1ED9A

Structure of e. coli alkaline phosphatase without the inorganic phosphate at 1.75a resolution
Total Genus 167
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
167
Knots found
sequence length
449
structure length
449
Chain Sequence
TPEMPVLENRAAQGDITAPGGARRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREQAQARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQDHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title A revised mechanism for the alkaline phosphatase reaction involving three metal ions.
pubmed doi rcsb
molecule keywords ALKALINE PHOSPHATASE
molecule tags Hydrolase
source organism Escherichia coli
total genus 167
structure length 449
sequence length 449
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2000-01-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1ed9A00
4LR9A 3E2DA 3OT9A 4MHXA 5AJ9A 1N2KA 1ALIA 2IFYA 4KAYA 4CXSA 2W8SA 4MIVA 3M8ZA 1KHJA 1O99A 4GTYA 2W5XA 1AUKA 3TX0A 1URBA 1SHNA 3TG0A 1E2SP 4ZGAA 3NKMA 3DPCA 4LRFA 1EQJA 4LQYA 5IJQA 3MK2A 3SZZA 2W5TA 2W5VA 3NKRA 1AJAA 4YR1A 1B8JA 1EJJA 1HQAA 2W5SA 4UOOA 4UPIA 5DLVA 3BDGA 4LR7A 3T00A 1N2LA 1KHKA 1KH4A 1KHLA 5EGHA 5HRTA 4GTWA 4KM4A 1EI6A 3NKPA 5DLTA 4TN0A 4GTXA 3BDHA 1ELYA 3CMRA 1EW9A 1ALHA 1Y6VA 1ZEFA 4CXKA 5LIAA 1AJCA 4LRBA 3SZYA 3BDGB 2QZUA 3T01A 3MK0A 4UORA 5LQQA 1ELZA 5KXAA 3MK1A 4KAVA 1O98A 5GRRA 4QAXA 3M8WA 3UN5A 4ZG9A 2D1GA 3NVLA 4MY4A 3IDDA 3NKOA 5L0EA 2ZKTA 4N7TA 1EW8A 2VQRA 5IJSA 4LRCA 4UOPA 5LRNA 4NWXA 2X98A 2GSOA 4LREA 3UO0A 2IUCA 3B5QA 1KH9A 4KJGA 1E3CP 2W5QA 5GOVA 5TJ3A 1AJDA 1ED8A 3A52A 1URAA 1Y7AA 3UN3A 1ALKA 5C66A 2GSUA 3T02A 3WBHA 2GLQA 3IGZB 4GTZA 4CYRA 3ED4A 4B56A 2IUCB 3BDFA 5L0BA 2XR9A 1KH7A 1EW2A 5INHA 3UN2A 4KJDA 5K4PA 3WAYA 3NKNA 1FSUA 4UPKA 5LRMA 1ED9A 5L0KA 3WAVA 1HJKA 1KH5A 4ZG7A 3IGYB 1ZEDA 3TWZA 1E1ZP 2RH6A 1ANIA 3KD8A 4LRAA 4NWJA 3LXQA 1P49A 2G9YA 2GSNA 2XRGA 3NKQA 1ELXA 4FDIA 1ZEBA 3Q3QA 4CYSA 2ANHA 4UPLA 4ZG6A 2W5WA 4LR8A 3M7VA 1ANJA 1ALJA 3UNYA 1K7HA 4UPHA 3WAXA 1SHQA 4LR2A 5DLWA 3M8YA 1E33P 4CXUA 1HDHA 1KHNA 2GA3A 3DYCA 1AJBA 2W5RA 4LRDA 4FDJA 3WAWA 2W8DA 5EGEA
