1ED9A

Structure of e. coli alkaline phosphatase without the inorganic phosphate at 1.75a resolution
Total Genus 167
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
167
Knots found
sequence length
449
structure length
449
Chain Sequence
TPEMPVLENRAAQGDITAPGGARRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREQAQARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQDHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title A revised mechanism for the alkaline phosphatase reaction involving three metal ions.
pubmed doi rcsb
molecule keywords ALKALINE PHOSPHATASE
molecule tags Hydrolase
source organism Escherichia coli
total genus 167
structure length 449
sequence length 449
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2000-01-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1ed9A00
5EGEA 4UOPA 1ALKA 3DPCA 1ZEFA 4CYRA 3T02A 4CXUA 1AJCA 1EW2A 1HQAA 4UPLA 1Y7AA 4LRBA 5K4PA 4YR1A 5L0BA 4LQYA 3M7VA 4KAVA 4LR9A 1ZEDA 2W8DA 4LREA 2W5TA 3UN2A 3WAYA 1EW9A 4LR8A 4GTYA 3TX0A 2X98A 4UPKA 4CYSA 3BDFA 1EW8A 1E1ZP 1KH7A 5DLVA 1EJJA 2IUCB 2IUCA 1KHLA 2GSOA 4MIVA 5LIAA 1SHNA 1AJAA 3NKPA 4GTXA 3TWZA 5IJQA 3M8ZA 3IGYB 5DLTA 5C66A 1E2SP 4GTZA 4LRFA 2RH6A 4ZGAA 1ALJA 4KM4A 5IJSA 4UPIA 2IFYA 5KXAA 5EGHA 3WAVA 4KJGA 1FSUA 2GA3A 1N2LA 2QZUA 1ZEBA 3IGZB 5GOVA 1Y6VA 1AJDA 2W5WA 3NKOA 1O99A 4NWXA 2ANHA 3WBHA 1KHJA 4LRDA 4MHXA 4QAXA 1AUKA 1URAA 3T00A 2W5RA 1ALHA 5L0KA 1ELZA 1K7HA 4GTWA 4ZG6A 2W5SA 4B56A 3BDGB 3BDHA 3BDGA 4ZG9A 2XRGA 2W5XA 4CXSA 1URBA 1E3CP 4LR2A 1ELXA 3WAXA 1KH4A 3UN5A 5DLWA 1E33P 3MK0A 1N2KA 1KHNA 3MK2A 2W5QA 3SZZA 2D1GA 4TN0A 1ANJA 1P49A 3KD8A 4UORA 4UOOA 3ED4A 5AJ9A 2G9YA 3SZYA 3CMRA 4CXKA 3M8WA 3NKQA 5LRNA 4NWJA 4UPHA 5LQQA 1ED9A 3NKRA 3IDDA 3UNYA 1HJKA 4FDIA 1KHKA 4FDJA 2XR9A 1B8JA 1ED8A 1EI6A 3A52A 1ALIA 4KJDA 5INHA 5TJ3A 3NKMA 4LR7A 2GSUA 3UO0A 5L0EA 1EQJA 1AJBA 5GRRA 3NKNA 3B5QA 4ZG7A 4LRCA 1KH9A 2W8SA 3LXQA 2GSNA 4N7TA 3WAWA 3TG0A 1KH5A 1HDHA 3NVLA 5LRMA 4KAYA 4LRAA 4MY4A 3UN3A 3T01A 1SHQA 3E2DA 1O98A 2GLQA 3DYCA 2VQRA 3MK1A 2W5VA 2ZKTA 1ELYA 5HRTA 3Q3QA 1ANIA 3M8YA 3OT9A
