1Y7AA

Structure of d153h/k328w e. coli alkaline phosphatase in presence of cobalt at 1.77 a resolution
Total Genus 162
50100150200250300350400020406080100120140160
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
162
Knots found
sequence length
449
structure length
449
Chain Sequence
TPEMPVLENRAAQGDITAPGGARRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQHATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREQAQARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDWQDHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK
50100150200250300350400400300200100
050100150Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Metal Specificity Is Correlated with Two Crucial Active Site Residues in Escherichia coli Alkaline Phosphatase(,).
pubmed doi rcsb
molecule keywords Alkaline phosphatase
molecule tags Hydrolase
source organism Escherichia coli
total genus 162
structure length 449
sequence length 449
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2004-12-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 1y7aA00
1AJCA 4NWJA 1ALKA 5K4PA 1KH5A 4CXKA 1O99A 2IFYA 5L0EA 3UN2A 4GTYA 3BDGA 2W5VA 4UPKA 4LR9A 4B56A 3MK0A 4GTWA 2G9YA 4FDJA 3MK2A 3KD8A 3NKMA 3MK1A 3TG0A 4CYRA 1ZEBA 4LREA 4FDIA 1ALJA 3IGZB 2GSUA 4CYSA 1K7HA 3NKNA 1HQAA 5GOVA 2ANHA 1B8JA 1E33P 4ZG6A 5DLVA 5AJ9A 1ANIA 3Q3QA 3T00A 5HRTA 1N2KA 4ZG9A 3E2DA 2VQRA 3TWZA 3NKRA 3BDHA 3UO0A 4ZG7A 2W8DA 1EW8A 4TN0A 5LRMA 2XRGA 1EQJA 4N7TA 1EJJA 4UOPA 3WAWA 3UN3A 4LRBA 1ELYA 4LR8A 3SZZA 5LIAA 5IJSA 3BDFA 4UPIA 3OT9A 5EGEA 2GSOA 1ANJA 2W5TA 3ED4A 4GTZA 3WBHA 4UOOA 3NKPA 2GA3A 1EW2A 4CXSA 1N2LA 1ELZA 1ELXA 2RH6A 1ALIA 5EGHA 4CXUA 2W5WA 3M7VA 2W5XA 4QAXA 3DPCA 1P49A 3CMRA 3SZYA 2D1GA 5GRRA 3B5QA 4UPLA 1KH9A 4KAYA 4LRAA 4KM4A 3NKOA 2W5RA 3TX0A 4UPHA 5INHA 5L0KA 5LRNA 3T02A 1URAA 4ZGAA 4KAVA 2GSNA 1E1ZP 1ZEDA 4MY4A 1E3CP 3UNYA 1SHNA 4LR7A 2XR9A 1URBA 4LRDA 1Y7AA 1KHKA 1ALHA 2W5QA 1KH7A 3M8YA 1O98A 3WAYA 4KJGA 5LQQA 1HJKA 3DYCA 1SHQA 5TJ3A 1AUKA 1Y6VA 1KHJA 5KXAA 3M8ZA 1AJAA 2QZUA 1HDHA 3NVLA 2X98A 3WAXA 1KHLA 1KH4A 1FSUA 2IUCB 5DLWA 1EW9A 3IDDA 3IGYB 5L0BA 2W8SA 1AJBA 1AJDA 4GTXA 4MHXA 4LRCA 4UORA 3T01A 1ZEFA 3M8WA 2GLQA 3A52A 3LXQA 4LQYA 2IUCA 1E2SP 2ZKTA 1KHNA 1EI6A 4LR2A 4KJDA 4MIVA 2W5SA 4LRFA 5C66A 1ED8A 4NWXA 5DLTA 5IJQA 4YR1A 1ED9A 3BDGB 3WAVA 3UN5A 3NKQA
chains in the Genus database with same CATH superfamily
