4KAYA

Structure of the soluble domain of lipooligosaccharide phosphoethanolamine transferase a from neisseria meningitidis - complex with zn
Total Genus 121
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
121
Knots found
sequence length
333
structure length
331
Chain Sequence
NIPYTQLDMAVVQNRPAGSLRRFVVLVVGETTRAANWGLNGYSRQTTPLLAARGDEIVNFPQVRSCGTSAHSLPCMFSTFDRTDYDEIKAEHQDNLLDIVQRAGVEVTWLENDSGCKGVCGKVPNTDVTSLNLPEYCRNGECLDNILLTKFDEVLNKNDKDAVLILHTIGSHGPTYYERYTEAERKFTPTCDTNEINKCTATLVNTYDNTVLYVDQFIDKVIRKLENRDDLESVVHYVSDHGESLGENGMYLHAAPYAIAPSGQTHIPMVMWFSKAFRQHGGIDFQCLKQKAAENEYSHDHYFSTVLGLMDISNSQTYRKEMDILAACRRP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords YhbX/YhjW/YijP/YjdB family protein
publication title The Structure of the Neisserial Lipooligosaccharide Phosphoethanolamine Transferase A (LptA) Required for Resistance to Polymyxin.
pubmed doi rcsb
source organism Neisseria meningitidis
molecule tags Transferase
total genus 121
structure length 331
sequence length 333
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.27: Phosphatidylglycerophosphatase.
pdb deposition date 2013-04-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 4kayA00
3BDFA 1KHLA 1KHNA 1EQJA 4NWJA 1AJBA 5IJQA 3T00A 3NKRA 3WAXA 4UORA 5EGEA 3IDDA 4QAXA 3T02A 4LRFA 4LR2A 1ED8A 1FSUA 1ZEDA 2W5SA 1EJJA 2ANHA 2QZUA 2IFYA 3MK2A 3TWZA 1ANIA 4UPIA 4LRCA 2GSUA 5AJ9A 3UO0A 5INHA 4MHXA 4ZG9A 3NKOA 1EW9A 3T01A 2D1GA 2GSNA 3WAWA 2W5QA 3BDGB 1KH7A 3NKMA 4LRBA 1E2SP 2W5XA 2W5RA 3WAVA 4CXUA 1EW8A 3NKNA 5C66A 5LQQA 1K7HA 1ELXA 1Y7AA 1SHNA 1ALHA 1AJAA 4LQYA 1EI6A 3UN2A 5IJSA 2W5TA 3DYCA 3NVLA 1ALJA 4UPLA 1EW2A 3NKQA 3BDGA 2X98A 4UOOA 4N7TA 2GSOA 4ZG6A 3KD8A 1ELZA 5K4PA 2VQRA 4LR7A 3TG0A 3SZZA 2RH6A 1KHKA 2GA3A 4LRAA 5LRMA 1ZEFA 3B5QA 1KH9A 4FDIA 4TN0A 4UPKA 4KJGA 4ZGAA 5TJ3A 3E2DA 3CMRA 3UNYA 2W5VA 3WAYA 5DLVA 4GTWA 4FDJA 1B8JA 1ZEBA 1P49A 5DLWA 2W5WA 5GOVA 1HQAA 5L0KA 4ZG7A 3UN3A 4KAVA 3IGYB 1ANJA 4CYSA 3M7VA 1HDHA 1E1ZP 4LR9A 4LR8A 5DLTA 3WBHA 4B56A 1KHJA 3A52A 2IUCA 1ALKA 1O99A 3SZYA 3Q3QA 2GLQA 1SHQA 5L0BA 4CXSA 4LRDA 1KH5A 1AJDA 3BDHA 4MY4A 2G9YA 4UOPA 4LREA 4KAYA 3UN5A 4CXKA 2XR9A 1AUKA 3ED4A 4KJDA 3TX0A 2IUCB 4CYRA 3M8WA 3MK0A 1ALIA 4UPHA 4NWXA 1ED9A 5HRTA 2W8SA 1N2KA 5GRRA 1O98A 2XRGA 1E3CP 1URAA 3IGZB 3DPCA 3M8ZA 5LIAA 4MIVA 4KM4A 3MK1A 5LRNA 1N2LA 3LXQA 1AJCA 1ELYA 5L0EA 3NKPA 1KH4A 5KXAA 1URBA 4GTYA 2W8DA 3OT9A 4GTXA 4GTZA 5EGHA 1HJKA 1Y6VA 2ZKTA 3M8YA 1E33P 4YR1A