chains in the Genus database with same CATH superfamily
4LR9A 3E2DA 3OT9A 4MHXA 5AJ9A 1N2KA 1ALIA 2IFYA 4KAYA 4CXSA 2W8SA 4MIVA 3M8ZA 1KHJA 1O99A 4GTYA 2W5XA 1AUKA 3TX0A 1URBA 1SHNA 3TG0A 1E2SP 4ZGAA 3NKMA 3DPCA 4LRFA 1EQJA 4LQYA 5IJQA 3MK2A 3SZZA 2W5TA 2W5VA 3NKRA 1AJAA 4YR1A 1B8JA 1EJJA 1HQAA 2W5SA 4UOOA 4UPIA 5DLVA 3BDGA 4LR7A 3T00A 1N2LA 1KHKA 1KH4A 1KHLA 5EGHA 5HRTA 4GTWA 4KM4A 1EI6A 3NKPA 5DLTA 4TN0A 4GTXA 3BDHA 1ELYA 3CMRA 1EW9A 1ALHA 1Y6VA 1ZEFA 4CXKA 5LIAA 1AJCA 4LRBA 3SZYA 3BDGB 2QZUA 3T01A 3MK0A 4UORA 5LQQA 1ELZA 5KXAA 3MK1A 4KAVA 1O98A 5GRRA 4QAXA 3M8WA 3UN5A 4ZG9A 2D1GA 3NVLA 4MY4A 3IDDA 3NKOA 5L0EA 2ZKTA 4N7TA 1EW8A 2VQRA 5IJSA 4LRCA 4UOPA 5LRNA 4NWXA 2X98A 2GSOA 4LREA 3UO0A 2IUCA 3B5QA 1KH9A 4KJGA 1E3CP 2W5QA 5GOVA 5TJ3A 1AJDA 1ED8A 3A52A 1URAA 1Y7AA 3UN3A 1ALKA 5C66A 2GSUA 3T02A 3WBHA 2GLQA 3IGZB 4GTZA 4CYRA 3ED4A 4B56A 2IUCB 3BDFA 5L0BA 2XR9A 1KH7A 1EW2A 5INHA 3UN2A 4KJDA 5K4PA 3WAYA 3NKNA 1FSUA 4UPKA 5LRMA 1ED9A 5L0KA 3WAVA 1HJKA 1KH5A 4ZG7A 3IGYB 1ZEDA 3TWZA 1E1ZP 2RH6A 1ANIA 3KD8A 4LRAA 4NWJA 3LXQA 1P49A 2G9YA 2GSNA 2XRGA 3NKQA 1ELXA 4FDIA 1ZEBA 3Q3QA 4CYSA 2ANHA 4UPLA 4ZG6A 2W5WA 4LR8A 3M7VA 1ANJA 1ALJA 3UNYA 1K7HA 4UPHA 3WAXA 1SHQA 4LR2A 5DLWA 3M8YA 1E33P 4CXUA 1HDHA 1KHNA 2GA3A 3DYCA 1AJBA 2W5RA 4LRDA 4FDJA 3WAWA 2W8DA 5EGEA
chains in the Genus database with same CATH topology
4LR9A 3E2DA 3OT9A 4MHXA 5AJ9A 1N2KA 1ALIA 2IFYA 4KAYA 4CXSA 2W8SA 4MIVA 3M8ZA 1KHJA 1O99A 4GTYA 2W5XA 1AUKA 3TX0A 1URBA 1SHNA 3TG0A 1E2SP 4ZGAA 3NKMA 3DPCA 4LRFA 1EQJA 4LQYA 5IJQA 3MK2A 3SZZA 2W5TA 2W5VA 3NKRA 1AJAA 4YR1A 1B8JA 1EJJA 1HQAA 2W5SA 4UOOA 4UPIA 5DLVA 3BDGA 4LR7A 3T00A 1N2LA 1KHKA 1KH4A 1KHLA 5EGHA 5HRTA 4GTWA 4KM4A 1EI6A 3NKPA 5DLTA 4TN0A 4GTXA 3BDHA 1ELYA 3CMRA 1EW9A 1ALHA 1Y6VA 1ZEFA 4CXKA 5LIAA 1AJCA 4LRBA 3SZYA 3BDGB 2QZUA 3T01A 3MK0A 4UORA 5LQQA 1ELZA 5KXAA 3MK1A 4KAVA 1O98A 5GRRA 4QAXA 3M8WA 3UN5A 4ZG9A 2D1GA 3NVLA 4MY4A 3IDDA 3NKOA 5L0EA 2ZKTA 4N7TA 1EW8A 2VQRA 5IJSA 4LRCA 4UOPA 5LRNA 4NWXA 2X98A 2GSOA 4LREA 3UO0A 2IUCA 3B5QA 1KH9A 4KJGA 1E3CP 2W5QA 5GOVA 5TJ3A 1AJDA 1ED8A 3A52A 1URAA 1Y7AA 3UN3A 1ALKA 5C66A 2GSUA 3T02A 3WBHA 2GLQA 