3B5QA

Crystal structure of a putative sulfatase (np_810509.1) from bacteroides thetaiotaomicron vpi-5482 at 2.40 a resolution
Total Genus 165
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
165
Knots found
sequence length
464
structure length
464
Chain Sequence
EKPNFLIIQCDHLTQRVVGAYGQTQGCTLPIDEVASRGVIFSNAYVGCPLSQPSRAALWSGMMPHQTNVRSNSSEPVNTRLPENVPTLGSLFSESGYEAVHFGKTHDMGSLRGFKHKEPVAKPFTDPEFPVNNDSFLDVGTCEDAVAYLSNPPKEPFICIADFQNPHNICGFIGENAGVHTDRPISGPLPELPDNFDVEDWSNIPTPVQYICCSHRRMTQAAHWNEENYRHYIAAFQHYTKMVSKQVDSVLKALYSTPAGRNTIVVIMADHGDGMASHRMVTKHISFYDEMTNVPFIFAGPGIKQQKKPVDHLLTQPTLDLLPTLCDLAGIAVPAEKAGISLAPTLRGEKQKKSHPYVVSEWHSEYEYVTTPGRMVRGPRYKYTHYLEGNGEELYDMKKDPGERKNLAKDPKYSKILAEHRALLDDYITRSKDDYRSLKVDADPRCRNHTPGYPSHEGPGAREI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Putative sulfatase yidJ
publication title Crystal structure of a putative sulfatase (NP_810509.1) from Bacteroides thetaiotaomicron VPI-5482 at 2.40 A resolution
rcsb
source organism Bacteroides thetaiotaomicron vpi-5482
molecule tags Hydrolase
total genus 165
structure length 464
sequence length 464
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature
pdb deposition date 2007-10-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
A PF16347 DUF4976 Domain of unknown function (DUF4976)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3b5qA00
1ANJA 1E2SP 1ZEBA 1ANIA 3M7VA 3BDHA 5LRNA 4LREA 5INHA 5TJ3A 4CXUA 4LRCA 5EGHA 3TG0A 1E3CP 4LRBA 4KJGA 1Y7AA 3Q3QA 3WBHA 3MK1A 4UOPA 5DLWA 4ZG7A 1KHNA 1O98A 3UN5A 1E33P 2W8SA 1ED9A 3M8ZA 5IJSA 1KH4A 3IGZB 5GRRA 4QAXA 1URBA 5L0EA 1AJDA 2W5VA 4MY4A 4UPKA 1ALJA 3NKNA 1ALHA 1EJJA 5L0KA 1EW8A 5LQQA 3BDGB 4CYSA 4UPLA 3T00A 2RH6A 4CXSA 3A52A 2D1GA 2W5SA 4UPHA 1HQAA 2W5QA 3CMRA 5DLVA 1P49A 1URAA 4UOOA 1HDHA 4GTWA 3OT9A 1N2LA 3NKOA 1KHLA 3UNYA 4LR7A 4FDIA 1ELXA 1B8JA 1O99A 4LRFA 4CYRA 1EW2A 2GSOA 2IUCB 3NKMA 4KAVA 4UORA 3M8YA 1HJKA 1ALIA 3BDGA 1KHKA 2W5TA 3WAYA 1KH9A 4B56A 3DYCA 4TN0A 3M8WA 1ALKA 4KJDA 4LRDA 3UN3A 5HRTA 4N7TA 1EI6A 1ELYA 1AUKA 4LR2A 5DLTA 2XRGA 3DPCA 2VQRA 3NKRA 1ZEDA 4MHXA 3TX0A 2GA3A 4GTXA 2W5XA 1KH7A 3MK2A 3IDDA 2ZKTA 3MK0A 1ED8A 1EQJA 1EW9A 3BDFA 1ELZA 4GTZA 1AJBA 3UO0A 1SHQA 4UPIA 4LR9A 1N2KA 