4UOPA

Crystal structure of the lipoteichoic acid synthase ltap from listeria monocytogenes
Total Genus 150
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
150
Knots found
sequence length
408
structure length
408
Chain Sequence
ITAKNVNDIKGVSVKSNPDYFGAAKGKNLIIVQLESFQRNLTNVKINGQSITPTLDGLQNETMYSNQFFQTVSKSNTADAEWSVYTSTFPSGYYTNTQTYGDRVIPSMPRLLGKNDYKTATFHTNDASFYNRDEFYPAVGFDKFYDRKFFGDEDVIGFSPSDEVLYNKAFPILEEQYKNNQKFYAQLISVSSHMPFDIPKDKQEIDLPSDLKDTELGNYFEAVHYADKQLGEFIQKLKDSGIWDDSVVVFYGDHHIIKTDQLPEEQKKYVNRSTQLKAEPADDYRIPFFLHYPGMENPGEIKNVGGEIDIMPTVMNLLGIKTGDQIMFGTDILNSSNNYVPERYTMPEGSYFTNSYMYQPDESFETGAATNYDGTNKELSSDVKKRFDASRKLLQYSDSYVNNLPLRN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords LIPOTEICHOIC ACID PRIMASE
publication title Structural and mechanistic insight into the Listeria monocytogenes two-enzyme lipoteichoic acid synthesis system.
pubmed doi rcsb
source organism Listeria monocytogenes
molecule tags Transferase
total genus 150
structure length 408
sequence length 408
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 2.7.8.-:
pdb deposition date 2014-06-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 4uopA02
1EW8A 4UOOA 4LQYA 1ANIA 3M8YA 4CXSA 1O98A 4MIVA 4QAXA 4ZG7A 1N2KA 4NWJA 3WAWA 4FDJA 3T01A 3DPCA 3TX0A 4CXUA 3BDHA 1Y6VA 4CXKA 3DYCA 1KH7A 3TG0A 5DLWA 5DLTA 1ALHA 4KAVA 3SZZA 5L0BA 1FSUA 1ED9A 3UN3A 1ELZA 2IUCA 3MK0A 3BDFA 3BDGB 4LRDA 4LR7A 3WAYA 3LXQA 4MHXA 4UPHA 4UPLA 2GLQA 1URBA 3BDGA 2W5RA 4ZGAA 1EW9A 3Q3QA 4CYSA 5K4PA 4LRFA 1ED8A 2G9YA 5EGHA 1KH4A 2GSOA 1KH9A 3WBHA 3KD8A 5C66A 4GTXA 4LRCA 1EQJA 1URAA 4LR2A 4UPKA 3ED4A 1AUKA 1K7HA 4LR8A 4UORA 3UN2A 2W8SA 2ANHA 4B56A 1AJCA 3IGYB 1ALKA 4ZG9A 3IDDA 4KM4A 4KAYA 1AJAA 3NKOA 2QZUA 3IGZB 5LQQA 2W5XA 1KHLA 3A52A 5HRTA 2W5VA 4LR9A 3MK2A 4KJGA 1N2LA 3NKQA 1AJBA 4KJDA 3M7VA 4GTZA 5DLVA 1ANJA 2XRGA 1KHKA 4CYRA 1ZEBA 4GTWA 3WAVA 5LIAA 1HDHA 4ZG6A 3E2DA 4LRBA 1E2SP 1B8JA 2XR9A 1AJDA 2X98A 4FDIA 4UOPA 4UPIA 4N7TA 3T00A 4NWXA 4YR1A 1Y7AA 1EJJA 1EI6A 2D1GA 2W5TA 3OT9A 5LRNA 5L0EA 2IUCB 2W5QA 3SZYA 1E1ZP 1ELXA 1EW2A 3TWZA 1SHNA 3UO0A 5GRRA 5IJQA 3UNYA 1HJKA 1ELYA 2ZKTA 3WAXA 1ALIA 1O99A 3M8ZA 1HQAA 5INHA 5TJ3A 5LRMA 2W5SA 4TN0A 5IJSA 2IFYA 5L0KA 3NKRA 3NKMA 1E33P 5GOVA 5EGEA 3UN5A 1KHNA 1KHJA 2W5WA 1SHQA 3MK1A 2W8DA 3NKNA 4LREA 2GSUA 3NVLA 3B5QA 5AJ9A 1KH5A 1P49A 2RH6A 2GA3A 5KXAA 1E3CP 3M8WA 2GSNA 4GTYA 4MY4A 1ALJA 3CMRA 1ZEFA 1ZEDA 3T02A 3NKPA 4LRAA 2VQRA