chains in the Genus database with same CATH superfamily
5EGEA 4UOPA 1ALKA 3DPCA 1ZEFA 4CYRA 3T02A 4CXUA 1AJCA 1EW2A 1HQAA 4UPLA 1Y7AA 4LRBA 5K4PA 4YR1A 5L0BA 4LQYA 3M7VA 4KAVA 4LR9A 1ZEDA 2W8DA 4LREA 2W5TA 3UN2A 3WAYA 1EW9A 4LR8A 4GTYA 3TX0A 2X98A 4UPKA 4CYSA 3BDFA 1EW8A 1E1ZP 1KH7A 5DLVA 1EJJA 2IUCB 2IUCA 1KHLA 2GSOA 4MIVA 5LIAA 1SHNA 1AJAA 3NKPA 4GTXA 3TWZA 5IJQA 3M8ZA 3IGYB 5DLTA 5C66A 1E2SP 4GTZA 4LRFA 2RH6A 4ZGAA 1ALJA 4KM4A 5IJSA 4UPIA 2IFYA 5KXAA 5EGHA 3WAVA 4KJGA 1FSUA 2GA3A 1N2LA 2QZUA 1ZEBA 3IGZB 5GOVA 1Y6VA 1AJDA 2W5WA 3NKOA 1O99A 4NWXA 2ANHA 3WBHA 1KHJA 4LRDA 4MHXA 4QAXA 1AUKA 1URAA 3T00A 2W5RA 1ALHA 5L0KA 1ELZA 1K7HA 4GTWA 4ZG6A 2W5SA 4B56A 3BDGB 3BDHA 3BDGA 4ZG9A 2XRGA 2W5XA 4CXSA 1URBA 1E3CP 4LR2A 1ELXA 3WAXA 1KH4A 3UN5A 5DLWA 1E33P 3MK0A 1N2KA 1KHNA 3MK2A 2W5QA 3SZZA 2D1GA 4TN0A 1ANJA 1P49A 3KD8A 4UORA 4UOOA 3ED4A 5AJ9A 2G9YA 3SZYA 3CMRA 4CXKA 3M8WA 3NKQA 5LRNA 4NWJA 4UPHA 5LQQA 1ED9A 3NKRA 3IDDA 3UNYA 1HJKA 4FDIA 1KHKA 4FDJA 2XR9A 1B8JA 1ED8A 1EI6A 3A52A 1ALIA 4KJDA 5INHA 5TJ3A 3NKMA 4LR7A 2GSUA 3UO0A 5L0EA 1EQJA 1AJBA 5GRRA 3NKNA 3B5QA 4ZG7A 4LRCA 1KH9A 2W8SA 3LXQA 2GSNA 4N7TA 3WAWA 3TG0A 1KH5A 1HDHA 3NVLA 5LRMA 4KAYA 4LRAA 4MY4A 3UN3A 3T01A 1SHQA 3E2DA 1O98A 2GLQA 3DYCA 2VQRA 3MK1A 2W5VA 2ZKTA 1ELYA 5HRTA 3Q3QA 1ANIA 3M8YA 3OT9A
chains in the Genus database with same CATH topology
5EGEA 4UOPA 1ALKA 3DPCA 1ZEFA 4CYRA 3T02A 4CXUA 1AJCA 1EW2A 1HQAA 4UPLA 1Y7AA 4LRBA 5K4PA 4YR1A 5L0BA 4LQYA 3M7VA 4KAVA 4LR9A 1ZEDA 2W8DA 4LREA 2W5TA 3UN2A 3WAYA 1EW9A 4LR8A 4GTYA 3TX0A 2X98A 4UPKA 4CYSA 3BDFA 1EW8A 1E1ZP 1KH7A 5DLVA 1EJJA 2IUCB 2IUCA 1KHLA 2GSOA 4MIVA 5LIAA 1SHNA 1AJAA 3NKPA 4GTXA 3TWZA 5IJQA 3M8ZA 3IGYB 5DLTA 5C66A 1E2SP 4GTZA 4LRFA 2RH6A 4ZGAA 1ALJA 4KM4A 5IJSA 4UPIA 2IFYA 5KXAA 5EGHA 3WAVA 4KJGA 1FSUA 2GA3A 1N2LA 2QZUA 1ZEBA 3IGZB 5GOVA 1Y6VA 1AJDA 2W5WA 3NKOA 1O99A 4NWXA 2ANHA 3WBHA 1KHJA 4LRDA 4MHXA 4QAXA 1AUKA 1URAA 3T00A 2W5RA 1ALHA 5L0KA 1ELZA 1K7HA 4GTWA 4ZG6A 2W5SA 4B56A 3BDGB 3BDHA 3BDGA 4ZG9A 2XRGA 2W5XA 4CXSA 1URBA 1E3CP 4LR2A 1ELXA 3WAXA 1KH4A 3UN5A 5DLWA 1E33P 3MK0A 1N2KA 1KHNA 3MK2A 2W5QA 3SZZA 2D1GA 4TN0A 1ANJA 1P49A 