5KXAA 5L0BA 1KH5A 1ZEFA 3T02A 3UN2A 3WAXA 4ZG6A 5LRMA 4FDJA 5AJ9A 3NKQA 5GOVA 2XR9A 1SHNA 2GLQA 4LR8A 4LRAA 4YR1A 3LXQA 3TWZA 3SZZA 4ZG9A 2ANHA 4CXKA 4KAYA 2G9YA 1K7HA 3NKPA 3NVLA 4NWJA 4LQYA 3WAWA 2W5WA 2W8DA 2W5RA 4GTYA 1KHJA 2GSUA 2IUCA 1E1ZP 3T01A 3KD8A 3E2DA 3IGYB 3ED4A 3SZYA 3B5QA 2QZUA 4MIVA 5C66A 5LIAA 4NWXA 2X98A 1AJAA 5EGEA 5K4PA 1AJCA 5IJQA 3WAVA 4KM4A 4ZGAA 1Y6VA 2GSNA 1FSUA 2IFYA
chains in the Genus database with same CATH superfamily
1ANJA 1E2SP 1ZEBA 1ANIA 3M7VA 3BDHA 5LRNA 4LREA 5INHA 5TJ3A 4CXUA 4LRCA 5EGHA 3TG0A 1E3CP 4LRBA 4KJGA 1Y7AA 3Q3QA 3WBHA 3MK1A 4UOPA 5DLWA 4ZG7A 1KHNA 1O98A 3UN5A 1E33P 2W8SA 1ED9A 3M8ZA 5IJSA 1KH4A 3IGZB 5GRRA 4QAXA 1URBA 5L0EA 1AJDA 2W5VA 4MY4A 4UPKA 1ALJA 3NKNA 1ALHA 1EJJA 5L0KA 1EW8A 5LQQA 3BDGB 4CYSA 4UPLA 3T00A 2RH6A 4CXSA 3A52A 2D1GA 2W5SA 4UPHA 1HQAA 2W5QA 3CMRA 5DLVA 1P49A 1URAA 4UOOA 1HDHA 4GTWA 3OT9A 1N2LA 3NKOA 1KHLA 3UNYA 4LR7A 4FDIA 1ELXA 1B8JA 1O99A 4LRFA 4CYRA 1EW2A 2GSOA 2IUCB 3NKMA 4KAVA 4UORA 3M8YA 1HJKA 1ALIA 3BDGA 1KHKA 2W5TA 3WAYA 1KH9A 4B56A 3DYCA 4TN0A 3M8WA 1ALKA 4KJDA 4LRDA 3UN3A 5HRTA 4N7TA 1EI6A 1ELYA 1AUKA 4LR2A 5DLTA 2XRGA 3DPCA 2VQRA 3NKRA 1ZEDA 4MHXA 3TX0A 2GA3A 4GTXA 2W5XA 1KH7A 3MK2A 3IDDA 2ZKTA 3MK0A 1ED8A 1EQJA 1EW9A 3BDFA 1ELZA 4GTZA 1AJBA 3UO0A 1SHQA 4UPIA 4LR9A 1N2KA 5KXAA 5L0BA 1KH5A 1ZEFA 3T02A 3UN2A 3WAXA 4ZG6A 5LRMA 4FDJA 5AJ9A 3NKQA 5GOVA 2XR9A 1SHNA 2GLQA 4LR8A 4LRAA 4YR1A 3LXQA 3TWZA 3SZZA 4ZG9A 2ANHA 4CXKA 4KAYA 2G9YA 1K7HA 3NKPA 3NVLA 4NWJA 4LQYA 3WAWA 2W5WA 2W8DA 2W5RA 4GTYA 1KHJA 2GSUA 2IUCA 1E1ZP 3T01A 3KD8A 3E2DA 3IGYB 3ED4A 3SZYA 3B5QA 2QZUA 4MIVA 5C66A 5LIAA 4NWXA 2X98A 1AJAA 5EGEA 5K4PA 1AJCA 5IJQA 3WAVA 4KM4A 4ZGAA 1Y6VA 2GSNA 1FSUA 2IFYA
chains in the Genus database with same CATH topology
1ANJA 1E2SP 1ZEBA 1ANIA 3M7VA 3BDHA 5LRNA 4LREA 5INHA 5TJ3A 4CXUA 4LRCA 5EGHA 3TG0A 1E3CP 4LRBA 4KJGA 1Y7AA 3Q3QA 3WBHA 3MK1A 4UOPA 5DLWA 4ZG7A 1KHNA 1O98A 3UN5A 1E33P 2W8SA 1ED9A 3M8ZA 5IJSA 1KH4A 3IGZB 5GRRA 4QAXA 1URBA 5L0EA 1AJDA 2W5VA 4MY4A 4UPKA 1ALJA 3NKNA 1ALHA 1EJJA 5L0KA 1EW8A 5LQQA 3BDGB 4CYSA 4UPLA 3T00A 2RH6A 4CXSA 3A52A 2D1GA 2W5SA 4UPHA 1HQAA 2W5QA 3CMRA 5DLVA 1P49A 1URAA 4UOOA 1HDHA 4GTWA 3OT9A 1N2LA 3NKOA 1KHLA 3UNYA 4LR7A 