1URAA

Alkaline phosphatase (d51zn)
Total Genus 160
50100150200250300350400020406080100120140160
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
160
Knots found
sequence length
446
structure length
446
Chain Sequence
MPVLENRAAQGDITAPGGARRLTGDQTAALRDSLSDKPAKNIILLIGNGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREQAQARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQDHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK
50100150200250300350400400300200100
050100150Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Alkaline phosphatase
source organism Escherichia coli
publication title Kinetic and structural consequences of replacing the aspartate bridge by asparagine in the catalytic metal triad of Escherichia coli alkaline phosphatase.
pubmed doi rcsb
molecule keywords ALKALINE PHOSPHATASE
total genus 160
structure length 446
sequence length 446
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 1996-02-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1uraA00
2W5SA 5LQQA 2G9YA 4TN0A 3NKRA 4NWJA 1ELXA 1ALHA 3MK2A 2IUCB 5INHA 5GRRA 4MY4A 1AJDA 1K7HA 1O98A 3MK0A 5DLWA 3WBHA 3WAVA 3T01A 4B56A 4CXSA 4MHXA 3UNYA 1ANJA 1EW2A 1KH7A 3NKOA 3IDDA 3NVLA 5AJ9A 4CXUA 4FDIA 4ZG6A 1Y7AA 5LIAA 2GSOA 3DPCA 4GTWA 4LR7A 4UPHA 4KJDA 4KM4A 1URAA 4UPLA 4MIVA 4LREA 1EI6A 4KAVA 3M8YA 4QAXA 5K4PA 4YR1A 1B8JA 1Y6VA 4LR9A 1ALIA 3MK1A 5L0BA 4ZG7A 5IJSA 4N7TA 1ED9A 5L0EA 4LRDA 4ZGAA 4UPKA 1AUKA 1AJAA 2X98A 4UOPA 3TWZA 4NWXA 5DLTA 2GLQA 4KJGA 3Q3QA 3TX0A 1ELZA 1N2KA 1HQAA 3CMRA 3A52A 3ED4A 2XR9A 2IFYA 1EJJA 4GTXA 3BDGA 3NKQA 1ALJA 1KHJA 1HDHA 1E1ZP 3T00A 4CYSA 5L0KA 3BDGB 1E3CP 3B5QA 3M8WA 2W8DA 1KH5A 1ZEBA 3WAYA 1URBA 1N2LA 3BDFA 1ELYA 4GTZA 4FDJA 1HJKA 2GSUA 3UN3A 4UORA 4KAYA 3LXQA 5C66A 2VQRA 4CYRA 4CXKA 1O99A 5IJQA 2W8SA 1E2SP 1KHLA 4LR2A 1KHNA 2RH6A 2W5TA 4UPIA 1EW8A 1EQJA 3WAWA 1ED8A 5DLVA 5LRNA 3IGYB 1ALKA 4LR8A 3OT9A 3UN2A 5HRTA 3BDHA 5EGHA 3UO0A 4LRAA 3TG0A 2GSNA 2W5XA 3NKPA 2D1GA 3WAXA 4UOOA 2W5WA 5KXAA 2GA3A 2XRGA 1KH9A 1ANIA 2W5VA 1ZEDA 2QZUA 1SHNA 1FSUA 4LRBA 1SHQA 4LRCA 2W5RA 1KH4A 1P49A 4LRFA 1E33P 1AJCA 1AJBA 2W5QA 3NKMA 3M7VA 4GTYA 3T02A 3IGZB 5LRMA 1ZEFA 3DYCA 2ANHA 3UN5A 3M8ZA 1KHKA 5GOVA 2ZKTA 4LQYA 5TJ3A 3E2DA 3SZYA 3SZZA 3NKNA 5EGEA 1EW9A 3KD8A 4ZG9A 2IUCA
chains in the Genus database with same CATH superfamily
2W5SA 5LQQA 2G9YA 4TN0A 3NKRA 4NWJA 1ELXA 1ALHA 3MK2A 2IUCB 5INHA 5GRRA 4MY4A 1AJDA 1K7HA 1O98A 3MK0A 5DLWA 3WBHA 3WAVA 3T01A 4B56A 4CXSA 4MHXA 3UNYA 1ANJA 1EW2A 1KH7A 3NKOA 3IDDA 3NVLA 5AJ9A 4CXUA 4FDIA 4ZG6A 1Y7AA 5LIAA 2GSOA 3DPCA 4GTWA 4LR7A 4UPHA 4KJDA 4KM4A 1URAA 4UPLA 4MIVA 4LREA 1EI6A 4KAVA 3M8YA 4QAXA 5K4PA 4YR1A 1B8JA 1Y6VA 4LR9A 1ALIA 3MK1A 5L0BA 4ZG7A 5IJSA 4N7TA 1ED9A 5L0EA 4LRDA 4ZGAA 4UPKA 1AUKA 1AJAA 2X98A 4UOPA 3TWZA 4NWXA 5DLTA 2GLQA 4KJGA 3Q3QA 3TX0A 1ELZA 1N2KA 1HQAA 3CMRA 3A52A 3ED4A 2XR9A 2IFYA 1EJJA 4GTXA 3BDGA 3NKQA 1ALJA 1KHJA 1HDHA 1E1ZP 3T00A 4CYSA 5L0KA 3BDGB 1E3CP 3B5QA 3M8WA 2W8DA 1KH5A 1ZEBA 3WAYA 1URBA 1N2LA 3BDFA 1ELYA 4GTZA 4FDJA 1HJKA 2GSUA 3UN3A 4UORA 4KAYA 3LXQA 5C66A 2VQRA 4CYRA 4CXKA 1O99A 5IJQA 2W8SA 1E2SP 1KHLA 4LR2A 1KHNA 2RH6A 2W5TA 4UPIA 1EW8A 1EQJA 3WAWA 1ED8A 5DLVA 5LRNA 3IGYB 1ALKA 4LR8A 3OT9A 3UN2A 5HRTA 3BDHA 5EGHA 3UO0A 4LRAA 3TG0A 2GSNA 2W5XA 3NKPA 2D1GA 3WAXA 4UOOA 2W5WA 5KXAA 2GA3A 2XRGA 1KH9A 1ANIA 2W5VA 1ZEDA 2QZUA 1SHNA 1FSUA 4LRBA 1SHQA 4LRCA 2W5RA 1KH4A 1P49A 4LRFA 1E33P 1AJCA 1AJBA 2W5QA 3NKMA 3M7VA 4GTYA 3T02A 3IGZB 5LRMA 1ZEFA 3DYCA 2ANHA 3UN5A 3M8ZA 1KHKA 5GOVA 2ZKTA 4LQYA 5TJ3A 3E2DA 3SZYA 3SZZA 3NKNA 5EGEA 1EW9A 3KD8A 4ZG9A 2IUCA
chains in the Genus database with same CATH topology
2W5SA 5LQQA 2G9YA 4TN0A 3NKRA 4NWJA 1ELXA 1ALHA 3MK2A 2IUCB 5INHA 5GRRA 4MY4A 1AJDA 1K7HA 1O98A 3MK0A 5DLWA 3WBHA 3WAVA 3T01A 4B56A 4CXSA 4MHXA 3UNYA 1ANJA 1EW2A 1KH7A 3NKOA 3IDDA 3NVLA 5AJ9A 4CXUA 4FDIA 4ZG6A 1Y7AA 5LIAA 2GSOA 3DPCA 4GTWA 4LR7A 4UPHA 4KJDA 4KM4A 1URAA 4UPLA 4MIVA 4LREA 1EI6A 4KAVA 3M8YA 4QAXA 5K4PA 4YR1A 1B8JA 1Y6VA 4LR9A 1ALIA 3MK1A 5L0BA 4ZG7A 5IJSA 4N7TA 1ED9A 5L0EA 4LRDA 4ZGAA 4UPKA 1AUKA 1AJAA 2X98A 4UOPA 3TWZA 4NWXA 5DLTA 2GLQA 4KJGA 3Q3QA 3TX0A 1ELZA 1N2KA 1HQAA 3CMRA 3A52A 3ED4A 2XR9A 2IFYA 1EJJA 4GTXA 3BDGA 3NKQA 1ALJA 1KHJA 1HDHA 1E1ZP 3T00A 4CYSA 5L0KA 3BDGB 1E3CP 3B5QA 3M8WA 2W8DA 1KH5A 1ZEBA 3WAYA 1URBA 1N2LA 3BDFA 1ELYA 4GTZA 4FDJA 1HJKA 2GSUA 3UN3A 4UORA 4KAYA 3LXQA 5C66A 2VQRA 4CYRA 4CXKA 1O99A 5IJQA 2W8SA 1E2SP 1KHLA 4LR2A 1KHNA 2RH6A 2W5TA 4UPIA 1EW8A 1EQJA 3WAWA 1ED8A 5DLVA 5LRNA 3IGYB 1ALKA 4LR8A 3OT9A 3UN2A 5HRTA 3BDHA 5EGHA 3UO0A 4LRAA 3TG0A 2GSNA 2W5XA 3NKPA 2D1GA 3WAXA 4UOOA 2W5WA 5KXAA 2GA3A 2XRGA 1KH9A 1ANIA 2W5VA 1ZEDA 2QZUA 1SHNA 1FSUA 4LRBA 1SHQA 4LRCA 2W5RA 1KH4A 1P49A 4LRFA 1E33P 1AJCA 1AJBA 2W5QA 3NKMA 3M7VA 4GTYA 3T02A 3IGZB 5LRMA 1ZEFA 3DYCA 2ANHA 3UN5A 3M8ZA 1KHKA 5GOVA 2ZKTA 4LQYA 5TJ3A 3E2DA 3SZYA 3SZZA 3NKNA 5EGEA 1EW9A 3KD8A 4ZG9A 2IUCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2W5S A;  5LQQ A;  2G9Y A;  4TN0 A;  3NKR A;  4NWJ A;  1ELX A;  1ALH A;  3MK2 A;  2IUC B;  5INH A;  5GRR A;  4MY4 A;  1AJD A;  1K7H A;  1O98 A;  3MK0 A;  5DLW A;  3WBH A;  3WAV A;  3T01 A;  4B56 A;  4CXS A;  4MHX A;  3UNY A;  1ANJ A;  1EW2 A;  1KH7 A;  3NKO A;  3IDD A;  3NVL A;  5AJ9 A;  4CXU A;  4FDI A;  4ZG6 A;  1Y7A A;  5LIA A;  2GSO A;  3DPC A;  4GTW A;  4LR7 A;  4UPH A;  4KJD A;  4KM4 A;  1URA A;  4UPL A;  4MIV A;  4LRE A;  1EI6 A;  4KAV A;  3M8Y A;  4QAX A;  5K4P A;  4YR1 A;  1B8J A;  1Y6V A;  4LR9 A;  1ALI A;  3MK1 A;  5L0B A;  4ZG7 A;  5IJS A;  4N7T A;  1ED9 A;  5L0E A;  4LRD A;  4ZGA A;  4UPK A;  1AUK A;  1AJA A;  2X98 A;  4UOP A;  3TWZ A;  4NWX A;  5DLT A;  2GLQ A;  4KJG A;  3Q3Q A;  3TX0 A;  1ELZ A;  1N2K A;  1HQA A;  3CMR A;  3A52 A;  3ED4 A;  2XR9 A;  2IFY A;  1EJJ A;  4GTX A;  3BDG A;  3NKQ A;  1ALJ A;  1KHJ A;  1HDH A;  1E1Z P;  3T00 A;  4CYS A;  5L0K A;  3BDG B;  1E3C P;  3B5Q A;  3M8W A;  2W8D A;  1KH5 A;  1ZEB A;  3WAY A;  1URB A;  1N2L A;  3BDF A;  1ELY A;  4GTZ A;  4FDJ A;  1HJK A;  2GSU A;  3UN3 A;  4UOR A;  4KAY A;  3LXQ A;  5C66 A;  2VQR A;  4CYR A;  4CXK A;  1O99 A;  5IJQ A;  2W8S A;  1E2S P;  1KHL A;  4LR2 A;  1KHN A;  2RH6 A;  2W5T A;  4UPI A;  1EW8 A;  1EQJ A;  3WAW A;  1ED8 A;  5DLV A;  5LRN A;  3IGY B;  1ALK A;  4LR8 A;  3OT9 A;  3UN2 A;  5HRT A;  3BDH A;  5EGH A;  3UO0 A;  4LRA A;  3TG0 A;  2GSN A;  2W5X A;  3NKP A;  2D1G A;  3WAX A;  4UOO A;  2W5W A;  5KXA A;  2GA3 A;  2XRG A;  1KH9 A;  1ANI A;  2W5V A;  1ZED A;  2QZU A;  1SHN A;  1FSU A;  4LRB A;  1SHQ A;  4LRC A;  2W5R A;  1KH4 A;  1P49 A;  4LRF A;  1E33 P;  1AJC A;  1AJB A;  2W5Q A;  3NKM A;  3M7V A;  4GTY A;  3T02 A;  3IGZ B;  5LRM A;  1ZEF A;  3DYC A;  2ANH A;  3UN5 A;  3M8Z A;  1KHK A;  5GOV A;  2ZKT A;  4LQY A;  5TJ3 A;  3E2D A;  3SZY A;  3SZZ A;  3NKN A;  5EGE A;  1EW9 A;  3KD8 A;  4ZG9 A;  2IUC A; 
#chains in the Genus database with same CATH topology
 2W5S A;  5LQQ A;  2G9Y A;  4TN0 A;  3NKR A;  4NWJ A;  1ELX A;  1ALH A;  3MK2 A;  2IUC B;  5INH A;  5GRR A;  4MY4 A;  1AJD A;  1K7H A;  1O98 A;  3MK0 A;  5DLW A;  3WBH A;  3WAV A;  3T01 A;  4B56 A;  4CXS A;  4MHX A;  3UNY A;  1ANJ A;  1EW2 A;  1KH7 A;  3NKO A;  3IDD A;  3NVL A;  5AJ9 A;  4CXU A;  4FDI A;  4ZG6 A;  1Y7A A;  5LIA A;  2GSO A;  3DPC A;  4GTW A;  4LR7 A;  4UPH A;  4KJD A;  4KM4 A;  1URA A;  4UPL A;  4MIV A;  4LRE A;  1EI6 A;  4KAV A;  3M8Y A;  4QAX A;  5K4P A;  4YR1 A;  1B8J A;  1Y6V A;  4LR9 A;  1ALI A;  3MK1 A;  5L0B A;  4ZG7 A;  5IJS A;  4N7T A;  1ED9 A;  5L0E A;  4LRD A;  4ZGA A;  4UPK A;  1AUK A;  1AJA A;  2X98 A;  4UOP A;  3TWZ A;  4NWX A;  5DLT A;  2GLQ A;  4KJG A;  3Q3Q A;  3TX0 A;  1ELZ A;  1N2K A;  1HQA A;  3CMR A;  3A52 A;  3ED4 A;  2XR9 A;  2IFY A;  1EJJ A;  4GTX A;  3BDG A;  3NKQ A;  1ALJ A;  1KHJ A;  1HDH A;  1E1Z P;  3T00 A;  4CYS A;  5L0K A;  3BDG B;  1E3C P;  3B5Q A;  3M8W A;  2W8D A;  1KH5 A;  1ZEB A;  3WAY A;  1URB A;  1N2L A;  3BDF A;  1ELY A;  4GTZ A;  4FDJ A;  1HJK A;  2GSU A;  3UN3 A;  4UOR A;  4KAY A;  3LXQ A;  5C66 A;  2VQR A;  4CYR A;  4CXK A;  1O99 A;  5IJQ A;  2W8S A;  1E2S P;  1KHL A;  4LR2 A;  1KHN A;  2RH6 A;  2W5T A;  4UPI A;  1EW8 A;  1EQJ A;  3WAW A;  1ED8 A;  5DLV A;  5LRN A;  3IGY B;  1ALK A;  4LR8 A;  3OT9 A;  3UN2 A;  5HRT A;  3BDH A;  5EGH A;  3UO0 A;  4LRA A;  3TG0 A;  2GSN A;  2W5X A;  3NKP A;  2D1G A;  3WAX A;  4UOO A;  2W5W A;  5KXA A;  2GA3 A;  2XRG A;  1KH9 A;  1ANI A;  2W5V A;  1ZED A;  2QZU A;  1SHN A;  1FSU A;  4LRB A;  1SHQ A;  4LRC A;  2W5R A;  1KH4 A;  1P49 A;  4LRF A;  1E33 P;  1AJC A;  1AJB A;  2W5Q A;  3NKM A;  3M7V A;  4GTY A;  3T02 A;  3IGZ B;  5LRM A;  1ZEF A;  3DYC A;  2ANH A;  3UN5 A;  3M8Z A;  1KHK A;  5GOV A;  2ZKT A;  4LQY A;  5TJ3 A;  3E2D A;  3SZY A;  3SZZ A;  3NKN A;  5EGE A;  1EW9 A;  3KD8 A;  4ZG9 A;  2IUC A; 
#chains in the Genus database with same CATH homology
 2W5S A;  5LQQ A;  2G9Y A;  4TN0 A;  3NKR A;  4NWJ A;  1ELX A;  1ALH A;  3MK2 A;  2IUC B;  5INH A;  5GRR A;  4MY4 A;  1AJD A;  1K7H A;  1O98 A;  3MK0 A;  5DLW A;  3WBH A;  3WAV A;  3T01 A;  4B56 A;  4CXS A;  4MHX A;  3UNY A;  1ANJ A;  1EW2 A;  1KH7 A;  3NKO A;  3IDD A;  3NVL A;  5AJ9 A;  4CXU A;  4FDI A;  4ZG6 A;  1Y7A A;  5LIA A;  2GSO A;  3DPC A;  4GTW A;  4LR7 A;  4UPH A;  4KJD A;  4KM4 A;  1URA A;  4UPL A;  4MIV A;  4LRE A;  1EI6 A;  4KAV A;  3M8Y A;  4QAX A;  5K4P A;  4YR1 A;  1B8J A;  1Y6V A;  4LR9 A;  1ALI A;  3MK1 A;  5L0B A;  4ZG7 A;  5IJS A;  4N7T A;  1ED9 A;  5L0E A;  4LRD A;  4ZGA A;  4UPK A;  1AUK A;  1AJA A;  2X98 A;  4UOP A;  3TWZ A;  4NWX A;  5DLT A;  2GLQ A;  4KJG A;  3Q3Q A;  3TX0 A;  1ELZ A;  1N2K A;  1HQA A;  3CMR A;  3A52 A;  3ED4 A;  2XR9 A;  2IFY A;  1EJJ A;  4GTX A;  3BDG A;  3NKQ A;  1ALJ A;  1KHJ A;  1HDH A;  1E1Z P;  3T00 A;  4CYS A;  5L0K A;  3BDG B;  1E3C P;  3B5Q A;  3M8W A;  2W8D A;  1KH5 A;  1ZEB A;  3WAY A;  1URB A;  1N2L A;  3BDF A;  1ELY A;  4GTZ A;  4FDJ A;  1HJK A;  2GSU A;  3UN3 A;  4UOR A;  4KAY A;  3LXQ A;  5C66 A;  2VQR A;  4CYR A;  4CXK A;  1O99 A;  5IJQ A;  2W8S A;  1E2S P;  1KHL A;  4LR2 A;  1KHN A;  2RH6 A;  2W5T A;  4UPI A;  1EW8 A;  1EQJ A;  3WAW A;  1ED8 A;  5DLV A;  5LRN A;  3IGY B;  1ALK A;  4LR8 A;  3OT9 A;  3UN2 A;  5HRT A;  3BDH A;  5EGH A;  3UO0 A;  4LRA A;  3TG0 A;  2GSN A;  2W5X A;  3NKP A;  2D1G A;  3WAX A;  4UOO A;  2W5W A;  5KXA A;  2GA3 A;  2XRG A;  1KH9 A;  1ANI A;  2W5V A;  1ZED A;  2QZU A;  1SHN A;  1FSU A;  4LRB A;  1SHQ A;  4LRC A;  2W5R A;  1KH4 A;  1P49 A;  4LRF A;  1E33 P;  1AJC A;  1AJB A;  2W5Q A;  3NKM A;  3M7V A;  4GTY A;  3T02 A;  3IGZ B;  5LRM A;  1ZEF A;  3DYC A;  2ANH A;  3UN5 A;  3M8Z A;  1KHK A;  5GOV A;  2ZKT A;  4LQY A;  5TJ3 A;  3E2D A;  3SZY A;  3SZZ A;  3NKN A;  5EGE A;  1EW9 A;  3KD8 A;  4ZG9 A;  2IUC A; 
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