1EJJ | Genus

Total Genus 196

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	196
Knots found	KnotProt 2.0: S +3₁
sequence length	508
structure length	508
Chain Sequence	KKPVALIILDGFALRDETYGNAVAQANKPNFDRYWNEYPHTTLKACGEAVGLPEGQMGNSEVGHLNIGAGRIVYQSLTRINIAIREGEFDRNETFLAAMNHVKQHGTSLHLFGLLSDGGVHSHIHHLYALLRLAAKEGVKRVYIHGFLDGRDVGPQTAPQYIKELQEKIKEYGVGEIATLSGRYYSMDRDKRWDRVEKAYRAMVYGEGPTYRDPLECIEDSYKHGIYDEFVLPSVIVREDGRPVATIQDNDAIIFYNFRPDRAIQISNTFTNEDFREFDRGPKHPKHLFFVCLTHFSETVAGYVAFKPTNLDNTIGEVLSQHGLRQLRIAETEKYPHVTFFMSGGREEEFPGEDRILINSPKVPTYDLKPEMSAYEVTDALLKEIEADKYDAIILNYANPDMVGHSGKLEPTIKAVEAVDECLGKVVDAILAKGGIAIITADHGNADEVLTPDGKPQTAHTTNPVPVIVTKKGIKLRDGGILGDLAPTMLDLLGLPQPKEMTGKSLIV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Isomerase
source organism	Geobacillus stearothermophilus
publication title	Structure and mechanism of action of a novel phosphoglycerate mutase from Bacillus stearothermophilus. pubmed doi rcsb
molecule keywords	PHOSPHOGLYCERATE MUTASE
total genus	196
structure length	508
sequence length	508
other databases	KnotProt 2.0: S +3₁
ec nomenclature	ec 5.4.2.12: Phosphoglycerate mutase (2,3-diphosphoglycerate-independent).
pdb deposition date	2000-03-02

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01676	Metalloenzyme	Metalloenzyme superfamily
A	PF06415	iPGM_N	BPG-independent PGAM N-terminus (iPGM_N)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.720.10	Alpha Beta	3-Layer(aba) Sandwich	Alkaline Phosphatase, subunit A	Alkaline Phosphatase, subunit A	1ejjA02
3.40.1450.10	Alpha Beta	3-Layer(aba) Sandwich	2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain	BPG-independent phosphoglycerate mutase, domain B	1ejjA01