4FDIA 1ELXA 1B8JA 1O99A 4LRFA 4CYRA 1EW2A 2GSOA 2IUCB 3NKMA 4KAVA 4UORA 3M8YA 1HJKA 1ALIA 3BDGA 1KHKA 2W5TA 3WAYA 1KH9A 4B56A 3DYCA 4TN0A 3M8WA 1ALKA 4KJDA 4LRDA 3UN3A 5HRTA 4N7TA 1EI6A 1ELYA 1AUKA 4LR2A 5DLTA 2XRGA 3DPCA 2VQRA 3NKRA 1ZEDA 4MHXA 3TX0A 2GA3A 4GTXA 2W5XA 1KH7A 3MK2A 3IDDA 2ZKTA 3MK0A 1ED8A 1EQJA 1EW9A 3BDFA 1ELZA 4GTZA 1AJBA 3UO0A 1SHQA 4UPIA 4LR9A 1N2KA 5KXAA 5L0BA 1KH5A 1ZEFA 3T02A 3UN2A 3WAXA 4ZG6A 5LRMA 4FDJA 5AJ9A 3NKQA 5GOVA 2XR9A 1SHNA 2GLQA 4LR8A 4LRAA 4YR1A 3LXQA 3TWZA 3SZZA 4ZG9A 2ANHA 4CXKA 4KAYA 2G9YA 1K7HA 3NKPA 3NVLA 4NWJA 4LQYA 3WAWA 2W5WA 2W8DA 2W5RA 4GTYA 1KHJA 2GSUA 2IUCA 1E1ZP 3T01A 3KD8A 3E2DA 3IGYB 3ED4A 3SZYA 3B5QA 2QZUA 4MIVA 5C66A 5LIAA 4NWXA 2X98A 1AJAA 5EGEA 5K4PA 1AJCA 5IJQA 3WAVA 4KM4A 4ZGAA 1Y6VA 2GSNA 1FSUA 2IFYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ANJ A;  1E2S P;  1ZEB A;  1ANI A;  3M7V A;  3BDH A;  5LRN A;  4LRE A;  5INH A;  5TJ3 A;  4CXU A;  4LRC A;  5EGH A;  3TG0 A;  1E3C P;  4LRB A;  4KJG A;  1Y7A A;  3Q3Q A;  3WBH A;  3MK1 A;  4UOP A;  5DLW A;  4ZG7 A;  1KHN A;  1O98 A;  3UN5 A;  1E33 P;  2W8S A;  1ED9 A;  3M8Z A;  5IJS A;  1KH4 A;  3IGZ B;  5GRR A;  4QAX A;  1URB A;  5L0E A;  1AJD A;  2W5V A;  4MY4 A;  4UPK A;  1ALJ A;  3NKN A;  1ALH A;  1EJJ A;  5L0K A;  1EW8 A;  5LQQ A;  3BDG B;  4CYS A;  4UPL A;  3T00 A;  2RH6 A;  4CXS A;  3A52 A;  2D1G A;  2W5S A;  4UPH A;  1HQA A;  2W5Q A;  3CMR A;  5DLV A;  1P49 A;  1URA A;  4UOO A;  1HDH A;  4GTW A;  3OT9 A;  1N2L A;  3NKO A;  1KHL A;  3UNY A;  4LR7 A;  4FDI A;  1ELX A;  1B8J A;  1O99 A;  4LRF A;  4CYR A;  1EW2 A;  2GSO A;  2IUC B;  3NKM A;  4KAV A;  4UOR A;  3M8Y A;  1HJK A;  1ALI A;  3BDG A;  1KHK A;  2W5T A;  3WAY A;  1KH9 A;  4B56 A;  3DYC A;  4TN0 A;  3M8W A;  1ALK A;  4KJD A;  4LRD A;  3UN3 A;  5HRT A;  4N7T A;  1EI6 A;  1ELY A;  1AUK A;  4LR2 A;  5DLT A;  2XRG A;  3DPC A;  2VQR A;  3NKR A;  1ZED A;  4MHX A;  3TX0 A;  2GA3 A;  4GTX A;  2W5X A;  1KH7 A;  3MK2 A;  3IDD A;  2ZKT A;  3MK0 A;  1ED8 A;  1EQJ A;  1EW9 A;  3BDF A;  1ELZ A;  4GTZ A;  1AJB A;  3UO0 A;  1SHQ A;  4UPI A;  4LR9 A;  1N2K A;  5KXA A;  5L0B A;  1KH5 A;  1ZEF A;  3T02 A;  3UN2 A;  3WAX A;  4ZG6 A;  5LRM A;  4FDJ A;  5AJ9 A;  3NKQ A;  5GOV A;  