3KD8A 4UORA 4UOOA 3ED4A 5AJ9A 2G9YA 3SZYA 3CMRA 4CXKA 3M8WA 3NKQA 5LRNA 4NWJA 4UPHA 5LQQA 1ED9A 3NKRA 3IDDA 3UNYA 1HJKA 4FDIA 1KHKA 4FDJA 2XR9A 1B8JA 1ED8A 1EI6A 3A52A 1ALIA 4KJDA 5INHA 5TJ3A 3NKMA 4LR7A 2GSUA 3UO0A 5L0EA 1EQJA 1AJBA 5GRRA 3NKNA 3B5QA 4ZG7A 4LRCA 1KH9A 2W8SA 3LXQA 2GSNA 4N7TA 3WAWA 3TG0A 1KH5A 1HDHA 3NVLA 5LRMA 4KAYA 4LRAA 4MY4A 3UN3A 3T01A 1SHQA 3E2DA 1O98A 2GLQA 3DYCA 2VQRA 3MK1A 2W5VA 2ZKTA 1ELYA 5HRTA 3Q3QA 1ANIA 3M8YA 3OT9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5EGE A;  4UOP A;  1ALK A;  3DPC A;  1ZEF A;  4CYR A;  3T02 A;  4CXU A;  1AJC A;  1EW2 A;  1HQA A;  4UPL A;  1Y7A A;  4LRB A;  5K4P A;  4YR1 A;  5L0B A;  4LQY A;  3M7V A;  4KAV A;  4LR9 A;  1ZED A;  2W8D A;  4LRE A;  2W5T A;  3UN2 A;  3WAY A;  1EW9 A;  4LR8 A;  4GTY A;  3TX0 A;  2X98 A;  4UPK A;  4CYS A;  3BDF A;  1EW8 A;  1E1Z P;  1KH7 A;  5DLV A;  1EJJ A;  2IUC B;  2IUC A;  1KHL A;  2GSO A;  4MIV A;  5LIA A;  1SHN A;  1AJA A;  3NKP A;  4GTX A;  3TWZ A;  5IJQ A;  3M8Z A;  3IGY B;  5DLT A;  5C66 A;  1E2S P;  4GTZ A;  4LRF A;  2RH6 A;  4ZGA A;  1ALJ A;  4KM4 A;  5IJS A;  4UPI A;  2IFY A;  5KXA A;  5EGH A;  3WAV A;  4KJG A;  1FSU A;  2GA3 A;  1N2L A;  2QZU A;  1ZEB A;  3IGZ B;  5GOV A;  1Y6V A;  1AJD A;  2W5W A;  3NKO A;  1O99 A;  4NWX A;  2ANH A;  3WBH A;  1KHJ A;  4LRD A;  4MHX A;  4QAX A;  1AUK A;  1URA A;  3T00 A;  2W5R A;  1ALH A;  5L0K A;  1ELZ A;  1K7H A;  4GTW A;  4ZG6 A;  2W5S A;  4B56 A;  3BDG B;  3BDH A;  3BDG A;  4ZG9 A;  2XRG A;  2W5X A;  4CXS A;  1URB A;  1E3C P;  4LR2 A;  1ELX A;  3WAX A;  1KH4 A;  3UN5 A;  5DLW A;  1E33 P;  3MK0 A;  1N2K A;  1KHN A;  3MK2 A;  2W5Q A;  3SZZ A;  2D1G A;  4TN0 A;  1ANJ A;  1P49 A;  3KD8 A;  4UOR A;  4UOO A;  3ED4 A;  5AJ9 A;  2G9Y A;  3SZY A;  3CMR A;  4CXK A;  3M8W A;  3NKQ A;  5LRN A;  4NWJ A;  4UPH A;  5LQQ A;  1ED9 A;  3NKR A;  3IDD A;  3UNY A;  1HJK A;  4FDI A;  1KHK A;  4FDJ A;  2XR9 A;  1B8J A;  1ED8 A;  1EI6 A;  3A52 A;  1ALI A;  4KJD A;  5INH A;  5TJ3 A;  3NKM A;  4LR7 A;  2GSU A;  3UO0 A;  5L0E A;  1EQJ A;  1AJB A;  5GRR A;  3NKN A;  3B5Q A;  4ZG7 A;  4LRC A;  1KH9 A;  2W8S A;  3LXQ A;  2GSN A;  4N7T A;  3WAW A;  3TG0 A;  1KH5 A;  1HDH A;  3NVL A;  5LRM A;  4KAY A;  4LRA A;  4MY4 A;  3UN3 A;  3T01 A;  1SHQ A;  3E2D A;  1O98 A;  2GLQ A;  3DYC A;  2VQR A;  3MK1 A;  2W5V A;  2ZKT A;  1ELY A;  5HRT A;  3Q3Q A;  1ANI A;  3M8Y A;  3OT9 A; 
