1K7HA

Crystal structure of shrimp alkaline phosphatase
Total Genus 188
50100150200250300350400450050100150
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
188
Knots found
sequence length
476
structure length
476
Chain Sequence
EEDKAYWNKDAQDALDKQLGIKLREKQAKNVIFFLGDGMSLSTVTAARIYKGGLTGKFEREKISWEEFDFAALSKTYNTDKQVTDSAASATAYLTGVKTNQGVIGLDANTVRTNCSYQLDESLFTYSIAHWFQEAGRSTGVVTSTRVTHATPAGTYAHVADRDWENDSDVVHDREDPEICDDIAEQLVFREPGKNFKVIMGGGRRGFFPEEALDIEDGIPGEREDGKHLITDWLDDKASQGATASYVWNRDDLLAVDIANTDYLMGLFSYTHLDTVLTRDAEMDPTLPEMTKVAIEMLTKDENGFFLLVEGGRIDHMHHANQIRQSLAETLDMEEAVSMALSMTDPEETIILVTADHGHTLTITGYADRNTDILDFAGISDLDDRRYTILDYGSGPGYHITEDGKRYEPTEEDLKDINFRYASAAPKHSATHDGTDVGIWVNGPFAHLFTGVYEENYIPHALAYAACVGTGRTFCD
50100150200250300350400450400300200100
050100150Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
publication title The 1.9 A Crystal Structure of Heat-Labile Shrimp Alkaline Phosphatase
pubmed doi rcsb
molecule keywords ALKALINE PHOSPHATASE
total genus 188
structure length 476
sequence length 476
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2001-10-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1k7hA00
3T01A 3NVLA 3NKMA 4ZG7A 3UN5A 3M8YA 3IGZB 5LIAA 1O99A 3WAVA 1Y6VA 4MIVA 2W8SA 5EGHA 4ZG6A 4LRBA 1SHQA 4QAXA 4LRDA 2G9YA 1AJDA 4KAYA 2XR9A 5LRMA 1KHKA 5L0BA 3Q3QA 3UNYA 1HQAA 2IUCB 2GLQA 1EI6A 1EW9A 3BDHA 1FSUA 1P49A 1URAA 3BDGB 3MK0A 4NWXA 1KHLA 1ELZA 4GTYA 3OT9A 4LRAA 5L0EA 1KH4A 1K7HA 4LQYA 5DLVA 3UN2A 5IJSA 4UOOA 2W5VA 4NWJA 1N2KA 1ELXA 1HDHA 3ED4A 1ZEBA 4KM4A 2ZKTA 3M8ZA 5AJ9A 3T00A 5K4PA 4TN0A 1E1ZP 3LXQA 5GOVA 3IDDA 3TG0A 1AJBA 2GA3A 4MHXA 3KD8A 3SZYA 5C66A 2VQRA 3UO0A 1E2SP 4GTWA 4GTXA 1ALIA 2W5SA 3MK1A 4LR9A 3TX0A 2ANHA 3M8WA 4LRFA 2XRGA 4LR7A 1SHNA 1EJJA 1AJCA 1KHJA 1HJKA 4LREA 2IUCA 1ALHA 4FDJA 3WBHA 1ED9A 3BDGA 4YR1A 2W5WA 5IJQA 3E2DA 1EW8A 2D1GA 1Y7AA 2GSUA 1N2LA 5DLTA 1ANJA 3DYCA 4KAVA 4LR8A 1ZEDA 3WAYA 1ZEFA 2W5QA 4CXKA 5KXAA 3NKRA 1E33P 1ANIA 2RH6A 4ZGAA 4MY4A 4B56A 3TWZA 3IGYB 3B5QA 2IFYA 4CYRA 5L0KA 4CYSA 1ED8A 4UORA 4UPKA 2W5RA 3UN3A 3WAWA 3NKPA 1EQJA 2W5TA 5DLWA 2QZUA 4KJGA 4ZG9A 2GSNA 5INHA 2X98A 4UPHA 2GSOA 3MK2A 3NKNA 4LRCA 1O98A 1AUKA 1URBA 1ALJA 3NKQA 1KH9A 3CMRA 2W5XA 5LQQA 3T02A 4KJDA 1KH5A 4CXSA 4UOPA 5TJ3A 4LR2A 5EGEA 3DPCA 1ALKA 4FDIA 4UPIA 4UPLA 3SZZA 3A52A 4CXUA 4GTZA 4N7TA 5LRNA 1B8JA 3BDFA 1E3CP 3WAXA 3M7VA 1AJAA 3NKOA 5GRRA 1EW2A 2W8DA 1ELYA 1KH7A 1KHNA 5HRTA