3IGZB 4GTZA 4CYRA 3ED4A 4B56A 2IUCB 3BDFA 5L0BA 2XR9A 1KH7A 1EW2A 5INHA 3UN2A 4KJDA 5K4PA 3WAYA 3NKNA 1FSUA 4UPKA 5LRMA 1ED9A 5L0KA 3WAVA 1HJKA 1KH5A 4ZG7A 3IGYB 1ZEDA 3TWZA 1E1ZP 2RH6A 1ANIA 3KD8A 4LRAA 4NWJA 3LXQA 1P49A 2G9YA 2GSNA 2XRGA 3NKQA 1ELXA 4FDIA 1ZEBA 3Q3QA 4CYSA 2ANHA 4UPLA 4ZG6A 2W5WA 4LR8A 3M7VA 1ANJA 1ALJA 3UNYA 1K7HA 4UPHA 3WAXA 1SHQA 4LR2A 5DLWA 3M8YA 1E33P 4CXUA 1HDHA 1KHNA 2GA3A 3DYCA 1AJBA 2W5RA 4LRDA 4FDJA 3WAWA 2W8DA 5EGEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4LR9 A;  3E2D A;  3OT9 A;  4MHX A;  5AJ9 A;  1N2K A;  1ALI A;  2IFY A;  4KAY A;  4CXS A;  2W8S A;  4MIV A;  3M8Z A;  1KHJ A;  1O99 A;  4GTY A;  2W5X A;  1AUK A;  3TX0 A;  1URB A;  1SHN A;  3TG0 A;  1E2S P;  4ZGA A;  3NKM A;  3DPC A;  4LRF A;  1EQJ A;  4LQY A;  5IJQ A;  3MK2 A;  3SZZ A;  2W5T A;  2W5V A;  3NKR A;  1AJA A;  4YR1 A;  1B8J A;  1EJJ A;  1HQA A;  2W5S A;  4UOO A;  4UPI A;  5DLV A;  3BDG A;  4LR7 A;  3T00 A;  1N2L A;  1KHK A;  1KH4 A;  1KHL A;  5EGH A;  5HRT A;  4GTW A;  4KM4 A;  1EI6 A;  3NKP A;  5DLT A;  4TN0 A;  4GTX A;  3BDH A;  1ELY A;  3CMR A;  1EW9 A;  1ALH A;  1Y6V A;  1ZEF A;  4CXK A;  5LIA A;  1AJC A;  4LRB A;  3SZY A;  3BDG B;  2QZU A;  3T01 A;  3MK0 A;  4UOR A;  5LQQ A;  1ELZ A;  5KXA A;  3MK1 A;  4KAV A;  1O98 A;  5GRR A;  4QAX A;  3M8W A;  3UN5 A;  4ZG9 A;  2D1G A;  3NVL A;  4MY4 A;  3IDD A;  3NKO A;  5L0E A;  2ZKT A;  4N7T A;  1EW8 A;  2VQR A;  5IJS A;  4LRC A;  4UOP A;  5LRN A;  4NWX A;  2X98 A;  2GSO A;  4LRE A;  3UO0 A;  2IUC A;  3B5Q A;  1KH9 A;  4KJG A;  1E3C P;  2W5Q A;  5GOV A;  5TJ3 A;  1AJD A;  1ED8 A;  3A52 A;  1URA A;  1Y7A A;  3UN3 A;  1ALK A;  5C66 A;  2GSU A;  3T02 A;  3WBH A;  2GLQ A;  3IGZ B;  4GTZ A;  4CYR A;  3ED4 A;  4B56 A;  2IUC B;  3BDF A;  5L0B A;  2XR9 A;  1KH7 A;  1EW2 A;  5INH A;  3UN2 A;  4KJD A;  5K4P A;  3WAY A;  3NKN A;  1FSU A;  4UPK A;  5LRM A;  1ED9 A;  5L0K A;  3WAV A;  1HJK A;  1KH5 A;  4ZG7 A;  3IGY B;  1ZED A;  3TWZ A;  1E1Z P;  2RH6 A;  1ANI A;  3KD8 A;  4LRA A;  4NWJ A;  3LXQ A;  1P49 A;  2G9Y A;  2GSN A;  2XRG A;  3NKQ A;  1ELX A;  4FDI A;  1ZEB A;  3Q3Q A;  4CYS A;  2ANH A;  4UPL A;  4ZG6 A;  2W5W A;  4LR8 A;  3M7V A;  1ANJ A;  1ALJ A;  3UNY A;  1K7H A;  4UPH A;  3WAX A;  1SHQ A;  4LR2 A;  5DLW A;  3M8Y A;  1E33 P;  4CXU A;  1HDH A;  1KHN A;  2GA3 A;  3DYC A;  1AJB A;  2W5R A;  4LRD A;  4FDJ A;  3WAW A;  2W8D A;  5EGE A; 
#chains in the Genus database with same CATH topology
 4LR9 A;  3E2D A;  3OT9 A;  4MHX A;  5AJ9 A;  1N2K A;  1ALI A;  2IFY A;  4KAY A;  4CXS A;  2W8S A;  4MIV A;  3M8Z A;  1KHJ A;  1O99 A;  4GTY A;  2W5X A;  1AUK A;  3TX0 A;  1URB A;  1SHN A;  3TG0 A;  1E2S P;  4ZGA A;  3NKM A;  3DPC A;  4LRF A;  1EQJ A;  4LQY A;  5IJQ A;  3MK2 A;  3SZZ A;  2W5T A;  2W5V A;  3NKR A;  1AJA A;  4YR1 A;  1B8J A;  1EJJ A;  1HQA A;  2W5S A;  4UOO A;  4UPI A;  5DLV A;  3BDG A;  4LR7 A;  3T00 A;  1N2L A;  1KHK A;  1KH4 A;  1KHL A;  5EGH A;  5HRT A;  4GTW A;  4KM4 A;  1EI6 A;  3NKP A;  5DLT A;  4TN0 A;  4GTX A;  3BDH A;  1ELY A;  3CMR A;  1EW9 A;  1ALH A;  1Y6V A;  1ZEF A;  4CXK A;  5LIA A;  1AJC A;  4LRB A;  3SZY A;  3BDG B;  2QZU A;  3T01 A;  3MK0 A;  4UOR A;  5LQQ A;  1ELZ A;  5KXA A;  3MK1 A;  4KAV A;  1O98 A;  5GRR A;  4QAX A;  3M8W A;  3UN5 A;  4ZG9 A;  2D1G A;  3NVL A;  4MY4 A;  3IDD A;  3NKO A;  5L0E A;  2ZKT A;  4N7T A;  1EW8 A;  2VQR A;  5IJS A;  4LRC A;  4UOP A;  5LRN A;  4NWX A;  2X98 A;  2GSO A;  4LRE A;  3UO0 A;  2IUC A;  3B5Q A;  1KH9 A;  4KJG A;  1E3C P;  2W5Q A;  5GOV A;  5TJ3 A;  1AJD A;  1ED8 A;  3A52 A;  1URA A;  1Y7A A;  3UN3 A;  1ALK A;  5C66 A;  2GSU A;  3T02 A;  3WBH A;  2GLQ A;  3IGZ B;  4GTZ A;  4CYR A;  3ED4 A;  4B56 A;  2IUC B;  3BDF A;  5L0B A;  2XR9 A;  1KH7 A;  1EW2 A;  5INH A;  3UN2 A;  4KJD A;  5K4P A;  3WAY A;  3NKN A;  1FSU A;  4UPK A;  5LRM A;  1ED9 A;  5L0K A;  3WAV A;  1HJK A;  1KH5 A;  4ZG7 A;  3IGY B;  1ZED A;  3TWZ A;  1E1Z P;  2RH6 A;  1ANI A;  3KD8 A;  4LRA A;  4NWJ A;  3LXQ A;  1P49 A;  2G9Y A;  2GSN A;  2XRG A;  3NKQ A;  1ELX A;  4FDI A;  1ZEB A;  3Q3Q A;  4CYS A;  2ANH A;  4UPL A;  4ZG6 A;  2W5W A;  4LR8 A;  3M7V A;  1ANJ A;  1ALJ A;  3UNY A;  1K7H A;  4UPH A;  3WAX A;  1SHQ A;  4LR2 A;  5DLW A;  3M8Y A;  1E33 P;  4CXU A;  1HDH A;  1KHN A;  2GA3 A;  3DYC A;  1AJB A;  2W5R A;  4LRD A;  4FDJ A;  3WAW A;  2W8D A;  5EGE A; 