chains in the Genus database with same CATH superfamily
1EW8A 4UOOA 4LQYA 1ANIA 3M8YA 4CXSA 1O98A 4MIVA 4QAXA 4ZG7A 1N2KA 4NWJA 3WAWA 4FDJA 3T01A 3DPCA 3TX0A 4CXUA 3BDHA 1Y6VA 4CXKA 3DYCA 1KH7A 3TG0A 5DLWA 5DLTA 1ALHA 4KAVA 3SZZA 5L0BA 1FSUA 1ED9A 3UN3A 1ELZA 2IUCA 3MK0A 3BDFA 3BDGB 4LRDA 4LR7A 3WAYA 3LXQA 4MHXA 4UPHA 4UPLA 2GLQA 1URBA 3BDGA 2W5RA 4ZGAA 1EW9A 3Q3QA 4CYSA 5K4PA 4LRFA 1ED8A 2G9YA 5EGHA 1KH4A 2GSOA 1KH9A 3WBHA 3KD8A 5C66A 4GTXA 4LRCA 1EQJA 1URAA 4LR2A 4UPKA 3ED4A 1AUKA 1K7HA 4LR8A 4UORA 3UN2A 2W8SA 2ANHA 4B56A 1AJCA 3IGYB 1ALKA 4ZG9A 3IDDA 4KM4A 4KAYA 1AJAA 3NKOA 2QZUA 3IGZB 5LQQA 2W5XA 1KHLA 3A52A 5HRTA 2W5VA 4LR9A 3MK2A 4KJGA 1N2LA 3NKQA 1AJBA 4KJDA 3M7VA 4GTZA 5DLVA 1ANJA 2XRGA 1KHKA 4CYRA 1ZEBA 4GTWA 3WAVA 5LIAA 1HDHA 4ZG6A 3E2DA 4LRBA 1E2SP 1B8JA 2XR9A 1AJDA 2X98A 4FDIA 4UOPA 4UPIA 4N7TA 3T00A 4NWXA 4YR1A 1Y7AA 1EJJA 1EI6A 2D1GA 2W5TA 3OT9A 5LRNA 5L0EA 2IUCB 2W5QA 3SZYA 1E1ZP 1ELXA 1EW2A 3TWZA 1SHNA 3UO0A 5GRRA 5IJQA 3UNYA 1HJKA 1ELYA 2ZKTA 3WAXA 1ALIA 1O99A 3M8ZA 1HQAA 5INHA 5TJ3A 5LRMA 2W5SA 4TN0A 5IJSA 2IFYA 5L0KA 3NKRA 3NKMA 1E33P 5GOVA 5EGEA 3UN5A 1KHNA 1KHJA 2W5WA 1SHQA 3MK1A 2W8DA 3NKNA 4LREA 2GSUA 3NVLA 3B5QA 5AJ9A 1KH5A 1P49A 2RH6A 2GA3A 5KXAA 1E3CP 3M8WA 2GSNA 4GTYA 4MY4A 1ALJA 3CMRA 1ZEFA 1ZEDA 3T02A 3NKPA 4LRAA 2VQRA
chains in the Genus database with same CATH topology
1EW8A 4UOOA 4LQYA 1ANIA 3M8YA 4CXSA 1O98A 4MIVA 4QAXA 4ZG7A 1N2KA 4NWJA 3WAWA 4FDJA 3T01A 3DPCA 3TX0A 4CXUA 3BDHA 1Y6VA 4CXKA 3DYCA 1KH7A 3TG0A 5DLWA 5DLTA 1ALHA 4KAVA 3SZZA 5L0BA 1FSUA 1ED9A 3UN3A 1ELZA 2IUCA 3MK0A 3BDFA 3BDGB 4LRDA 4LR7A 3WAYA 3LXQA 4MHXA 4UPHA 4UPLA 2GLQA 1URBA 3BDGA 2W5RA 4ZGAA 1EW9A 3Q3QA 4CYSA 5K4PA 4LRFA 1ED8A 2G9YA 5EGHA 1KH4A 2GSOA 1KH9A 3WBHA 3KD8A 5C66A 4GTXA 4LRCA 1EQJA 1URAA 4LR2A 4UPKA 3ED4A 1AUKA 1K7HA 4LR8A 4UORA 3UN2A 2W8SA 2ANHA 4B56A 1AJCA 3IGYB 1ALKA 4ZG9A 3IDDA 4KM4A 4KAYA 1AJAA 3NKOA 2QZUA 3IGZB 5LQQA 2W5XA 1KHLA 3A52A 