2XR9 A;  1SHN A;  2GLQ A;  4LR8 A;  4LRA A;  4YR1 A;  3LXQ A;  3TWZ A;  3SZZ A;  4ZG9 A;  2ANH A;  4CXK A;  4KAY A;  2G9Y A;  1K7H A;  3NKP A;  3NVL A;  4NWJ A;  4LQY A;  3WAW A;  2W5W A;  2W8D A;  2W5R A;  4GTY A;  1KHJ A;  2GSU A;  2IUC A;  1E1Z P;  3T01 A;  3KD8 A;  3E2D A;  3IGY B;  3ED4 A;  3SZY A;  3B5Q A;  2QZU A;  4MIV A;  5C66 A;  5LIA A;  4NWX A;  2X98 A;  1AJA A;  5EGE A;  5K4P A;  1AJC A;  5IJQ A;  3WAV A;  4KM4 A;  4ZGA A;  1Y6V A;  2GSN A;  1FSU A;  2IFY A; 
#chains in the Genus database with same CATH topology
 1ANJ A;  1E2S P;  1ZEB A;  1ANI A;  3M7V A;  3BDH A;  5LRN A;  4LRE A;  5INH A;  5TJ3 A;  4CXU A;  4LRC A;  5EGH A;  3TG0 A;  1E3C P;  4LRB A;  4KJG A;  1Y7A A;  3Q3Q A;  3WBH A;  3MK1 A;  4UOP A;  5DLW A;  4ZG7 A;  1KHN A;  1O98 A;  3UN5 A;  1E33 P;  2W8S A;  1ED9 A;  3M8Z A;  5IJS A;  1KH4 A;  3IGZ B;  5GRR A;  4QAX A;  1URB A;  5L0E A;  1AJD A;  2W5V A;  4MY4 A;  4UPK A;  1ALJ A;  3NKN A;  1ALH A;  1EJJ A;  5L0K A;  1EW8 A;  5LQQ A;  3BDG B;  4CYS A;  4UPL A;  3T00 A;  2RH6 A;  4CXS A;  3A52 A;  2D1G A;  2W5S A;  4UPH A;  1HQA A;  2W5Q A;  3CMR A;  5DLV A;  1P49 A;  1URA A;  4UOO A;  1HDH A;  4GTW A;  3OT9 A;  1N2L A;  3NKO A;  1KHL A;  3UNY A;  4LR7 A;  4FDI A;  1ELX A;  1B8J A;  1O99 A;  4LRF A;  4CYR A;  1EW2 A;  2GSO A;  2IUC B;  3NKM A;  4KAV A;  4UOR A;  3M8Y A;  1HJK A;  1ALI A;  3BDG A;  1KHK A;  2W5T A;  3WAY A;  1KH9 A;  4B56 A;  3DYC A;  4TN0 A;  3M8W A;  1ALK A;  4KJD A;  4LRD A;  3UN3 A;  5HRT A;  4N7T A;  1EI6 A;  1ELY A;  1AUK A;  4LR2 A;  5DLT A;  2XRG A;  3DPC A;  2VQR A;  3NKR A;  1ZED A;  4MHX A;  3TX0 A;  2GA3 A;  4GTX A;  2W5X A;  1KH7 A;  3MK2 A;  3IDD A;  2ZKT A;  3MK0 A;  1ED8 A;  1EQJ A;  1EW9 A;  3BDF A;  1ELZ A;  4GTZ A;  1AJB A;  3UO0 A;  1SHQ A;  4UPI A;  4LR9 A;  1N2K A;  5KXA A;  5L0B A;  1KH5 A;  1ZEF A;  3T02 A;  3UN2 A;  3WAX A;  4ZG6 A;  5LRM A;  4FDJ A;  5AJ9 A;  3NKQ A;  5GOV A;  2XR9 A;  1SHN A;  2GLQ A;  4LR8 A;  4LRA A;  4YR1 A;  3LXQ A;  3TWZ A;  3SZZ A;  4ZG9 A;  2ANH A;  4CXK A;  4KAY A;  2G9Y A;  1K7H A;  3NKP A;  3NVL A;  4NWJ A;  4LQY A;  3WAW A;  2W5W A;  2W8D A;  2W5R A;  4GTY A;  1KHJ A;  2GSU A;  2IUC A;  1E1Z P;  3T01 A;  3KD8 A;  3E2D A;  3IGY B;  3ED4 A;  3SZY A;  3B5Q A;  2QZU A;  4MIV A;  5C66 A;  5LIA A;  4NWX A;  2X98 A;  1AJA A;  5EGE A;  5K4P A;  1AJC A;  5IJQ A;  3WAV A;  4KM4 A;  4ZGA A;  1Y6V A;  2GSN A;  1FSU A;  2IFY A; 