3SZZA 4LQYA 5C66A 4CXSA 5EGHA 1HJKA 4LR9A 3Q3QA 5IJSA 3NVLA 3UN3A 3T02A 3WAVA 1ELZA 1AJAA 4ZG7A 1B8JA 2W5WA 1ANIA 4MHXA 4ZGAA 3MK2A 1E1ZP 4CXUA 4LRCA 3WBHA 1KH5A 4FDJA 3MK1A 4UOPA 5IJQA 2GSUA 4LRBA 3T01A 3UO0A 4UORA 3T00A 3WAWA 5LRNA 5LIAA 1E33P 4LR8A 1EJJA 4NWJA 5KXAA 3NKMA 2RH6A 3CMRA 2W8DA 4CYRA 4UPLA 3M8YA 1AJDA 3OT9A 2D1GA 3IGZB 1ALIA 5HRTA 1EI6A 4GTYA 3M7VA 1URBA 3WAYA 1ANJA 1ALKA 1HDHA 5EGEA 1HQAA 4KAVA 5LRMA 4UPIA 3SZYA 3UN2A 5DLWA 1EW2A 1AUKA 1E2SP 4N7TA 2ZKTA 4FDIA 5DLVA 5AJ9A 5LQQA 5GRRA 4LR2A 3A52A 5L0EA 1Y6VA 5GOVA 2IFYA 5L0BA 3WAXA 4KJDA 4ZG9A 5TJ3A 5INHA 1EW8A 3IGYB 2VQRA 2W5XA 1ELYA 2W5SA 4NWXA 4CXKA 1O98A 1ELXA 1AJCA 1K7HA 1ZEFA 4UPHA 4GTZA 4UOOA 5K4PA 3M8ZA 4KM4A 2GSOA 4KAYA 4UPKA 3LXQA 1E3CP 3BDGA 4B56A 5DLTA 4YR1A 5L0KA 1URAA 1KHLA 2GA3A 4LR7A 4KJGA 3B5QA 3DYCA 2XRGA 2W5TA 1AJBA 2X98A 3UNYA 3M8WA 1Y7AA 2QZUA 1FSUA 3BDHA 4LRDA 2IUCA 2XR9A 2W5RA 3NKPA 1KH4A 3IDDA 2GLQA 4QAXA 1KHNA 1KH7A 1ED9A 3TG0A 4MY4A 1ZEBA 2GSNA 4GTWA 1ALHA 4GTXA 2W8SA 3DPCA 3ED4A 1O99A 4LREA 3TX0A 1SHNA 1KHJA 1ED8A 1EW9A 4LRFA 1KH9A 2ANHA 1N2KA 3BDGB 1ZEDA 2W5VA 1N2LA 1SHQA 3NKOA 2W5QA 1P49A 3KD8A 3UN5A 4CYSA 3E2DA 3NKRA 3NKQA 3NKNA 3BDFA 1KHKA 1ALJA 3TWZA 4ZG6A 1EQJA 2IUCB 4LRAA 4TN0A 4MIVA 3MK0A 2G9YA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 3SZZ A;  4LQY A;  5C66 A;  4CXS A;  5EGH A;  1HJK A;  4LR9 A;  3Q3Q A;  5IJS A;  3NVL A;  3UN3 A;  3T02 A;  3WAV A;  1ELZ A;  1AJA A;  4ZG7 A;  1B8J A;  2W5W A;  1ANI A;  4MHX A;  4ZGA A;  3MK2 A;  1E1Z P;  4CXU A;  4LRC A;  3WBH A;  1KH5 A;  4FDJ A;  3MK1 A;  4UOP A;  5IJQ A;  2GSU A;  4LRB A;  3T01 A;  3UO0 A;  4UOR A;  3T00 A;  3WAW A;  5LRN A;  5LIA A;  1E33 P;  4LR8 A;  1EJJ A;  4NWJ A;  5KXA A;  3NKM A;  2RH6 A;  3CMR A;  2W8D A;  4CYR A;  4UPL A;  3M8Y A;  1AJD A;  3OT9 A;  2D1G A;  3IGZ B;  1ALI A;  5HRT A;  1EI6 A;  4GTY A;  3M7V A;  1URB A;  3WAY A;  1ANJ A;  1ALK A;  1HDH A;  5EGE A;  1HQA A;  4KAV A;  5LRM A;  4UPI A;  3SZY A;  3UN2 A;  5DLW A;  1EW2 A;  1AUK A;  1E2S P;  4N7T A;  2ZKT A;  4FDI A;  5DLV A;  5AJ9 A;  5LQQ A;  5GRR A;  4LR2 A;  3A52 A;  5L0E A;  1Y6V A;  5GOV A;  2IFY A;  5L0B A;  3WAX A;  4KJD A;  4ZG9 A;  5TJ3 A;  5INH A;  1EW8 A;  3IGY B;  2VQR A;  2W5X A;  1ELY A;  2W5S A;  4NWX A;  4CXK A;  1O98 A;  1ELX A;  1AJC A;  1K7H A;  1ZEF A;  4UPH A;  4GTZ A;  4UOO A;  5K4P A;  3M8Z A;  4KM4 A;  2GSO A;  4KAY A;  4UPK A;  3LXQ A;  1E3C