5HRTA 2W5VA 4LR9A 3MK2A 4KJGA 1N2LA 3NKQA 1AJBA 4KJDA 3M7VA 4GTZA 5DLVA 1ANJA 2XRGA 1KHKA 4CYRA 1ZEBA 4GTWA 3WAVA 5LIAA 1HDHA 4ZG6A 3E2DA 4LRBA 1E2SP 1B8JA 2XR9A 1AJDA 2X98A 4FDIA 4UOPA 4UPIA 4N7TA 3T00A 4NWXA 4YR1A 1Y7AA 1EJJA 1EI6A 2D1GA 2W5TA 3OT9A 5LRNA 5L0EA 2IUCB 2W5QA 3SZYA 1E1ZP 1ELXA 1EW2A 3TWZA 1SHNA 3UO0A 5GRRA 5IJQA 3UNYA 1HJKA 1ELYA 2ZKTA 3WAXA 1ALIA 1O99A 3M8ZA 1HQAA 5INHA 5TJ3A 5LRMA 2W5SA 4TN0A 5IJSA 2IFYA 5L0KA 3NKRA 3NKMA 1E33P 5GOVA 5EGEA 3UN5A 1KHNA 1KHJA 2W5WA 1SHQA 3MK1A 2W8DA 3NKNA 4LREA 2GSUA 3NVLA 3B5QA 5AJ9A 1KH5A 1P49A 2RH6A 2GA3A 5KXAA 1E3CP 3M8WA 2GSNA 4GTYA 4MY4A 1ALJA 3CMRA 1ZEFA 1ZEDA 3T02A 3NKPA 4LRAA 2VQRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EW8 A;  4UOO A;  4LQY A;  1ANI A;  3M8Y A;  4CXS A;  1O98 A;  4MIV A;  4QAX A;  4ZG7 A;  1N2K A;  4NWJ A;  3WAW A;  4FDJ A;  3T01 A;  3DPC A;  3TX0 A;  4CXU A;  3BDH A;  1Y6V A;  4CXK A;  3DYC A;  1KH7 A;  3TG0 A;  5DLW A;  5DLT A;  1ALH A;  4KAV A;  3SZZ A;  5L0B A;  1FSU A;  1ED9 A;  3UN3 A;  1ELZ A;  2IUC A;  3MK0 A;  3BDF A;  3BDG B;  4LRD A;  4LR7 A;  3WAY A;  3LXQ A;  4MHX A;  4UPH A;  4UPL A;  2GLQ A;  1URB A;  3BDG A;  2W5R A;  4ZGA A;  1EW9 A;  3Q3Q A;  4CYS A;  5K4P A;  4LRF A;  1ED8 A;  2G9Y A;  5EGH A;  1KH4 A;  2GSO A;  1KH9 A;  3WBH A;  3KD8 A;  5C66 A;  4GTX A;  4LRC A;  1EQJ A;  1URA A;  4LR2 A;  4UPK A;  3ED4 A;  1AUK A;  1K7H A;  4LR8 A;  4UOR A;  3UN2 A;  2W8S A;  2ANH A;  4B56 A;  1AJC A;  3IGY B;  1ALK A;  4ZG9 A;  3IDD A;  4KM4 A;  4KAY A;  1AJA A;  3NKO A;  2QZU A;  3IGZ B;  5LQQ A;  2W5X A;  1KHL A;  3A52 A;  5HRT A;  2W5V A;  4LR9 A;  3MK2 A;  4KJG A;  1N2L A;  3NKQ A;  1AJB A;  4KJD A;  3M7V A;  4GTZ A;  5DLV A;  1ANJ A;  2XRG A;  1KHK A;  4CYR A;  1ZEB A;  4GTW A;  3WAV A;  5LIA A;  1HDH A;  4ZG6 A;  3E2D A;  4LRB A;  1E2S P;  1B8J A;  2XR9 A;  1AJD A;  2X98 A;  4FDI A;  4UOP A;  4UPI A;  4N7T A;  3T00 A;  4NWX A;  4YR1 A;  1Y7A A;  1EJJ A;  1EI6 A;  2D1G A;  2W5T A;  3OT9 A;  5LRN A;  5L0E A;  2IUC B;  2W5Q A;  3SZY A;  1E1Z P;  1ELX A;  1EW2 A;  3TWZ A;  1SHN A;  3UO0 A;  5GRR A;  5IJQ A;  3UNY A;  1HJK A;  1ELY A;  2ZKT A;  3WAX A;  1ALI A;  1O99 A;  3M8Z A;  1HQA A;  