#chains in the Genus database with same CATH topology
 5EGE A;  4UOP A;  1ALK A;  3DPC A;  1ZEF A;  4CYR A;  3T02 A;  4CXU A;  1AJC A;  1EW2 A;  1HQA A;  4UPL A;  1Y7A A;  4LRB A;  5K4P A;  4YR1 A;  5L0B A;  4LQY A;  3M7V A;  4KAV A;  4LR9 A;  1ZED A;  2W8D A;  4LRE A;  2W5T A;  3UN2 A;  3WAY A;  1EW9 A;  4LR8 A;  4GTY A;  3TX0 A;  2X98 A;  4UPK A;  4CYS A;  3BDF A;  1EW8 A;  1E1Z P;  1KH7 A;  5DLV A;  1EJJ A;  2IUC B;  2IUC A;  1KHL A;  2GSO A;  4MIV A;  5LIA A;  1SHN A;  1AJA A;  3NKP A;  4GTX A;  3TWZ A;  5IJQ A;  3M8Z A;  3IGY B;  5DLT A;  5C66 A;  1E2S P;  4GTZ A;  4LRF A;  2RH6 A;  4ZGA A;  1ALJ A;  4KM4 A;  5IJS A;  4UPI A;  2IFY A;  5KXA A;  5EGH A;  3WAV A;  4KJG A;  1FSU A;  2GA3 A;  1N2L A;  2QZU A;  1ZEB A;  3IGZ B;  5GOV A;  1Y6V A;  1AJD A;  2W5W A;  3NKO A;  1O99 A;  4NWX A;  2ANH A;  3WBH A;  1KHJ A;  4LRD A;  4MHX A;  4QAX A;  1AUK A;  1URA A;  3T00 A;  2W5R A;  1ALH A;  5L0K A;  1ELZ A;  1K7H A;  4GTW A;  4ZG6 A;  2W5S A;  4B56 A;  3BDG B;  3BDH A;  3BDG A;  4ZG9 A;  2XRG A;  2W5X A;  4CXS A;  1URB A;  1E3C P;  4LR2 A;  1ELX A;  3WAX A;  1KH4 A;  3UN5 A;  5DLW A;  1E33 P;  3MK0 A;  1N2K A;  1KHN A;  3MK2 A;  2W5Q A;  3SZZ A;  2D1G A;  4TN0 A;  1ANJ A;  1P49 A;  3KD8 A;  4UOR A;  4UOO A;  3ED4 A;  5AJ9 A;  2G9Y A;  3SZY A;  3CMR A;  4CXK A;  3M8W A;  3NKQ A;  5LRN A;  4NWJ A;  4UPH A;  5LQQ A;  1ED9 A;  3NKR A;  3IDD A;  3UNY A;  1HJK A;  4FDI A;  1KHK A;  4FDJ A;  2XR9 A;  1B8J A;  1ED8 A;  1EI6 A;  3A52 A;  1ALI A;  4KJD A;  5INH A;  5TJ3 A;  3NKM A;  4LR7 A;  2GSU A;  3UO0 A;  5L0E A;  1EQJ A;  1AJB A;  5GRR A;  3NKN A;  3B5Q A;  4ZG7 A;  4LRC A;  1KH9 A;  2W8S A;  3LXQ A;  2GSN A;  4N7T A;  3WAW A;  3TG0 A;  1KH5 A;  1HDH A;  3NVL A;  5LRM A;  4KAY A;  4LRA A;  4MY4 A;  3UN3 A;  3T01 A;  1SHQ A;  3E2D A;  1O98 A;  2GLQ A;  3DYC A;  2VQR A;  3MK1 A;  2W5V A;  2ZKT A;  1ELY A;  5HRT A;  3Q3Q A;  1ANI A;  3M8Y A;  3OT9 A; 