chains in the Genus database with same CATH superfamily
3BDFA 1KHLA 1KHNA 1EQJA 4NWJA 1AJBA 5IJQA 3T00A 3NKRA 3WAXA 4UORA 5EGEA 3IDDA 4QAXA 3T02A 4LRFA 4LR2A 1ED8A 1FSUA 1ZEDA 2W5SA 1EJJA 2ANHA 2QZUA 2IFYA 3MK2A 3TWZA 1ANIA 4UPIA 4LRCA 2GSUA 5AJ9A 3UO0A 5INHA 4MHXA 4ZG9A 3NKOA 1EW9A 3T01A 2D1GA 2GSNA 3WAWA 2W5QA 3BDGB 1KH7A 3NKMA 4LRBA 1E2SP 2W5XA 2W5RA 3WAVA 4CXUA 1EW8A 3NKNA 5C66A 5LQQA 1K7HA 1ELXA 1Y7AA 1SHNA 1ALHA 1AJAA 4LQYA 1EI6A 3UN2A 5IJSA 2W5TA 3DYCA 3NVLA 1ALJA 4UPLA 1EW2A 3NKQA 3BDGA 2X98A 4UOOA 4N7TA 2GSOA 4ZG6A 3KD8A 1ELZA 5K4PA 2VQRA 4LR7A 3TG0A 3SZZA 2RH6A 1KHKA 2GA3A 4LRAA 5LRMA 1ZEFA 3B5QA 1KH9A 4FDIA 4TN0A 4UPKA 4KJGA 4ZGAA 5TJ3A 3E2DA 3CMRA 3UNYA 2W5VA 3WAYA 5DLVA 4GTWA 4FDJA 1B8JA 1ZEBA 1P49A 5DLWA 2W5WA 5GOVA 1HQAA 5L0KA 4ZG7A 3UN3A 4KAVA 3IGYB 1ANJA 4CYSA 3M7VA 1HDHA 1E1ZP 4LR9A 4LR8A 5DLTA 3WBHA 4B56A 1KHJA 3A52A 2IUCA 1ALKA 1O99A 3SZYA 3Q3QA 2GLQA 1SHQA 5L0BA 4CXSA 4LRDA 1KH5A 1AJDA 3BDHA 4MY4A 2G9YA 4UOPA 4LREA 4KAYA 3UN5A 4CXKA 2XR9A 1AUKA 3ED4A 4KJDA 3TX0A 2IUCB 4CYRA 3M8WA 3MK0A 1ALIA 4UPHA 4NWXA 1ED9A 5HRTA 2W8SA 1N2KA 5GRRA 1O98A 2XRGA 1E3CP 1URAA 3IGZB 3DPCA 3M8ZA 5LIAA 4MIVA 4KM4A 3MK1A 5LRNA 1N2LA 3LXQA 1AJCA 1ELYA 5L0EA 3NKPA 1KH4A 5KXAA 1URBA 4GTYA 2W8DA 3OT9A 4GTXA 4GTZA 5EGHA 1HJKA 1Y6VA 2ZKTA 3M8YA 1E33P 4YR1A
chains in the Genus database with same CATH topology
3BDFA 1KHLA 1KHNA 1EQJA 4NWJA 1AJBA 5IJQA 3T00A 3NKRA 3WAXA 4UORA 5EGEA 3IDDA 4QAXA 3T02A 4LRFA 4LR2A 1ED8A 1FSUA 1ZEDA 2W5SA 1EJJA 2ANHA 2QZUA 2IFYA 3MK2A 3TWZA 1ANIA 4UPIA 4LRCA 2GSUA 5AJ9A 3UO0A 5INHA 4MHXA 4ZG9A 3NKOA 1EW9A 3T01A 2D1GA 2GSNA 3WAWA 2W5QA 3BDGB 1KH7A 3NKMA 4LRBA 1E2SP 2W5XA 2W5RA 3WAVA 4CXUA 1EW8A 3NKNA 5C66A 5LQQA 1K7HA 1ELXA 1Y7AA 1SHNA 1ALHA 1AJAA 4LQYA 1EI6A 3UN2A 5IJSA 2W5TA 3DYCA 3NVLA 1ALJA 4UPLA 1EW2A 3NKQA 3BDGA 2X98A 4UOOA 4N7TA 2GSOA 4ZG6A 3KD8A 1ELZA 5K4PA 2VQRA 4LR7A 3TG0A 3SZZA 2RH6A 1KHKA 2GA3A 4LRAA 5LRMA 