJQ A;  3TG0 A;  5TJ3 A;  4LRF A;  4ZG9 A;  1E33 P;  2W8D A;  4KAV A;  5INH A;  2W5S A;  3T01 A;  3IDD A;  2G9Y A;  4UPH A;  4FDI A;  1ELY A;  4UOR A;  1SHN A;  1EJJ A;  4LRC A;  1ED8 A;  5L0K A;  1SHQ A;  3WAY A;  2ZKT A;  3M7V A;  4CXK A;  3T02 A;  1FSU A;  4N7T A;  4GTW A;  1N2K A;  3WAX A;  3NVL A;  3BDG A;  3BDG B;  3NKM A;  1ANI A;  1HQA A;  1KH9 A;  5LIA A;  1N2L A;  3UN3 A;  4TN0 A;  2GSO A;  1EW2 A;  1KHJ A;  4KM4 A;  2GLQ A;  3MK0 A;  5EGE A;  4QAX A;  1URB A;  3Q3Q A;  1Y6V A;  1ZEB A;  4YR1 A;  4LRE A;  1ZEF A;  4UPK A;  4B56 A;  1ELX A;  5DLT A;  3B5Q A;  4LRD A;  3IGZ B;  1AUK A;  1Y7A A;  4NWX A;  1KH5 A;  1EI6 A;  4LQY A;  2IFY A;  1EQJ A;  5LRN A;  3UN5 A;  5GRR A;  2QZU A;  2XR9 A;  5HRT A;  3M8Y A;  5L0E A;  3NKR A;  5EGH A;  4KJG A;  3T00 A;  1B8J A;  3SZZ A;  3E2D A;  5DLW A;  4UPL A;  4ZGA A;  2ANH A;  4GTZ A;  3CMR A;  4LR8 A;  1KH7 A;  3NKP A;  5LQQ A;  5IJS A;  2GA3 A;  1AJC A;  4LR7 A;  4KAY A;  5KXA A;  1HDH A;  1HJK A;  1O98 A;  3DYC A;  3NKO A;  3NKN A;  2W5Q A;  3UO0 A;  2W5X A;  4LRA A;  4UOP A;  4LR9 A;  3TX0 A;  4GTY A;  4GTX A;  1O99 A;  4CXU A;  1ZED A;  5L0B A;  3MK1 A;  3M8W A;  2W5W A;  1E1Z P;  1KHN A;  3TWZ A;  2RH6 A;  3IGY B;  1E2S P;  1URA A;  1ALI A;  4MIV A;  5K4P A;  2GSU A;  1P49 A;  4CYR A;  1KH4 A;  4CXS A;  4LR2 A;  4UPI A;  3UNY A;  3OT9 A;  1K7H A;  1AJA A; 
#chains in the Genus database with same CATH homology
 3ED4 A;  2GSN A;  4KJD A;  3M8Z A;  5GOV A;  5C66 A;  4CYS A;  4LRB A;  4UOO A;  3WBH A;  1AJB A;  2D1G A;  3BDH A;  3KD8 A;  1AJD A;  1KHK A;  3BDF A;  4ZG6 A;  1ANJ A;  3NKQ A;  2W8S A;  1EW9 A;  1E3C P;  2W5R A;  4FDJ A;  4ZG7 A;  3UN2 A;  1EW8 A;  2IUC A;  3SZY A;  2IUC B;  3LXQ A;  5LRM A;  3WAV A;  3MK2 A;  2W5T A;  1KHL A;  5AJ9 A;  5DLV A;  4MY4 A;  2X98 A;  1ALJ A;  2W5V A;  1ALH A;  4NWJ A;  2XRG A;  1ALK A;  4MHX A;  3DPC A;  3A52 A;  1ELZ A;  3WAW A;  1ED9 A;  2VQR A;  5IJQ A;  3TG0 A;  5TJ3 A;  4LRF A;  4ZG9 A;  1E33 P;  2W8D A;  4KAV A;  5INH A;  2W5S A;  3T01 A;  3IDD A;  2G9Y A;  4UPH A;  4FDI A;  1ELY A;  4UOR A;  1SHN A;  1EJJ A;  4LRC A;  1ED8 A;  5L0K A;  1SHQ A;  3WAY A;  2ZKT A;  3M7V A;  4CXK A;  3T02 A;  1FSU A;  4N7T A;  4GTW A;  1N2K A;  3WAX A;  3NVL A;  3BDG A;  3BDG B;  3NKM A;  1ANI A;  1HQA A;  1KH9 A;  5LIA A;  1N2L A;  3UN3 A;  4TN0 A;  2GSO A;  1EW2 A;  1KHJ A;  4KM4 A;  2GLQ A;  3MK0 A;  5EGE A;  4QAX A;  1URB A;  3Q3Q A;  1Y6V A;  1ZEB A;  4YR1 A;  4LRE A;  1ZEF A;  4UPK A;  4B56 A;  1ELX A;  5DLT A;  3B5Q A;  4LRD A;  3IGZ B;  1AUK A;  1Y7A A;  4NWX A;  1KH5 A;  1EI6 A;  4LQY A;  2IFY A;  1EQJ A;  5LRN A;  3UN5 A;  5GRR A;  2QZU A;  2XR9 A;  5HRT A;  3M8Y A;  5L0E A;  3NKR A;  5EGH A;  4KJG A;  3T00 A;  1B8J A;  3SZZ A;  3E2D A;  5DLW A;  4UPL A;  4ZGA A;  2ANH A;  4GTZ A;  3CMR A;  4LR8 A;  1KH7 A;  3NKP A;  5LQQ A;  5IJS A;  2GA3 A;  1AJC A;  4LR7 A;  4KAY A;  5KXA A;  1HDH A;  1HJK A;  1O98 A;  3DYC A;  3NKO A;  3NKN A;  2W5Q A;  3UO0 A;  2W5X A;  4LRA A;  4UOP A;  4LR9 A;  3TX0 A;  4GTY A;  4GTX A;  1O99 A;  4CXU A;  1ZED A;  5L0B A;  3MK1 A;  3M8W A;  2W5W A;  1E1Z P;  1KHN A;  3TWZ A;  2RH6 A;  3IGY B;  1E2S P;  1URA A;  1ALI A;  4MIV A;  5K4P A;  2GSU A;  1P49 A;  4CYR A;  1KH4 A;  4CXS A;  4LR2 A;  4UPI A;  3UNY A;  3OT9 A;  1K7H A;  1AJA A; 
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