chains in the Genus database with same CATH superfamily
3T01A 3NVLA 3NKMA 4ZG7A 3UN5A 3M8YA 3IGZB 5LIAA 1O99A 3WAVA 1Y6VA 4MIVA 2W8SA 5EGHA 4ZG6A 4LRBA 1SHQA 4QAXA 4LRDA 2G9YA 1AJDA 4KAYA 2XR9A 5LRMA 1KHKA 5L0BA 3Q3QA 3UNYA 1HQAA 2IUCB 2GLQA 1EI6A 1EW9A 3BDHA 1FSUA 1P49A 1URAA 3BDGB 3MK0A 4NWXA 1KHLA 1ELZA 4GTYA 3OT9A 4LRAA 5L0EA 1KH4A 1K7HA 4LQYA 5DLVA 3UN2A 5IJSA 4UOOA 2W5VA 4NWJA 1N2KA 1ELXA 1HDHA 3ED4A 1ZEBA 4KM4A 2ZKTA 3M8ZA 5AJ9A 3T00A 5K4PA 4TN0A 1E1ZP 3LXQA 5GOVA 3IDDA 3TG0A 1AJBA 2GA3A 4MHXA 3KD8A 3SZYA 5C66A 2VQRA 3UO0A 1E2SP 4GTWA 4GTXA 1ALIA 2W5SA 3MK1A 4LR9A 3TX0A 2ANHA 3M8WA 4LRFA 2XRGA 4LR7A 1SHNA 1EJJA 1AJCA 1KHJA 1HJKA 4LREA 2IUCA 1ALHA 4FDJA 3WBHA 1ED9A 3BDGA 4YR1A 2W5WA 5IJQA 3E2DA 1EW8A 2D1GA 1Y7AA 2GSUA 1N2LA 5DLTA 1ANJA 3DYCA 4KAVA 4LR8A 1ZEDA 3WAYA 1ZEFA 2W5QA 4CXKA 5KXAA 3NKRA 1E33P 1ANIA 2RH6A 4ZGAA 4MY4A 4B56A 3TWZA 3IGYB 3B5QA 2IFYA 4CYRA 5L0KA 4CYSA 1ED8A 4UORA 4UPKA 2W5RA 3UN3A 3WAWA 3NKPA 1EQJA 2W5TA 5DLWA 2QZUA 4KJGA 4ZG9A 2GSNA 5INHA 2X98A 4UPHA 2GSOA 3MK2A 3NKNA 4LRCA 1O98A 1AUKA 1URBA 1ALJA 3NKQA 1KH9A 3CMRA 2W5XA 5LQQA 3T02A 4KJDA 1KH5A 4CXSA 4UOPA 5TJ3A 4LR2A 5EGEA 3DPCA 1ALKA 4FDIA 4UPIA 4UPLA 3SZZA 3A52A 4CXUA 4GTZA 4N7TA 5LRNA 1B8JA 3BDFA 1E3CP 3WAXA 3M7VA 1AJAA 3NKOA 5GRRA 1EW2A 2W8DA 1ELYA 1KH7A 1KHNA 5HRTA
chains in the Genus database with same CATH topology
3T01A 3NVLA 3NKMA 4ZG7A 3UN5A 3M8YA 3IGZB 5LIAA 1O99A 3WAVA 1Y6VA 4MIVA 2W8SA 5EGHA 4ZG6A 4LRBA 1SHQA 4QAXA 4LRDA 2G9YA 1AJDA 4KAYA 2XR9A 5LRMA 1KHKA 5L0BA 3Q3QA 3UNYA 1HQAA 2IUCB 2GLQA 1EI6A 1EW9A 3BDHA 1FSUA 1P49A 1URAA 3BDGB 3MK0A 4NWXA 1KHLA 1ELZA 4GTYA 3OT9A 4LRAA 5L0EA 1KH4A 1K7HA 4LQYA 5DLVA 3UN2A 5IJSA 4UOOA 2W5VA 4NWJA 1N2KA 1ELXA 1HDHA 3ED4A 1ZEBA 4KM4A 2ZKTA 3M8ZA 5AJ9A 3T00A 5K4PA 4TN0A 1E1ZP 3LXQA 5GOVA 3IDDA 3TG0A 1AJBA 2GA3A 4MHXA 3KD8A 3SZYA 5C66A 2VQRA 3UO0A 1E2SP 4GTWA 4GTXA 1ALIA 2W5SA 3MK1A 4LR9A 3TX0A 2ANHA 3M8WA 4LRFA 2XRGA 