1ZEFA 3B5QA 1KH9A 4FDIA 4TN0A 4UPKA 4KJGA 4ZGAA 5TJ3A 3E2DA 3CMRA 3UNYA 2W5VA 3WAYA 5DLVA 4GTWA 4FDJA 1B8JA 1ZEBA 1P49A 5DLWA 2W5WA 5GOVA 1HQAA 5L0KA 4ZG7A 3UN3A 4KAVA 3IGYB 1ANJA 4CYSA 3M7VA 1HDHA 1E1ZP 4LR9A 4LR8A 5DLTA 3WBHA 4B56A 1KHJA 3A52A 2IUCA 1ALKA 1O99A 3SZYA 3Q3QA 2GLQA 1SHQA 5L0BA 4CXSA 4LRDA 1KH5A 1AJDA 3BDHA 4MY4A 2G9YA 4UOPA 4LREA 4KAYA 3UN5A 4CXKA 2XR9A 1AUKA 3ED4A 4KJDA 3TX0A 2IUCB 4CYRA 3M8WA 3MK0A 1ALIA 4UPHA 4NWXA 1ED9A 5HRTA 2W8SA 1N2KA 5GRRA 1O98A 2XRGA 1E3CP 1URAA 3IGZB 3DPCA 3M8ZA 5LIAA 4MIVA 4KM4A 3MK1A 5LRNA 1N2LA 3LXQA 1AJCA 1ELYA 5L0EA 3NKPA 1KH4A 5KXAA 1URBA 4GTYA 2W8DA 3OT9A 4GTXA 4GTZA 5EGHA 1HJKA 1Y6VA 2ZKTA 3M8YA 1E33P 4YR1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BDF A;  1KHL A;  1KHN A;  1EQJ A;  4NWJ A;  1AJB A;  5IJQ A;  3T00 A;  3NKR A;  3WAX A;  4UOR A;  5EGE A;  3IDD A;  4QAX A;  3T02 A;  4LRF A;  4LR2 A;  1ED8 A;  1FSU A;  1ZED A;  2W5S A;  1EJJ A;  2ANH A;  2QZU A;  2IFY A;  3MK2 A;  3TWZ A;  1ANI A;  4UPI A;  4LRC A;  2GSU A;  5AJ9 A;  3UO0 A;  5INH A;  4MHX A;  4ZG9 A;  3NKO A;  1EW9 A;  3T01 A;  2D1G A;  2GSN A;  3WAW A;  2W5Q A;  3BDG B;  1KH7 A;  3NKM A;  4LRB A;  1E2S P;  2W5X A;  2W5R A;  3WAV A;  4CXU A;  1EW8 A;  3NKN A;  5C66 A;  5LQQ A;  1K7H A;  1ELX A;  1Y7A A;  1SHN A;  1ALH A;  1AJA A;  4LQY A;  1EI6 A;  3UN2 A;  5IJS A;  2W5T A;  3DYC A;  3NVL A;  1ALJ A;  4UPL A;  1EW2 A;  3NKQ A;  3BDG A;  2X98 A;  4UOO A;  4N7T A;  2GSO A;  4ZG6 A;  3KD8 A;  1ELZ A;  5K4P A;  2VQR A;  4LR7 A;  3TG0 A;  3SZZ A;  2RH6 A;  1KHK A;  2GA3 A;  4LRA A;  5LRM A;  1ZEF A;  3B5Q A;  1KH9 A;  4FDI A;  4TN0 A;  4UPK A;  4KJG A;  4ZGA A;  5TJ3 A;  3E2D A;  3CMR A;  3UNY A;  2W5V A;  3WAY A;  5DLV A;  4GTW A;  4FDJ A;  1B8J A;  1ZEB A;  1P49 A;  5DLW A;  2W5W A;  5GOV A;  1HQA A;  5L0K A;  4ZG7 A;  3UN3 A;  4KAV A;  3IGY B;  1ANJ A;  4CYS A;  3M7V A;  1HDH A;  1E1Z P;  4LR9 A;  4LR8 A;  5DLT A;  3WBH A;  4B56 A;  1KHJ A;  3A52 A;  2IUC A;  1ALK A;  1O99 A;  3SZY A;  3Q3Q A;  2GLQ A;  1SHQ A;  5L0B A;  4CXS A;  4LRD A;  1KH5 A;  1AJD A;  3BDH A;  4MY4 A;  2G9Y A;  4UOP A;  4LRE A;  4KAY A;  3UN5 A;  4CXK A;  2XR9 A;  1AUK A;  3ED4 A;  4KJD A;  3TX0 