P;  3BDG A;  4B56 A;  5DLT A;  4YR1 A;  5L0K A;  1URA A;  1KHL A;  2GA3 A;  4LR7 A;  4KJG A;  3B5Q A;  3DYC A;  2XRG A;  2W5T A;  1AJB A;  2X98 A;  3UNY A;  3M8W A;  1Y7A A;  2QZU A;  1FSU A;  3BDH A;  4LRD A;  2IUC A;  2XR9 A;  2W5R A;  3NKP A;  1KH4 A;  3IDD A;  2GLQ A;  4QAX A;  1KHN A;  1KH7 A;  1ED9 A;  3TG0 A;  4MY4 A;  1ZEB A;  2GSN A;  4GTW A;  1ALH A;  4GTX A;  2W8S A;  3DPC A;  3ED4 A;  1O99 A;  4LRE A;  3TX0 A;  1SHN A;  1KHJ A;  1ED8 A;  1EW9 A;  4LRF A;  1KH9 A;  2ANH A;  1N2K A;  3BDG B;  1ZED A;  2W5V A;  1N2L A;  1SHQ A;  3NKO A;  2W5Q A;  1P49 A;  3KD8 A;  3UN5 A;  4CYS A;  3E2D A;  3NKR A;  3NKQ A;  3NKN A;  3BDF A;  1KHK A;  1ALJ A;  3TWZ A;  4ZG6 A;  1EQJ A;  2IUC B;  4LRA A;  4TN0 A;  4MIV A;  3MK0 A;  2G9Y A; 
#chains in the Genus database with same CATH topology
 3SZZ A;  4LQY A;  5C66 A;  4CXS A;  5EGH A;  1HJK A;  4LR9 A;  3Q3Q A;  5IJS A;  3NVL A;  3UN3 A;  3T02 A;  3WAV A;  1ELZ A;  1AJA A;  4ZG7 A;  1B8J A;  2W5W A;  1ANI A;  4MHX A;  4ZGA A;  3MK2 A;  1E1Z P;  4CXU A;  4LRC A;  3WBH A;  1KH5 A;  4FDJ A;  3MK1 A;  4UOP A;  5IJQ A;  2GSU A;  4LRB A;  3T01 A;  3UO0 A;  4UOR A;  3T00 A;  3WAW A;  5LRN A;  5LIA A;  1E33 P;  4LR8 A;  1EJJ A;  4NWJ A;  5KXA A;  3NKM A;  2RH6 A;  3CMR A;  2W8D A;  4CYR A;  4UPL A;  3M8Y A;  1AJD A;  3OT9 A;  2D1G A;  3IGZ B;  1ALI A;  5HRT A;  1EI6 A;  4GTY A;  3M7V A;  1URB A;  3WAY A;  1ANJ A;  1ALK A;  1HDH A;  5EGE A;  1HQA A;  4KAV A;  5LRM A;  4UPI A;  3SZY A;  3UN2 A;  5DLW A;  1EW2 A;  1AUK A;  1E2S P;  4N7T A;  2ZKT A;  4FDI A;  5DLV A;  5AJ9 A;  5LQQ A;  5GRR A;  4LR2 A;  3A52 A;  5L0E A;  1Y6V A;  5GOV A;  2IFY A;  5L0B A;  3WAX A;  4KJD A;  4ZG9 A;  5TJ3 A;  5INH A;  1EW8 A;  3IGY B;  2VQR A;  2W5X A;  1ELY A;  2W5S A;  4NWX A;  4CXK A;  1O98 A;  1ELX A;  1AJC A;  1K7H A;  1ZEF A;  4UPH A;  4GTZ A;  4UOO A;  5K4P A;  3M8Z A;  4KM4 A;  2GSO A;  4KAY A;  4UPK A;  3LXQ A;  1E3C P;  3BDG A;  4B56 A;  5DLT A;  4YR1 A;  5L0K A;  1URA A;  1KHL A;  2GA3 A;  4LR7 A;  4KJG A;  3B5Q A;  3DYC A;  2XRG A;  2W5T A;  1AJB A;  2X98 A;  3UNY A;  3M8W A;  1Y7A A;  2QZU A;  1FSU A;  3BDH A;  4LRD A;  2IUC A;  2XR9 A;  2W5R A;  3NKP A;  1KH4 A;  3IDD A;  2GLQ A;  4QAX A;  1KHN A;  1KH7 A;  1ED9 A;  3TG0 A;  4MY4 A;  1ZEB A;  2GSN A;  4GTW A;  1ALH A;  4GTX A;  2W8S A;  3DPC A;  3ED4 A;  1O99 A;  4LRE A;  3TX0 A;  1SHN A;  1KHJ A;  1ED8 A;  1EW9 A;  4LRF A;  1KH9 A;  2ANH A;  1N2K A;  3BDG B;  1ZED A;  2W5V A;  1N2L A;  1SHQ A;  3NKO A;  2W5Q A;  1P49 A;  3KD8 A;  3UN5 A;  4CYS A;  3E2D A;  3NKR A;  3NKQ A;  3NKN A;  3BDF A;  1KHK A;  1ALJ A;  3TWZ A;  4ZG6 A;  1EQJ A;  2IUC B;  4LRA A;  4TN0 A;  4MIV A;  3MK0 A;  2G9Y A; 