4LR7A 1SHNA 1EJJA 1AJCA 1KHJA 1HJKA 4LREA 2IUCA 1ALHA 4FDJA 3WBHA 1ED9A 3BDGA 4YR1A 2W5WA 5IJQA 3E2DA 1EW8A 2D1GA 1Y7AA 2GSUA 1N2LA 5DLTA 1ANJA 3DYCA 4KAVA 4LR8A 1ZEDA 3WAYA 1ZEFA 2W5QA 4CXKA 5KXAA 3NKRA 1E33P 1ANIA 2RH6A 4ZGAA 4MY4A 4B56A 3TWZA 3IGYB 3B5QA 2IFYA 4CYRA 5L0KA 4CYSA 1ED8A 4UORA 4UPKA 2W5RA 3UN3A 3WAWA 3NKPA 1EQJA 2W5TA 5DLWA 2QZUA 4KJGA 4ZG9A 2GSNA 5INHA 2X98A 4UPHA 2GSOA 3MK2A 3NKNA 4LRCA 1O98A 1AUKA 1URBA 1ALJA 3NKQA 1KH9A 3CMRA 2W5XA 5LQQA 3T02A 4KJDA 1KH5A 4CXSA 4UOPA 5TJ3A 4LR2A 5EGEA 3DPCA 1ALKA 4FDIA 4UPIA 4UPLA 3SZZA 3A52A 4CXUA 4GTZA 4N7TA 5LRNA 1B8JA 3BDFA 1E3CP 3WAXA 3M7VA 1AJAA 3NKOA 5GRRA 1EW2A 2W8DA 1ELYA 1KH7A 1KHNA 5HRTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3T01 A;  3NVL A;  3NKM A;  4ZG7 A;  3UN5 A;  3M8Y A;  3IGZ B;  5LIA A;  1O99 A;  3WAV A;  1Y6V A;  4MIV A;  2W8S A;  5EGH A;  4ZG6 A;  4LRB A;  1SHQ A;  4QAX A;  4LRD A;  2G9Y A;  1AJD A;  4KAY A;  2XR9 A;  5LRM A;  1KHK A;  5L0B A;  3Q3Q A;  3UNY A;  1HQA A;  2IUC B;  2GLQ A;  1EI6 A;  1EW9 A;  3BDH A;  1FSU A;  1P49 A;  1URA A;  3BDG B;  3MK0 A;  4NWX A;  1KHL A;  1ELZ A;  4GTY A;  3OT9 A;  4LRA A;  5L0E A;  1KH4 A;  1K7H A;  4LQY A;  5DLV A;  3UN2 A;  5IJS A;  4UOO A;  2W5V A;  4NWJ A;  1N2K A;  1ELX A;  1HDH A;  3ED4 A;  1ZEB A;  4KM4 A;  2ZKT A;  3M8Z A;  5AJ9 A;  3T00 A;  5K4P A;  4TN0 A;  1E1Z P;  3LXQ A;  5GOV A;  3IDD A;  3TG0 A;  1AJB A;  2GA3 A;  4MHX A;  3KD8 A;  3SZY A;  5C66 A;  2VQR A;  3UO0 A;  1E2S P;  4GTW A;  4GTX A;  1ALI A;  2W5S A;  3MK1 A;  4LR9 A;  3TX0 A;  2ANH A;  3M8W A;  4LRF A;  2XRG A;  4LR7 A;  1SHN A;  1EJJ A;  1AJC A;  1KHJ A;  1HJK A;  4LRE A;  2IUC A;  1ALH A;  4FDJ A;  3WBH A;  1ED9 A;  3BDG A;  4YR1 A;  2W5W A;  5IJQ A;  3E2D A;  1EW8 A;  2D1G A;  1Y7A A;  2GSU A;  1N2L A;  5DLT A;  1ANJ A;  3DYC A;  4KAV A;  4LR8 A;  1ZED A;  3WAY A;  1ZEF A;  2W5Q A;  4CXK A;  5KXA A;  3NKR A;  1E33 P;  1ANI A;  2RH6 A;  4ZGA A;  4MY4 A;  4B56 A;  3TWZ A;  3IGY B;  3B5Q A;  2IFY A;  4CYR A;  5L0K A;  4CYS A;  1ED8 A;  4UOR A;  4UPK A;  2W5R A;  3UN3 A;  3WAW A;  3NKP A;  1EQJ A;  2W5T A;  5DLW A;  2QZU A;  4KJG A;  4ZG9 A;  2GSN A;  5INH A;  2X98 A;  