5INH A;  5TJ3 A;  5LRM A;  2W5S A;  4TN0 A;  5IJS A;  2IFY A;  5L0K A;  3NKR A;  3NKM A;  1E33 P;  5GOV A;  5EGE A;  3UN5 A;  1KHN A;  1KHJ A;  2W5W A;  1SHQ A;  3MK1 A;  2W8D A;  3NKN A;  4LRE A;  2GSU A;  3NVL A;  3B5Q A;  5AJ9 A;  1KH5 A;  1P49 A;  2RH6 A;  2GA3 A;  5KXA A;  1E3C P;  3M8W A;  2GSN A;  4GTY A;  4MY4 A;  1ALJ A;  3CMR A;  1ZEF A;  1ZED A;  3T02 A;  3NKP A;  4LRA A;  2VQR A; 
#chains in the Genus database with same CATH topology
 1EW8 A;  4UOO A;  4LQY A;  1ANI A;  3M8Y A;  4CXS A;  1O98 A;  4MIV A;  4QAX A;  4ZG7 A;  1N2K A;  4NWJ A;  3WAW A;  4FDJ A;  3T01 A;  3DPC A;  3TX0 A;  4CXU A;  3BDH A;  1Y6V A;  4CXK A;  3DYC A;  1KH7 A;  3TG0 A;  5DLW A;  5DLT A;  1ALH A;  4KAV A;  3SZZ A;  5L0B A;  1FSU A;  1ED9 A;  3UN3 A;  1ELZ A;  2IUC A;  3MK0 A;  3BDF A;  3BDG B;  4LRD A;  4LR7 A;  3WAY A;  3LXQ A;  4MHX A;  4UPH A;  4UPL A;  2GLQ A;  1URB A;  3BDG A;  2W5R A;  4ZGA A;  1EW9 A;  3Q3Q A;  4CYS A;  5K4P A;  4LRF A;  1ED8 A;  2G9Y A;  5EGH A;  1KH4 A;  2GSO A;  1KH9 A;  3WBH A;  3KD8 A;  5C66 A;  4GTX A;  4LRC A;  1EQJ A;  1URA A;  4LR2 A;  4UPK A;  3ED4 A;  1AUK A;  1K7H A;  4LR8 A;  4UOR A;  3UN2 A;  2W8S A;  2ANH A;  4B56 A;  1AJC A;  3IGY B;  1ALK A;  4ZG9 A;  3IDD A;  4KM4 A;  4KAY A;  1AJA A;  3NKO A;  2QZU A;  3IGZ B;  5LQQ A;  2W5X A;  1KHL A;  3A52 A;  5HRT A;  2W5V A;  4LR9 A;  3MK2 A;  4KJG A;  1N2L A;  3NKQ A;  1AJB A;  4KJD A;  3M7V A;  4GTZ A;  5DLV A;  1ANJ A;  2XRG A;  1KHK A;  4CYR A;  1ZEB A;  4GTW A;  3WAV A;  5LIA A;  1HDH A;  4ZG6 A;  3E2D A;  4LRB A;  1E2S P;  1B8J A;  2XR9 A;  1AJD A;  2X98 A;  4FDI A;  4UOP A;  4UPI A;  4N7T A;  3T00 A;  4NWX A;  4YR1 A;  1Y7A A;  1EJJ A;  1EI6 A;  2D1G A;  2W5T A;  3OT9 A;  5LRN A;  5L0E A;  2IUC B;  2W5Q A;  3SZY A;  1E1Z P;  1ELX A;  1EW2 A;  3TWZ A;  1SHN A;  3UO0 A;  5GRR A;  5IJQ A;  3UNY A;  1HJK A;  1ELY A;  2ZKT A;  3WAX A;  1ALI A;  1O99 A;  3M8Z A;  1HQA A;  5INH A;  5TJ3 A;  5LRM A;  2W5S A;  4TN0 A;  5IJS A;  2IFY A;  5L0K A;  3NKR A;  3NKM A;  1E33 P;  5GOV A;  5EGE A;  3UN5 A;  1KHN A;  1KHJ A;  2W5W A;  1SHQ A;  3MK1 A;  2W8D A;  3NKN A;  4LRE A;  2GSU A;  3NVL A;  3B5Q A;  5AJ9 A;  1KH5 A;  1P49 A;  2RH6 A;  2GA3 A;  5KXA A;  1E3C P;  3M8W A;  2GSN A;  4GTY A;  4MY4 A;  1ALJ A;  3CMR A;  1ZEF A;  1ZED A;  3T02 A;  3NKP A;  4LRA A;  2VQR A; 