#chains in the Genus database with same CATH homology
 1ANJ A;  1E2S P;  1ZEB A;  1ANI A;  3M7V A;  3BDH A;  5LRN A;  4LRE A;  5INH A;  5TJ3 A;  4CXU A;  4LRC A;  5EGH A;  3TG0 A;  1E3C P;  4LRB A;  4KJG A;  1Y7A A;  3Q3Q A;  3WBH A;  3MK1 A;  4UOP A;  5DLW A;  4ZG7 A;  1KHN A;  1O98 A;  3UN5 A;  1E33 P;  2W8S A;  1ED9 A;  3M8Z A;  5IJS A;  1KH4 A;  3IGZ B;  5GRR A;  4QAX A;  1URB A;  5L0E A;  1AJD A;  2W5V A;  4MY4 A;  4UPK A;  1ALJ A;  3NKN A;  1ALH A;  1EJJ A;  5L0K A;  1EW8 A;  5LQQ A;  3BDG B;  4CYS A;  4UPL A;  3T00 A;  2RH6 A;  4CXS A;  3A52 A;  2D1G A;  2W5S A;  4UPH A;  1HQA A;  2W5Q A;  3CMR A;  5DLV A;  1P49 A;  1URA A;  4UOO A;  1HDH A;  4GTW A;  3OT9 A;  1N2L A;  3NKO A;  1KHL A;  3UNY A;  4LR7 A;  4FDI A;  1ELX A;  1B8J A;  1O99 A;  4LRF A;  4CYR A;  1EW2 A;  2GSO A;  2IUC B;  3NKM A;  4KAV A;  4UOR A;  3M8Y A;  1HJK A;  1ALI A;  3BDG A;  1KHK A;  2W5T A;  3WAY A;  1KH9 A;  4B56 A;  3DYC A;  4TN0 A;  3M8W A;  1ALK A;  4KJD A;  4LRD A;  3UN3 A;  5HRT A;  4N7T A;  1EI6 A;  1ELY A;  1AUK A;  4LR2 A;  5DLT A;  2XRG A;  3DPC A;  2VQR A;  3NKR A;  1ZED A;  4MHX A;  3TX0 A;  2GA3 A;  4GTX A;  2W5X A;  1KH7 A;  3MK2 A;  3IDD A;  2ZKT A;  3MK0 A;  1ED8 A;  1EQJ A;  1EW9 A;  3BDF A;  1ELZ A;  4GTZ A;  1AJB A;  3UO0 A;  1SHQ A;  4UPI A;  4LR9 A;  1N2K A;  5KXA A;  5L0B A;  1KH5 A;  1ZEF A;  3T02 A;  3UN2 A;  3WAX A;  4ZG6 A;  5LRM A;  4FDJ A;  5AJ9 A;  3NKQ A;  5GOV A;  2XR9 A;  1SHN A;  2GLQ A;  4LR8 A;  4LRA A;  4YR1 A;  3LXQ A;  3TWZ A;  3SZZ A;  4ZG9 A;  2ANH A;  4CXK A;  4KAY A;  2G9Y A;  1K7H A;  3NKP A;  3NVL A;  4NWJ A;  4LQY A;  3WAW A;  2W5W A;  2W8D A;  2W5R A;  4GTY A;  1KHJ A;  2GSU A;  2IUC A;  1E1Z P;  3T01 A;  3KD8 A;  3E2D A;  3IGY B;  3ED4 A;  3SZY A;  3B5Q A;  2QZU A;  4MIV A;  5C66 A;  5LIA A;  4NWX A;  2X98 A;  1AJA A;  5EGE A;  5K4P A;  1AJC A;  5IJQ A;  3WAV A;  4KM4 A;  4ZGA A;  1Y6V A;  2GSN A;  1FSU A;  2IFY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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