4UPH A;  2GSO A;  3MK2 A;  3NKN A;  4LRC A;  1O98 A;  1AUK A;  1URB A;  1ALJ A;  3NKQ A;  1KH9 A;  3CMR A;  2W5X A;  5LQQ A;  3T02 A;  4KJD A;  1KH5 A;  4CXS A;  4UOP A;  5TJ3 A;  4LR2 A;  5EGE A;  3DPC A;  1ALK A;  4FDI A;  4UPI A;  4UPL A;  3SZZ A;  3A52 A;  4CXU A;  4GTZ A;  4N7T A;  5LRN A;  1B8J A;  3BDF A;  1E3C P;  3WAX A;  3M7V A;  1AJA A;  3NKO A;  5GRR A;  1EW2 A;  2W8D A;  1ELY A;  1KH7 A;  1KHN A;  5HRT A; 
#chains in the Genus database with same CATH topology
 3T01 A;  3NVL A;  3NKM A;  4ZG7 A;  3UN5 A;  3M8Y A;  3IGZ B;  5LIA A;  1O99 A;  3WAV A;  1Y6V A;  4MIV A;  2W8S A;  5EGH A;  4ZG6 A;  4LRB A;  1SHQ A;  4QAX A;  4LRD A;  2G9Y A;  1AJD A;  4KAY A;  2XR9 A;  5LRM A;  1KHK A;  5L0B A;  3Q3Q A;  3UNY A;  1HQA A;  2IUC B;  2GLQ A;  1EI6 A;  1EW9 A;  3BDH A;  1FSU A;  1P49 A;  1URA A;  3BDG B;  3MK0 A;  4NWX A;  1KHL A;  1ELZ A;  4GTY A;  3OT9 A;  4LRA A;  5L0E A;  1KH4 A;  1K7H A;  4LQY A;  5DLV A;  3UN2 A;  5IJS A;  4UOO A;  2W5V A;  4NWJ A;  1N2K A;  1ELX A;  1HDH A;  3ED4 A;  1ZEB A;  4KM4 A;  2ZKT A;  3M8Z A;  5AJ9 A;  3T00 A;  5K4P A;  4TN0 A;  1E1Z P;  3LXQ A;  5GOV A;  3IDD A;  3TG0 A;  1AJB A;  2GA3 A;  4MHX A;  3KD8 A;  3SZY A;  5C66 A;  2VQR A;  3UO0 A;  1E2S P;  4GTW A;  4GTX A;  1ALI A;  2W5S A;  3MK1 A;  4LR9 A;  3TX0 A;  2ANH A;  3M8W A;  4LRF A;  2XRG A;  4LR7 A;  1SHN A;  1EJJ A;  1AJC A;  1KHJ A;  1HJK A;  4LRE A;  2IUC A;  1ALH A;  4FDJ A;  3WBH A;  1ED9 A;  3BDG A;  4YR1 A;  2W5W A;  5IJQ A;  3E2D A;  1EW8 A;  2D1G A;  1Y7A A;  2GSU A;  1N2L A;  5DLT A;  1ANJ A;  3DYC A;  4KAV A;  4LR8 A;  1ZED A;  3WAY A;  1ZEF A;  2W5Q A;  4CXK A;  5KXA A;  3NKR A;  1E33 P;  1ANI A;  2RH6 A;  4ZGA A;  4MY4 A;  4B56 A;  3TWZ A;  3IGY B;  3B5Q A;  2IFY A;  4CYR A;  5L0K A;  4CYS A;  1ED8 A;  4UOR A;  4UPK A;  2W5R A;  3UN3 A;  3WAW A;  3NKP A;  1EQJ A;  2W5T A;  5DLW A;  2QZU A;  4KJG A;  4ZG9 A;  2GSN A;  5INH A;  2X98 A;  4UPH A;  2GSO A;  3MK2 A;  3NKN A;  4LRC A;  1O98 A;  1AUK A;  1URB A;  1ALJ A;  3NKQ A;  1KH9 A;  3CMR A;  2W5X A;  5LQQ A;  3T02 A;  4KJD A;  1KH5 A;  4CXS A;  4UOP A;  5TJ3 A;  4LR2 A;  5EGE A;  3DPC A;  1ALK A;  4FDI A;  4UPI A;  4UPL A;  3SZZ A;  3A52 A;  4CXU A;  4GTZ A;  4N7T A;  5LRN A;  1B8J A;  3BDF A;  1E3C P;  3WAX A;  3M7V A;  1AJA A;  3NKO A;  5GRR A;  1EW2 A;  2W8D A;  1ELY A;  1KH7 A;  1KHN A;  5HRT A; 