#chains in the Genus database with same CATH homology
 5EGE A;  4UOP A;  1ALK A;  3DPC A;  1ZEF A;  4CYR A;  3T02 A;  4CXU A;  1AJC A;  1EW2 A;  1HQA A;  4UPL A;  1Y7A A;  4LRB A;  5K4P A;  4YR1 A;  5L0B A;  4LQY A;  3M7V A;  4KAV A;  4LR9 A;  1ZED A;  2W8D A;  4LRE A;  2W5T A;  3UN2 A;  3WAY A;  1EW9 A;  4LR8 A;  4GTY A;  3TX0 A;  2X98 A;  4UPK A;  4CYS A;  3BDF A;  1EW8 A;  1E1Z P;  1KH7 A;  5DLV A;  1EJJ A;  2IUC B;  2IUC A;  1KHL A;  2GSO A;  4MIV A;  5LIA A;  1SHN A;  1AJA A;  3NKP A;  4GTX A;  3TWZ A;  5IJQ A;  3M8Z A;  3IGY B;  5DLT A;  5C66 A;  1E2S P;  4GTZ A;  4LRF A;  2RH6 A;  4ZGA A;  1ALJ A;  4KM4 A;  5IJS A;  4UPI A;  2IFY A;  5KXA A;  5EGH A;  3WAV A;  4KJG A;  1FSU A;  2GA3 A;  1N2L A;  2QZU A;  1ZEB A;  3IGZ B;  5GOV A;  1Y6V A;  1AJD A;  2W5W A;  3NKO A;  1O99 A;  4NWX A;  2ANH A;  3WBH A;  1KHJ A;  4LRD A;  4MHX A;  4QAX A;  1AUK A;  1URA A;  3T00 A;  2W5R A;  1ALH A;  5L0K A;  1ELZ A;  1K7H A;  4GTW A;  4ZG6 A;  2W5S A;  4B56 A;  3BDG B;  3BDH A;  3BDG A;  4ZG9 A;  2XRG A;  2W5X A;  4CXS A;  1URB A;  1E3C P;  4LR2 A;  1ELX A;  3WAX A;  1KH4 A;  3UN5 A;  5DLW A;  1E33 P;  3MK0 A;  1N2K A;  1KHN A;  3MK2 A;  2W5Q A;  3SZZ A;  2D1G A;  4TN0 A;  1ANJ A;  1P49 A;  3KD8 A;  4UOR A;  4UOO A;  3ED4 A;  5AJ9 A;  2G9Y A;  3SZY A;  3CMR A;  4CXK A;  3M8W A;  3NKQ A;  5LRN A;  4NWJ A;  4UPH A;  5LQQ A;  1ED9 A;  3NKR A;  3IDD A;  3UNY A;  1HJK A;  4FDI A;  1KHK A;  4FDJ A;  2XR9 A;  1B8J A;  1ED8 A;  1EI6 A;  3A52 A;  1ALI A;  4KJD A;  5INH A;  5TJ3 A;  3NKM A;  4LR7 A;  2GSU A;  3UO0 A;  5L0E A;  1EQJ A;  1AJB A;  5GRR A;  3NKN A;  3B5Q A;  4ZG7 A;  4LRC A;  1KH9 A;  2W8S A;  3LXQ A;  2GSN A;  4N7T A;  3WAW A;  3TG0 A;  1KH5 A;  1HDH A;  3NVL A;  5LRM A;  4KAY A;  4LRA A;  4MY4 A;  3UN3 A;  3T01 A;  1SHQ A;  3E2D A;  1O98 A;  2GLQ A;  3DYC A;  2VQR A;  3MK1 A;  2W5V A;  2ZKT A;  1ELY A;  5HRT A;  3Q3Q A;  1ANI A;  3M8Y A;  3OT9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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