#chains in the Genus database with same CATH homology
 4LR9 A;  3E2D A;  3OT9 A;  4MHX A;  5AJ9 A;  1N2K A;  1ALI A;  2IFY A;  4KAY A;  4CXS A;  2W8S A;  4MIV A;  3M8Z A;  1KHJ A;  1O99 A;  4GTY A;  2W5X A;  1AUK A;  3TX0 A;  1URB A;  1SHN A;  3TG0 A;  1E2S P;  4ZGA A;  3NKM A;  3DPC A;  4LRF A;  1EQJ A;  4LQY A;  5IJQ A;  3MK2 A;  3SZZ A;  2W5T A;  2W5V A;  3NKR A;  1AJA A;  4YR1 A;  1B8J A;  1EJJ A;  1HQA A;  2W5S A;  4UOO A;  4UPI A;  5DLV A;  3BDG A;  4LR7 A;  3T00 A;  1N2L A;  1KHK A;  1KH4 A;  1KHL A;  5EGH A;  5HRT A;  4GTW A;  4KM4 A;  1EI6 A;  3NKP A;  5DLT A;  4TN0 A;  4GTX A;  3BDH A;  1ELY A;  3CMR A;  1EW9 A;  1ALH A;  1Y6V A;  1ZEF A;  4CXK A;  5LIA A;  1AJC A;  4LRB A;  3SZY A;  3BDG B;  2QZU A;  3T01 A;  3MK0 A;  4UOR A;  5LQQ A;  1ELZ A;  5KXA A;  3MK1 A;  4KAV A;  1O98 A;  5GRR A;  4QAX A;  3M8W A;  3UN5 A;  4ZG9 A;  2D1G A;  3NVL A;  4MY4 A;  3IDD A;  3NKO A;  5L0E A;  2ZKT A;  4N7T A;  1EW8 A;  2VQR A;  5IJS A;  4LRC A;  4UOP A;  5LRN A;  4NWX A;  2X98 A;  2GSO A;  4LRE A;  3UO0 A;  2IUC A;  3B5Q A;  1KH9 A;  4KJG A;  1E3C P;  2W5Q A;  5GOV A;  5TJ3 A;  1AJD A;  1ED8 A;  3A52 A;  1URA A;  1Y7A A;  3UN3 A;  1ALK A;  5C66 A;  2GSU A;  3T02 A;  3WBH A;  2GLQ A;  3IGZ B;  4GTZ A;  4CYR A;  3ED4 A;  4B56 A;  2IUC B;  3BDF A;  5L0B A;  2XR9 A;  1KH7 A;  1EW2 A;  5INH A;  3UN2 A;  4KJD A;  5K4P A;  3WAY A;  3NKN A;  1FSU A;  4UPK A;  5LRM A;  1ED9 A;  5L0K A;  3WAV A;  1HJK A;  1KH5 A;  4ZG7 A;  3IGY B;  1ZED A;  3TWZ A;  1E1Z P;  2RH6 A;  1ANI A;  3KD8 A;  4LRA A;  4NWJ A;  3LXQ A;  1P49 A;  2G9Y A;  2GSN A;  2XRG A;  3NKQ A;  1ELX A;  4FDI A;  1ZEB A;  3Q3Q A;  4CYS A;  2ANH A;  4UPL A;  4ZG6 A;  2W5W A;  4LR8 A;  3M7V A;  1ANJ A;  1ALJ A;  3UNY A;  1K7H A;  4UPH A;  3WAX A;  1SHQ A;  4LR2 A;  5DLW A;  3M8Y A;  1E33 P;  4CXU A;  1HDH A;  1KHN A;  2GA3 A;  3DYC A;  1AJB A;  2W5R A;  4LRD A;  4FDJ A;  3WAW A;  2W8D A;  5EGE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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