A;  2IUC B;  4CYR A;  3M8W A;  3MK0 A;  1ALI A;  4UPH A;  4NWX A;  1ED9 A;  5HRT A;  2W8S A;  1N2K A;  5GRR A;  1O98 A;  2XRG A;  1E3C P;  1URA A;  3IGZ B;  3DPC A;  3M8Z A;  5LIA A;  4MIV A;  4KM4 A;  3MK1 A;  5LRN A;  1N2L A;  3LXQ A;  1AJC A;  1ELY A;  5L0E A;  3NKP A;  1KH4 A;  5KXA A;  1URB A;  4GTY A;  2W8D A;  3OT9 A;  4GTX A;  4GTZ A;  5EGH A;  1HJK A;  1Y6V A;  2ZKT A;  3M8Y A;  1E33 P;  4YR1 A; 
#chains in the Genus database with same CATH topology
 3BDF A;  1KHL A;  1KHN A;  1EQJ A;  4NWJ A;  1AJB A;  5IJQ A;  3T00 A;  3NKR A;  3WAX A;  4UOR A;  5EGE A;  3IDD A;  4QAX A;  3T02 A;  4LRF A;  4LR2 A;  1ED8 A;  1FSU A;  1ZED A;  2W5S A;  1EJJ A;  2ANH A;  2QZU A;  2IFY A;  3MK2 A;  3TWZ A;  1ANI A;  4UPI A;  4LRC A;  2GSU A;  5AJ9 A;  3UO0 A;  5INH A;  4MHX A;  4ZG9 A;  3NKO A;  1EW9 A;  3T01 A;  2D1G A;  2GSN A;  3WAW A;  2W5Q A;  3BDG B;  1KH7 A;  3NKM A;  4LRB A;  1E2S P;  2W5X A;  2W5R A;  3WAV A;  4CXU A;  1EW8 A;  3NKN A;  5C66 A;  5LQQ A;  1K7H A;  1ELX A;  1Y7A A;  1SHN A;  1ALH A;  1AJA A;  4LQY A;  1EI6 A;  3UN2 A;  5IJS A;  2W5T A;  3DYC A;  3NVL A;  1ALJ A;  4UPL A;  1EW2 A;  3NKQ A;  3BDG A;  2X98 A;  4UOO A;  4N7T A;  2GSO A;  4ZG6 A;  3KD8 A;  1ELZ A;  5K4P A;  2VQR A;  4LR7 A;  3TG0 A;  3SZZ A;  2RH6 A;  1KHK A;  2GA3 A;  4LRA A;  5LRM A;  1ZEF A;  3B5Q A;  1KH9 A;  4FDI A;  4TN0 A;  4UPK A;  4KJG A;  4ZGA A;  5TJ3 A;  3E2D A;  3CMR A;  3UNY A;  2W5V A;  3WAY A;  5DLV A;  4GTW A;  4FDJ A;  1B8J A;  1ZEB A;  1P49 A;  5DLW A;  2W5W A;  5GOV A;  1HQA A;  5L0K A;  4ZG7 A;  3UN3 A;  4KAV A;  3IGY B;  1ANJ A;  4CYS A;  3M7V A;  1HDH A;  1E1Z P;  4LR9 A;  4LR8 A;  5DLT A;  3WBH A;  4B56 A;  1KHJ A;  3A52 A;  2IUC A;  1ALK A;  1O99 A;  3SZY A;  3Q3Q A;  2GLQ A;  1SHQ A;  5L0B A;  4CXS A;  4LRD A;  1KH5 A;  1AJD A;  3BDH A;  4MY4 A;  2G9Y A;  4UOP A;  4LRE A;  4KAY A;  3UN5 A;  4CXK A;  2XR9 A;  1AUK A;  3ED4 A;  4KJD A;  3TX0 A;  2IUC B;  4CYR A;  3M8W A;  3MK0 A;  1ALI A;  4UPH A;  4NWX A;  1ED9 A;  5HRT A;  2W8S A;  1N2K A;  5GRR A;  1O98 A;  2XRG A;  1E3C P;  1URA A;  3IGZ B;  3DPC A;  3M8Z A;  5LIA A;  4MIV A;  4KM4 A;  3MK1 A;  5LRN A;  1N2L A;  3LXQ A;  1AJC A;  1ELY A;  5L0E A;  3NKP A;  1KH4 A;  5KXA A;  1URB A;  4GTY A;  2W8D A;  3OT9 A;  4GTX A;  4GTZ A;  5EGH A;  1HJK A;  1Y6V A;  2ZKT A;  3M8Y A;  1E33 P;  4YR1 A; 