#chains in the Genus database with same CATH homology
 3SZZ A;  4LQY A;  5C66 A;  4CXS A;  5EGH A;  1HJK A;  4LR9 A;  3Q3Q A;  5IJS A;  3NVL A;  3UN3 A;  3T02 A;  3WAV A;  1ELZ A;  1AJA A;  4ZG7 A;  1B8J A;  2W5W A;  1ANI A;  4MHX A;  4ZGA A;  3MK2 A;  1E1Z P;  4CXU A;  4LRC A;  3WBH A;  1KH5 A;  4FDJ A;  3MK1 A;  4UOP A;  5IJQ A;  2GSU A;  4LRB A;  3T01 A;  3UO0 A;  4UOR A;  3T00 A;  3WAW A;  5LRN A;  5LIA A;  1E33 P;  4LR8 A;  1EJJ A;  4NWJ A;  5KXA A;  3NKM A;  2RH6 A;  3CMR A;  2W8D A;  4CYR A;  4UPL A;  3M8Y A;  1AJD A;  3OT9 A;  2D1G A;  3IGZ B;  1ALI A;  5HRT A;  1EI6 A;  4GTY A;  3M7V A;  1URB A;  3WAY A;  1ANJ A;  1ALK A;  1HDH A;  5EGE A;  1HQA A;  4KAV A;  5LRM A;  4UPI A;  3SZY A;  3UN2 A;  5DLW A;  1EW2 A;  1AUK A;  1E2S P;  4N7T A;  2ZKT A;  4FDI A;  5DLV A;  5AJ9 A;  5LQQ A;  5GRR A;  4LR2 A;  3A52 A;  5L0E A;  1Y6V A;  5GOV A;  2IFY A;  5L0B A;  3WAX A;  4KJD A;  4ZG9 A;  5TJ3 A;  5INH A;  1EW8 A;  3IGY B;  2VQR A;  2W5X A;  1ELY A;  2W5S A;  4NWX A;  4CXK A;  1O98 A;  1ELX A;  1AJC A;  1K7H A;  1ZEF A;  4UPH A;  4GTZ A;  4UOO A;  5K4P A;  3M8Z A;  4KM4 A;  2GSO A;  4KAY A;  4UPK A;  3LXQ A;  1E3C P;  3BDG A;  4B56 A;  5DLT A;  4YR1 A;  5L0K A;  1URA A;  1KHL A;  2GA3 A;  4LR7 A;  4KJG A;  3B5Q A;  3DYC A;  2XRG A;  2W5T A;  1AJB A;  2X98 A;  3UNY A;  3M8W A;  1Y7A A;  2QZU A;  1FSU A;  3BDH A;  4LRD A;  2IUC A;  2XR9 A;  2W5R A;  3NKP A;  1KH4 A;  3IDD A;  2GLQ A;  4QAX A;  1KHN A;  1KH7 A;  1ED9 A;  3TG0 A;  4MY4 A;  1ZEB A;  2GSN A;  4GTW A;  1ALH A;  4GTX A;  2W8S A;  3DPC A;  3ED4 A;  1O99 A;  4LRE A;  3TX0 A;  1SHN A;  1KHJ A;  1ED8 A;  1EW9 A;  4LRF A;  1KH9 A;  2ANH A;  1N2K A;  3BDG B;  1ZED A;  2W5V A;  1N2L A;  1SHQ A;  3NKO A;  2W5Q A;  1P49 A;  3KD8 A;  3UN5 A;  4CYS A;  3E2D A;  3NKR A;  3NKQ A;  3NKN A;  3BDF A;  1KHK A;  1ALJ A;  3TWZ A;  4ZG6 A;  1EQJ A;  2IUC B;  4LRA A;  4TN0 A;  4MIV A;  3MK0 A;  2G9Y A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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1EJJA

Total Genus

Knots found

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations