1KHNA

E. coli alkaline phosphatase mutant (d153hd330n) zinc form
Total Genus 142
50100150200250300350400020406080100120140
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
142
Knots found
sequence length
444
structure length
444
Chain Sequence
VLENRAAQGNITAPGGARRLTGDQTAALRNSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQHATPAALVAHVTSRKCYGPSATSQKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREEAEARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQNHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK
50100150200250300350400400300200100
020406080100120140Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTII1 (18-21)AH2 (55-66)TIV1 (7-10)TI1 (15-18)TI2 (20-23)AH1 (29-35)S19 (417-422)AH13 (435-446)TIV16 (359-362)TIV2 (42-45)S15 (362-368)S1 (44-50)TI14 (313-316)S5 (142-150)AH11 (324-332)TII2 (50-53)TIV15 (278-281)S17 (386-391)TI3 (67-70)TIV3 (72-75)TI4 (74-77)TIV7 (119-122)S3 (88-89)TIV5 (90-93)TIV6 (91-94)AH3 (102-111)TI7 (150-153)3H3 (426-429)TIV8 (158-161)TI6 (123-126)TII3 (116-119)AH5 (154-158)TIV9 (182-185)AH4 (132-139)S14 (317-323)TIV10 (184-187)S6 (202-206)TI8 (165-168)AH6 (171-177)O1 (168-178)AH7 (191-198)TI10 (250-253)TVIII2 (200-203)TIV12 (251-254)TIV11 (218-221)3H2 (209-212)S7 (214-215)AH8 (225-232)TII4 (220-223)S9 (235-237)TI12 (289-292)AH9 (240-245)AH10 (299-311)S13 (287-288)TIV13 (260-263)S11 (268-269)TI11 (276-279)TIV14 (277-280)O2 (286-336)TI13 (293-296)AH12 (335-359)S18 (397-402)TI15 (378-381)S20 (431-434)TI5 (75-78)S2 (80-85)TVIII1 (97-100)TI9 (183-186)3H1 (179-181)S8 (223-224)S12 (274-275)S4 (96-97)S10 (255-258)S16 (375-377)TI16 (392-395)TII6 (423-426)Updating...
connected with : NaN
publication title Artificial evolution of an enzyme active site: structural studies of three highly active mutants of Escherichia coli alkaline phosphatase.
pubmed doi rcsb
molecule keywords Alkaline phosphatase
molecule tags Hydrolase
source organism Escherichia coli
total genus 142
structure length 444
sequence length 444
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2001-11-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1khnA00
5INHA 1AJBA 3WAVA 3B5QA 3UN3A 3WAYA 1EJJA 4MIVA 1ED9A 1FSUA 3DPCA 3UN5A 3IGYB 3TWZA 2GLQA 2XRGA 1KHJA 1AJAA 1HJKA 3BDHA 3LXQA 3WAXA 1EW2A 5EGHA 3MK0A 1KHKA 3BDFA 5DLTA 5L0KA 2W5QA 4FDJA 3UO0A 3IGZB 3WAWA 4GTYA 5DLVA 1B8JA 4GTWA 4ZG7A 3ED4A 1EW9A 1E33P 1Y6VA 1HDHA 4B56A 3NKNA 1ED8A 5IJQA 4CXUA 4LRFA 1EW8A 3NKMA 1ELYA 4KJDA 2G9YA 1ZEFA 4GTXA 4QAXA 2IUCB 4UORA 1E1ZP 5AJ9A 3UNYA 4UPIA 4NWJA 3UN2A 4UPKA 1N2LA 3MK2A 3CMRA 5TJ3A 4NWXA 5L0BA 4CXSA 3SZZA 2QZUA 4UOPA 3NKRA 1KH7A 3KD8A 5KXAA 4LRBA 4CYSA 3Q3QA 2GSNA 5K4PA 4ZGAA 4KJGA 4LR9A 3NVLA 1AJDA 3A52A 4UOOA 1ZEBA 5IJSA 3BDGB 2W8SA 5GOVA 4MY4A 3T02A 2GSOA 1SHNA 2ANHA 1KHNA 5HRTA 1EI6A 1EQJA 1KHLA 4ZG9A 1URBA 2D1GA 3DYCA 1URAA 2W5XA 3MK1A 1K7HA 4LREA 2GSUA 2RH6A 1AJCA 1O98A 4LR8A 4GTZA 4KM4A 1P49A 1ALIA 2W5SA 3NKPA 2IUCA 1ALHA 2W5WA 4LRAA 5DLWA 1ELXA 4UPLA 5LRNA 3TX0A 2W5RA 3T01A 2W8DA 1ANIA 5C66A 1ELZA 3E2DA 1KH9A 1E3CP 1ALKA 1AUKA 3M8ZA 3WBHA 5LRMA 5EGEA 4MHXA 4LR7A 3NKQA 2ZKTA 4LQYA 3IDDA 3M7VA 1E2SP 2X98A 4YR1A 4LRDA 4CYRA 5LQQA 4UPHA 1N2KA 4TN0A 3T00A 5GRRA 4CXKA 1Y7AA 3M8WA 1ANJA 3OT9A 2W5TA 2GA3A 4N7TA 3NKOA 3M8YA 3BDGA 2VQRA 3TG0A 1HQAA 1KH5A 1KH4A 1O99A 1SHQA 2IFYA 2XR9A 4FDIA 4LR2A 4ZG6A 1ALJA 4KAYA 5LIAA 1ZEDA 2W5VA 4KAVA 4LRCA 3SZYA 5L0EA
chains in the Genus database with same CATH superfamily
5INHA 1AJBA 3WAVA 3B5QA 3UN3A 3WAYA 1EJJA 4MIVA 1ED9A 1FSUA 3DPCA 3UN5A 3IGYB 3TWZA 2GLQA 2XRGA 1KHJA 1AJAA 1HJKA 3BDHA 3LXQA 3WAXA 1EW2A 5EGHA 3MK0A 1KHKA 3BDFA 5DLTA 5L0KA 2W5QA 4FDJA 3UO0A 3IGZB 3WAWA 4GTYA 5DLVA 1B8JA 4GTWA 4ZG7A 3ED4A 1EW9A 1E33P 1Y6VA 1HDHA 4B56A 3NKNA 1ED8A 5IJQA 4CXUA 4LRFA 1EW8A 3NKMA 1ELYA 4KJDA 2G9YA 1ZEFA 4GTXA 4QAXA 2IUCB 4UORA 1E1ZP 5AJ9A 3UNYA 4UPIA 4NWJA 3UN2A 4UPKA 1N2LA 3MK2A 3CMRA 5TJ3A 4NWXA 5L0BA 4CXSA 3SZZA 2QZUA 4UOPA 3NKRA 1KH7A 3KD8A 5KXAA 4LRBA 4CYSA 3Q3QA 2GSNA 5K4PA 4ZGAA 4KJGA 4LR9A 3NVLA 1AJDA 3A52A 4UOOA 1ZEBA 5IJSA 3BDGB 2W8SA 5GOVA 4MY4A 3T02A 2GSOA 1SHNA 2ANHA 1KHNA 5HRTA 1EI6A 1EQJA 1KHLA 4ZG9A 1URBA 2D1GA 3DYCA 1URAA 2W5XA 3MK1A 1K7HA 4LREA 2GSUA 2RH6A 1AJCA 1O98A 4LR8A 4GTZA 4KM4A 1P49A 1ALIA 2W5SA 3NKPA 2IUCA 1ALHA 2W5WA 4LRAA 5DLWA 1ELXA 4UPLA 5LRNA 3TX0A 2W5RA 3T01A 2W8DA 1ANIA 5C66A 1ELZA 3E2DA 1KH9A 1E3CP 1ALKA 1AUKA 3M8ZA 3WBHA 5LRMA 5EGEA 4MHXA 4LR7A 3NKQA 2ZKTA 4LQYA 3IDDA 3M7VA 1E2SP 2X98A 4YR1A 4LRDA 4CYRA 5LQQA 4UPHA 1N2KA 4TN0A 3T00A 5GRRA 4CXKA 1Y7AA 3M8WA 1ANJA 3OT9A 2W5TA 2GA3A 4N7TA 3NKOA 3M8YA 3BDGA 2VQRA 3TG0A 1HQAA 1KH5A 1KH4A 1O99A 1SHQA 2IFYA 2XR9A 4FDIA 4LR2A 4ZG6A 1ALJA 4KAYA 5LIAA 1ZEDA 2W5VA 4KAVA 4LRCA 3SZYA 5L0EA
chains in the Genus database with same CATH topology
5INHA 1AJBA 3WAVA 3B5QA 3UN3A 3WAYA 1EJJA 4MIVA 1ED9A 1FSUA 3DPCA 3UN5A 3IGYB 3TWZA 2GLQA 2XRGA 1KHJA 1AJAA 1HJKA 3BDHA 3LXQA 3WAXA 1EW2A 5EGHA 3MK0A 1KHKA 3BDFA 5DLTA 5L0KA 2W5QA 4FDJA 3UO0A 3IGZB 3WAWA 4GTYA 5DLVA 1B8JA 4GTWA 4ZG7A 3ED4A 1EW9A 1E33P 1Y6VA 1HDHA 4B56A 3NKNA 1ED8A 5IJQA 4CXUA 4LRFA 1EW8A 3NKMA 1ELYA 4KJDA 2G9YA 1ZEFA 4GTXA 4QAXA 2IUCB 4UORA 1E1ZP 5AJ9A 3UNYA 4UPIA 4NWJA 3UN2A 4UPKA 1N2LA 3MK2A 3CMRA 5TJ3A 4NWXA 5L0BA 4CXSA 3SZZA 2QZUA 4UOPA 3NKRA 1KH7A 3KD8A 5KXAA 4LRBA 4CYSA 3Q3QA 2GSNA 5K4PA 4ZGAA 4KJGA 4LR9A 3NVLA 1AJDA 3A52A 4UOOA 1ZEBA 5IJSA 3BDGB 2W8SA 5GOVA 4MY4A 3T02A 2GSOA 1SHNA 2ANHA 1KHNA 5HRTA 1EI6A 1EQJA 1KHLA 4ZG9A 1URBA 2D1GA 3DYCA 1URAA 2W5XA 3MK1A 1K7HA 4LREA 2GSUA 2RH6A 1AJCA 1O98A 4LR8A 4GTZA 4KM4A 1P49A 1ALIA 2W5SA 3NKPA 2IUCA 1ALHA 2W5WA 4LRAA 5DLWA 1ELXA 4UPLA 5LRNA 3TX0A 2W5RA 3T01A 2W8DA 1ANIA 5C66A 1ELZA 3E2DA 1KH9A 1E3CP 1ALKA 1AUKA 3M8ZA 3WBHA 5LRMA 5EGEA 4MHXA 4LR7A 3NKQA 2ZKTA 4LQYA 3IDDA 3M7VA 1E2SP 2X98A 4YR1A 4LRDA 4CYRA 5LQQA 4UPHA 1N2KA 4TN0A 3T00A 5GRRA 4CXKA 1Y7AA 3M8WA 1ANJA 3OT9A 2W5TA 2GA3A 4N7TA 3NKOA 3M8YA 3BDGA 2VQRA 3TG0A 1HQAA 1KH5A 1KH4A 1O99A 1SHQA 2IFYA 2XR9A 4FDIA 4LR2A 4ZG6A 1ALJA 4KAYA 5LIAA 1ZEDA 2W5VA 4KAVA 4LRCA 3SZYA 5L0EA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5INH A;  1AJB A;  3WAV A;  3B5Q A;  3UN3 A;  3WAY A;  1EJJ A;  4MIV A;  1ED9 A;  1FSU A;  3DPC A;  3UN5 A;  3IGY B;  3TWZ A;  2GLQ A;  2XRG A;  1KHJ A;  1AJA A;  1HJK A;  3BDH A;  3LXQ A;  3WAX A;  1EW2 A;  5EGH A;  3MK0 A;  1KHK A;  3BDF A;  5DLT A;  5L0K A;  2W5Q A;  4FDJ A;  3UO0 A;  3IGZ B;  3WAW A;  4GTY A;  5DLV A;  1B8J A;  4GTW A;  4ZG7 A;  3ED4 A;  1EW9 A;  1E33 P;  1Y6V A;  1HDH A;  4B56 A;  3NKN A;  1ED8 A;  5IJQ A;  4CXU A;  4LRF A;  1EW8 A;  3NKM A;  1ELY A;  4KJD A;  2G9Y A;  1ZEF A;  4GTX A;  4QAX A;  2IUC B;  4UOR A;  1E1Z P;  5AJ9 A;  3UNY A;  4UPI A;  4NWJ A;  3UN2 A;  4UPK A;  1N2L A;  3MK2 A;  3CMR A;  5TJ3 A;  4NWX A;  5L0B A;  4CXS A;  3SZZ A;  2QZU A;  4UOP A;  3NKR A;  1KH7 A;  3KD8 A;  5KXA A;  4LRB A;  4CYS A;  3Q3Q A;  2GSN A;  5K4P A;  4ZGA A;  4KJG A;  4LR9 A;  3NVL A;  1AJD A;  3A52 A;  4UOO A;  1ZEB A;  5IJS A;  3BDG B;  2W8S A;  5GOV A;  4MY4 A;  3T02 A;  2GSO A;  1SHN A;  2ANH A;  1KHN A;  5HRT A;  1EI6 A;  1EQJ A;  1KHL A;  4ZG9 A;  1URB A;  2D1G A;  3DYC A;  1URA A;  2W5X A;  3MK1 A;  1K7H A;  4LRE A;  2GSU A;  2RH6 A;  1AJC A;  1O98 A;  4LR8 A;  4GTZ A;  4KM4 A;  1P49 A;  1ALI A;  2W5S A;  3NKP A;  2IUC A;  1ALH A;  2W5W A;  4LRA A;  5DLW A;  1ELX A;  4UPL A;  5LRN A;  3TX0 A;  2W5R A;  3T01 A;  2W8D A;  1ANI A;  5C66 A;  1ELZ A;  3E2D A;  1KH9 A;  1E3C P;  1ALK A;  1AUK A;  3M8Z A;  3WBH A;  5LRM A;  5EGE A;  4MHX A;  4LR7 A;  3NKQ A;  2ZKT A;  4LQY A;  3IDD A;  3M7V A;  1E2S P;  2X98 A;  4YR1 A;  4LRD A;  4CYR A;  5LQQ A;  4UPH A;  1N2K A;  4TN0 A;  3T00 A;  5GRR A;  4CXK A;  1Y7A A;  3M8W A;  1ANJ A;  3OT9 A;  2W5T A;  2GA3 A;  4N7T A;  3NKO A;  3M8Y A;  3BDG A;  2VQR A;  3TG0 A;  1HQA A;  1KH5 A;  1KH4 A;  1O99 A;  1SHQ A;  2IFY A;  2XR9 A;  4FDI A;  4LR2 A;  4ZG6 A;  1ALJ A;  4KAY A;  5LIA A;  1ZED A;  2W5V A;  4KAV A;  4LRC A;  3SZY A;  5L0E A; 
#chains in the Genus database with same CATH topology
 5INH A;  1AJB A;  3WAV A;  3B5Q A;  3UN3 A;  3WAY A;  1EJJ A;  4MIV A;  1ED9 A;  1FSU A;  3DPC A;  3UN5 A;  3IGY B;  3TWZ A;  2GLQ A;  2XRG A;  1KHJ A;  1AJA A;  1HJK A;  3BDH A;  3LXQ A;  3WAX A;  1EW2 A;  5EGH A;  3MK0 A;  1KHK A;  3BDF A;  5DLT A;  5L0K A;  2W5Q A;  4FDJ A;  3UO0 A;  3IGZ B;  3WAW A;  4GTY A;  5DLV A;  1B8J A;  4GTW A;  4ZG7 A;  3ED4 A;  1EW9 A;  1E33 P;  1Y6V A;  1HDH A;  4B56 A;  3NKN A;  1ED8 A;  5IJQ A;  4CXU A;  4LRF A;  1EW8 A;  3NKM A;  1ELY A;  4KJD A;  2G9Y A;  1ZEF A;  4GTX A;  4QAX A;  2IUC B;  4UOR A;  1E1Z P;  5AJ9 A;  3UNY A;  4UPI A;  4NWJ A;  3UN2 A;  4UPK A;  1N2L A;  3MK2 A;  3CMR A;  5TJ3 A;  4NWX A;  5L0B A;  4CXS A;  3SZZ A;  2QZU A;  4UOP A;  3NKR A;  1KH7 A;  3KD8 A;  5KXA A;  4LRB A;  4CYS A;  3Q3Q A;  2GSN A;  5K4P A;  4ZGA A;  4KJG A;  4LR9 A;  3NVL A;  1AJD A;  3A52 A;  4UOO A;  1ZEB A;  5IJS A;  3BDG B;  2W8S A;  5GOV A;  4MY4 A;  3T02 A;  2GSO A;  1SHN A;  2ANH A;  1KHN A;  5HRT A;  1EI6 A;  1EQJ A;  1KHL A;  4ZG9 A;  1URB A;  2D1G A;  3DYC A;  1URA A;  2W5X A;  3MK1 A;  1K7H A;  4LRE A;  2GSU A;  2RH6 A;  1AJC A;  1O98 A;  4LR8 A;  4GTZ A;  4KM4 A;  1P49 A;  1ALI A;  2W5S A;  3NKP A;  2IUC A;  1ALH A;  2W5W A;  4LRA A;  5DLW A;  1ELX A;  4UPL A;  5LRN A;  3TX0 A;  2W5R A;  3T01 A;  2W8D A;  1ANI A;  5C66 A;  1ELZ A;  3E2D A;  1KH9 A;  1E3C P;  1ALK A;  1AUK A;  3M8Z A;  3WBH A;  5LRM A;  5EGE A;  4MHX A;  4LR7 A;  3NKQ A;  2ZKT A;  4LQY A;  3IDD A;  3M7V A;  1E2S P;  