#chains in the Genus database with same CATH homology
 3T01 A;  3NVL A;  3NKM A;  4ZG7 A;  3UN5 A;  3M8Y A;  3IGZ B;  5LIA A;  1O99 A;  3WAV A;  1Y6V A;  4MIV A;  2W8S A;  5EGH A;  4ZG6 A;  4LRB A;  1SHQ A;  4QAX A;  4LRD A;  2G9Y A;  1AJD A;  4KAY A;  2XR9 A;  5LRM A;  1KHK A;  5L0B A;  3Q3Q A;  3UNY A;  1HQA A;  2IUC B;  2GLQ A;  1EI6 A;  1EW9 A;  3BDH A;  1FSU A;  1P49 A;  1URA A;  3BDG B;  3MK0 A;  4NWX A;  1KHL A;  1ELZ A;  4GTY A;  3OT9 A;  4LRA A;  5L0E A;  1KH4 A;  1K7H A;  4LQY A;  5DLV A;  3UN2 A;  5IJS A;  4UOO A;  2W5V A;  4NWJ A;  1N2K A;  1ELX A;  1HDH A;  3ED4 A;  1ZEB A;  4KM4 A;  2ZKT A;  3M8Z A;  5AJ9 A;  3T00 A;  5K4P A;  4TN0 A;  1E1Z P;  3LXQ A;  5GOV A;  3IDD A;  3TG0 A;  1AJB A;  2GA3 A;  4MHX A;  3KD8 A;  3SZY A;  5C66 A;  2VQR A;  3UO0 A;  1E2S P;  4GTW A;  4GTX A;  1ALI A;  2W5S A;  3MK1 A;  4LR9 A;  3TX0 A;  2ANH A;  3M8W A;  4LRF A;  2XRG A;  4LR7 A;  1SHN A;  1EJJ A;  1AJC A;  1KHJ A;  1HJK A;  4LRE A;  2IUC A;  1ALH A;  4FDJ A;  3WBH A;  1ED9 A;  3BDG A;  4YR1 A;  2W5W A;  5IJQ A;  3E2D A;  1EW8 A;  2D1G A;  1Y7A A;  2GSU A;  1N2L A;  5DLT A;  1ANJ A;  3DYC A;  4KAV A;  4LR8 A;  1ZED A;  3WAY A;  1ZEF A;  2W5Q A;  4CXK A;  5KXA A;  3NKR A;  1E33 P;  1ANI A;  2RH6 A;  4ZGA A;  4MY4 A;  4B56 A;  3TWZ A;  3IGY B;  3B5Q A;  2IFY A;  4CYR A;  5L0K A;  4CYS A;  1ED8 A;  4UOR A;  4UPK A;  2W5R A;  3UN3 A;  3WAW A;  3NKP A;  1EQJ A;  2W5T A;  5DLW A;  2QZU A;  4KJG A;  4ZG9 A;  2GSN A;  5INH A;  2X98 A;  4UPH A;  2GSO A;  3MK2 A;  3NKN A;  4LRC A;  1O98 A;  1AUK A;  1URB A;  1ALJ A;  3NKQ A;  1KH9 A;  3CMR A;  2W5X A;  5LQQ A;  3T02 A;  4KJD A;  1KH5 A;  4CXS A;  4UOP A;  5TJ3 A;  4LR2 A;  5EGE A;  3DPC A;  1ALK A;  4FDI A;  4UPI A;  4UPL A;  3SZZ A;  3A52 A;  4CXU A;  4GTZ A;  4N7T A;  5LRN A;  1B8J A;  3BDF A;  1E3C P;  3WAX A;  3M7V A;  1AJA A;  3NKO A;  5GRR A;  1EW2 A;  2W8D A;  1ELY A;  1KH7 A;  1KHN A;  5HRT A; 
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