#chains in the Genus database with same CATH homology
 3BDF A;  1KHL A;  1KHN A;  1EQJ A;  4NWJ A;  1AJB A;  5IJQ A;  3T00 A;  3NKR A;  3WAX A;  4UOR A;  5EGE A;  3IDD A;  4QAX A;  3T02 A;  4LRF A;  4LR2 A;  1ED8 A;  1FSU A;  1ZED A;  2W5S A;  1EJJ A;  2ANH A;  2QZU A;  2IFY A;  3MK2 A;  3TWZ A;  1ANI A;  4UPI A;  4LRC A;  2GSU A;  5AJ9 A;  3UO0 A;  5INH A;  4MHX A;  4ZG9 A;  3NKO A;  1EW9 A;  3T01 A;  2D1G A;  2GSN A;  3WAW A;  2W5Q A;  3BDG B;  1KH7 A;  3NKM A;  4LRB A;  1E2S P;  2W5X A;  2W5R A;  3WAV A;  4CXU A;  1EW8 A;  3NKN A;  5C66 A;  5LQQ A;  1K7H A;  1ELX A;  1Y7A A;  1SHN A;  1ALH A;  1AJA A;  4LQY A;  1EI6 A;  3UN2 A;  5IJS A;  2W5T A;  3DYC A;  3NVL A;  1ALJ A;  4UPL A;  1EW2 A;  3NKQ A;  3BDG A;  2X98 A;  4UOO A;  4N7T A;  2GSO A;  4ZG6 A;  3KD8 A;  1ELZ A;  5K4P A;  2VQR A;  4LR7 A;  3TG0 A;  3SZZ A;  2RH6 A;  1KHK A;  2GA3 A;  4LRA A;  5LRM A;  1ZEF A;  3B5Q A;  1KH9 A;  4FDI A;  4TN0 A;  4UPK A;  4KJG A;  4ZGA A;  5TJ3 A;  3E2D A;  3CMR A;  3UNY A;  2W5V A;  3WAY A;  5DLV A;  4GTW A;  4FDJ A;  1B8J A;  1ZEB A;  1P49 A;  5DLW A;  2W5W A;  5GOV A;  1HQA A;  5L0K A;  4ZG7 A;  3UN3 A;  4KAV A;  3IGY B;  1ANJ A;  4CYS A;  3M7V A;  1HDH A;  1E1Z P;  4LR9 A;  4LR8 A;  5DLT A;  3WBH A;  4B56 A;  1KHJ A;  3A52 A;  2IUC A;  1ALK A;  1O99 A;  3SZY A;  3Q3Q A;  2GLQ A;  1SHQ A;  5L0B A;  4CXS A;  4LRD A;  1KH5 A;  1AJD A;  3BDH A;  4MY4 A;  2G9Y A;  4UOP A;  4LRE A;  4KAY A;  3UN5 A;  4CXK A;  2XR9 A;  1AUK A;  3ED4 A;  4KJD A;  3TX0 A;  2IUC B;  4CYR A;  3M8W A;  3MK0 A;  1ALI A;  4UPH A;  4NWX A;  1ED9 A;  5HRT A;  2W8S A;  1N2K A;  5GRR A;  1O98 A;  2XRG A;  1E3C P;  1URA A;  3IGZ B;  3DPC A;  3M8Z A;  5LIA A;  4MIV A;  4KM4 A;  3MK1 A;  5LRN A;  1N2L A;  3LXQ A;  1AJC A;  1ELY A;  5L0E A;  3NKP A;  1KH4 A;  5KXA A;  1URB A;  4GTY A;  2W8D A;  3OT9 A;  4GTX A;  4GTZ A;  5EGH A;  1HJK A;  1Y6V A;  2ZKT A;  3M8Y A;  1E33 P;  4YR1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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