2X98 A;  4YR1 A;  4LRD A;  4CYR A;  5LQQ A;  4UPH A;  1N2K A;  4TN0 A;  3T00 A;  5GRR A;  4CXK A;  1Y7A A;  3M8W A;  1ANJ A;  3OT9 A;  2W5T A;  2GA3 A;  4N7T A;  3NKO A;  3M8Y A;  3BDG A;  2VQR A;  3TG0 A;  1HQA A;  1KH5 A;  1KH4 A;  1O99 A;  1SHQ A;  2IFY A;  2XR9 A;  4FDI A;  4LR2 A;  4ZG6 A;  1ALJ A;  4KAY A;  5LIA A;  1ZED A;  2W5V A;  4KAV A;  4LRC A;  3SZY A;  5L0E A; 
#chains in the Genus database with same CATH homology
 5INH A;  1AJB A;  3WAV A;  3B5Q A;  3UN3 A;  3WAY A;  1EJJ A;  4MIV A;  1ED9 A;  1FSU A;  3DPC A;  3UN5 A;  3IGY B;  3TWZ A;  2GLQ A;  2XRG A;  1KHJ A;  1AJA A;  1HJK A;  3BDH A;  3LXQ A;  3WAX A;  1EW2 A;  5EGH A;  3MK0 A;  1KHK A;  3BDF A;  5DLT A;  5L0K A;  2W5Q A;  4FDJ A;  3UO0 A;  3IGZ B;  3WAW A;  4GTY A;  5DLV A;  1B8J A;  4GTW A;  4ZG7 A;  3ED4 A;  1EW9 A;  1E33 P;  1Y6V A;  1HDH A;  4B56 A;  3NKN A;  1ED8 A;  5IJQ A;  4CXU A;  4LRF A;  1EW8 A;  3NKM A;  1ELY A;  4KJD A;  2G9Y A;  1ZEF A;  4GTX A;  4QAX A;  2IUC B;  4UOR A;  1E1Z P;  5AJ9 A;  3UNY A;  4UPI A;  4NWJ A;  3UN2 A;  4UPK A;  1N2L A;  3MK2 A;  3CMR A;  5TJ3 A;  4NWX A;  5L0B A;  4CXS A;  3SZZ A;  2QZU A;  4UOP A;  3NKR A;  1KH7 A;  3KD8 A;  5KXA A;  4LRB A;  4CYS A;  3Q3Q A;  2GSN A;  5K4P A;  4ZGA A;  4KJG A;  4LR9 A;  3NVL A;  1AJD A;  3A52 A;  4UOO A;  1ZEB A;  5IJS A;  3BDG B;  2W8S A;  5GOV A;  4MY4 A;  3T02 A;  2GSO A;  1SHN A;  2ANH A;  1KHN A;  5HRT A;  1EI6 A;  1EQJ A;  1KHL A;  4ZG9 A;  1URB A;  2D1G A;  3DYC A;  1URA A;  2W5X A;  3MK1 A;  1K7H A;  4LRE A;  2GSU A;  2RH6 A;  1AJC A;  1O98 A;  4LR8 A;  4GTZ A;  4KM4 A;  1P49 A;  1ALI A;  2W5S A;  3NKP A;  2IUC A;  1ALH A;  2W5W A;  4LRA A;  5DLW A;  1ELX A;  4UPL A;  5LRN A;  3TX0 A;  2W5R A;  3T01 A;  2W8D A;  1ANI A;  5C66 A;  1ELZ A;  3E2D A;  1KH9 A;  1E3C P;  1ALK A;  1AUK A;  3M8Z A;  3WBH A;  5LRM A;  5EGE A;  4MHX A;  4LR7 A;  3NKQ A;  2ZKT A;  4LQY A;  3IDD A;  3M7V A;  1E2S P;  2X98 A;  4YR1 A;  4LRD A;  4CYR A;  5LQQ A;  4UPH A;  1N2K A;  4TN0 A;  3T00 A;  5GRR A;  4CXK A;  1Y7A A;  3M8W A;  1ANJ A;  3OT9 A;  2W5T A;  2GA3 A;  4N7T A;  3NKO A;  3M8Y A;  3BDG A;  2VQR A;  3TG0 A;  1HQA A;  1KH5 A;  1KH4 A;  1O99 A;  1SHQ A;  2IFY A;  2XR9 A;  4FDI A;  4LR2 A;  4ZG6 A;  1ALJ A;  4KAY A;  5LIA A;  1ZED A;  2W5V A;  4KAV A;  4LRC A;  3SZY A;  5L0E A; 
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