#chains in the Genus database with same CATH homology
 1EW8 A;  4UOO A;  4LQY A;  1ANI A;  3M8Y A;  4CXS A;  1O98 A;  4MIV A;  4QAX A;  4ZG7 A;  1N2K A;  4NWJ A;  3WAW A;  4FDJ A;  3T01 A;  3DPC A;  3TX0 A;  4CXU A;  3BDH A;  1Y6V A;  4CXK A;  3DYC A;  1KH7 A;  3TG0 A;  5DLW A;  5DLT A;  1ALH A;  4KAV A;  3SZZ A;  5L0B A;  1FSU A;  1ED9 A;  3UN3 A;  1ELZ A;  2IUC A;  3MK0 A;  3BDF A;  3BDG B;  4LRD A;  4LR7 A;  3WAY A;  3LXQ A;  4MHX A;  4UPH A;  4UPL A;  2GLQ A;  1URB A;  3BDG A;  2W5R A;  4ZGA A;  1EW9 A;  3Q3Q A;  4CYS A;  5K4P A;  4LRF A;  1ED8 A;  2G9Y A;  5EGH A;  1KH4 A;  2GSO A;  1KH9 A;  3WBH A;  3KD8 A;  5C66 A;  4GTX A;  4LRC A;  1EQJ A;  1URA A;  4LR2 A;  4UPK A;  3ED4 A;  1AUK A;  1K7H A;  4LR8 A;  4UOR A;  3UN2 A;  2W8S A;  2ANH A;  4B56 A;  1AJC A;  3IGY B;  1ALK A;  4ZG9 A;  3IDD A;  4KM4 A;  4KAY A;  1AJA A;  3NKO A;  2QZU A;  3IGZ B;  5LQQ A;  2W5X A;  1KHL A;  3A52 A;  5HRT A;  2W5V A;  4LR9 A;  3MK2 A;  4KJG A;  1N2L A;  3NKQ A;  1AJB A;  4KJD A;  3M7V A;  4GTZ A;  5DLV A;  1ANJ A;  2XRG A;  1KHK A;  4CYR A;  1ZEB A;  4GTW A;  3WAV A;  5LIA A;  1HDH A;  4ZG6 A;  3E2D A;  4LRB A;  1E2S P;  1B8J A;  2XR9 A;  1AJD A;  2X98 A;  4FDI A;  4UOP A;  4UPI A;  4N7T A;  3T00 A;  4NWX A;  4YR1 A;  1Y7A A;  1EJJ A;  1EI6 A;  2D1G A;  2W5T A;  3OT9 A;  5LRN A;  5L0E A;  2IUC B;  2W5Q A;  3SZY A;  1E1Z P;  1ELX A;  1EW2 A;  3TWZ A;  1SHN A;  3UO0 A;  5GRR A;  5IJQ A;  3UNY A;  1HJK A;  1ELY A;  2ZKT A;  3WAX A;  1ALI A;  1O99 A;  3M8Z A;  1HQA A;  5INH A;  5TJ3 A;  5LRM A;  2W5S A;  4TN0 A;  5IJS A;  2IFY A;  5L0K A;  3NKR A;  3NKM A;  1E33 P;  5GOV A;  5EGE A;  3UN5 A;  1KHN A;  1KHJ A;  2W5W A;  1SHQ A;  3MK1 A;  2W8D A;  3NKN A;  4LRE A;  2GSU A;  3NVL A;  3B5Q A;  5AJ9 A;  1KH5 A;  1P49 A;  2RH6 A;  2GA3 A;  5KXA A;  1E3C P;  3M8W A;  2GSN A;  4GTY A;  4MY4 A;  1ALJ A;  3CMR A;  1ZEF A;  1ZED A;  3T02 A;  3NKP A;  4LRA A;  2VQR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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