1AJCA 4NWJA 1ALKA 5K4PA 1KH5A 4CXKA 1O99A 2IFYA 5L0EA 3UN2A 4GTYA 3BDGA 2W5VA 4UPKA 4LR9A 4B56A 3MK0A 4GTWA 2G9YA 4FDJA 3MK2A 3KD8A 3NKMA 3MK1A 3TG0A 4CYRA 1ZEBA 4LREA 4FDIA 1ALJA 3IGZB 2GSUA 4CYSA 1K7HA 3NKNA 1HQAA 5GOVA 2ANHA 1B8JA 1E33P 4ZG6A 5DLVA 5AJ9A 1ANIA 3Q3QA 3T00A 5HRTA 1N2KA 4ZG9A 3E2DA 2VQRA 3TWZA 3NKRA 3BDHA 3UO0A 4ZG7A 2W8DA 1EW8A 4TN0A 5LRMA 2XRGA 1EQJA 4N7TA 1EJJA 4UOPA 3WAWA 3UN3A 4LRBA 1ELYA 4LR8A 3SZZA 5LIAA 5IJSA 3BDFA 4UPIA 3OT9A 5EGEA 2GSOA 1ANJA 2W5TA 3ED4A 4GTZA 3WBHA 4UOOA 3NKPA 2GA3A 1EW2A 4CXSA 1N2LA 1ELZA 1ELXA 2RH6A 1ALIA 5EGHA 4CXUA 2W5WA 3M7VA 2W5XA 4QAXA 3DPCA 1P49A 3CMRA 3SZYA 2D1GA 5GRRA 3B5QA 4UPLA 1KH9A 4KAYA 4LRAA 4KM4A 3NKOA 2W5RA 3TX0A 4UPHA 5INHA 5L0KA 5LRNA 3T02A 1URAA 4ZGAA 4KAVA 2GSNA 1E1ZP 1ZEDA 4MY4A 1E3CP 3UNYA 1SHNA 4LR7A 2XR9A 1URBA 4LRDA 1Y7AA 1KHKA 1ALHA 2W5QA 1KH7A 3M8YA 1O98A 3WAYA 4KJGA 5LQQA 1HJKA 3DYCA 1SHQA 5TJ3A 1AUKA 1Y6VA 1KHJA 5KXAA 3M8ZA 1AJAA 2QZUA 1HDHA 3NVLA 2X98A 3WAXA 1KHLA 1KH4A 1FSUA 2IUCB 5DLWA 1EW9A 3IDDA 3IGYB 5L0BA 2W8SA 1AJBA 1AJDA 4GTXA 4MHXA 4LRCA 4UORA 3T01A 1ZEFA 3M8WA 2GLQA 3A52A 3LXQA 4LQYA 2IUCA 1E2SP 2ZKTA 1KHNA 1EI6A 4LR2A 4KJDA 4MIVA 2W5SA 4LRFA 5C66A 1ED8A 4NWXA 5DLTA 5IJQA 4YR1A 1ED9A 3BDGB 3WAVA 3UN5A 3NKQA
chains in the Genus database with same CATH topology
1AJCA 4NWJA 1ALKA 5K4PA 1KH5A 4CXKA 1O99A 2IFYA 5L0EA 3UN2A 4GTYA 3BDGA 2W5VA 4UPKA 4LR9A 4B56A 3MK0A 4GTWA 2G9YA 4FDJA 3MK2A 3KD8A 3NKMA 3MK1A 3TG0A 4CYRA 1ZEBA 4LREA 4FDIA 1ALJA 3IGZB 2GSUA 4CYSA 1K7HA 3NKNA 1HQAA 5GOVA 2ANHA 1B8JA 1E33P 4ZG6A 5DLVA 5AJ9A 1ANIA 3Q3QA 3T00A 5HRTA 1N2KA 4ZG9A 3E2DA 2VQRA 3TWZA 3NKRA 3BDHA 3UO0A 4ZG7A 2W8DA 1EW8A 4TN0A 5LRMA 2XRGA 1EQJA 4N7TA 1EJJA 4UOPA 3WAWA 3UN3A 4LRBA 1ELYA 4LR8A 3SZZA 5LIAA 5IJSA 3BDFA 4UPIA 3OT9A 5EGEA 2GSOA 1ANJA 2W5TA 3ED4A 4GTZA 3WBHA 4UOOA 3NKPA 2GA3A 1EW2A 4CXSA 1N2LA 1ELZA 1ELXA 2RH6A 1ALIA 5EGHA 4CXUA 2W5WA 3M7VA 2W5XA 4QAXA 3DPCA 1P49A 3CMRA 3SZYA 2D1GA 5GRRA 3B5QA 4UPLA 1KH9A 4KAYA 4LRAA 4KM4A 3NKOA 2W5RA 3TX0A 4UPHA 5INHA 5L0KA 5LRNA 3T02A 1URAA 4ZGAA 4KAVA 2GSNA 1E1ZP 1ZEDA 4MY4A 1E3CP 3UNYA 1SHNA 4LR7A 2XR9A 1URBA 4LRDA 1Y7AA 1KHKA 1ALHA 2W5QA 1KH7A 3M8YA 1O98A 3WAYA 4KJGA 5LQQA 1HJKA 3DYCA 1SHQA 5TJ3A 1AUKA 1Y6VA 1KHJA 5KXAA 3M8ZA 1AJAA 2QZUA 1HDHA 3NVLA 2X98A 3WAXA 1KHLA 1KH4A 1FSUA 2IUCB 5DLWA 1EW9A 3IDDA 3IGYB 5L0BA 2W8SA 1AJBA 1AJDA 4GTXA 4MHXA 4LRCA 4UORA 3T01A 1ZEFA 3M8WA 2GLQA 3A52A 3LXQA 4LQYA 2IUCA 1E2SP 2ZKTA 1KHNA 1EI6A 4LR2A 4KJDA 4MIVA 2W5SA 4LRFA 5C66A 1ED8A 4NWXA 5DLTA 5IJQA 4YR1A 1ED9A 3BDGB 3WAVA 3UN5A 3NKQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1AJC A;  4NWJ A;  1ALK A;  5K4P A;  1KH5 A;  4CXK A;  1O99 A;  2IFY A;  5L0E A;  3UN2 A;  4GTY A;  3BDG A;  2W5V A;  4UPK A;  4LR9 A;  4B56 A;  3MK0 A;  4GTW A;  2G9Y A;  4FDJ A;  3MK2 A;  3KD8 A;  3NKM A;  3MK1 A;  3TG0 A;  4CYR A;  1ZEB A;  4LRE A;  4FDI A;  1ALJ A;  3IGZ B;  2GSU A;  4CYS A;  1K7H A;  3NKN A;  1HQA A;  5GOV A;  2ANH A;  1B8J A;  1E33 P;  4ZG6 A;  5DLV A;  5AJ9 A;  1ANI A;  3Q3Q A;  3T00 A;  5HRT A;  1N2K A;  4ZG9 A;  3E2D A;  2VQR A;  3TWZ A;  3NKR A;  3BDH A;  3UO0 A;  4ZG7 A;  2W8D A;  1EW8 A;  4TN0 A;  5LRM A;  2XRG A;  1EQJ A;  4N7T A;  1EJJ A;  4UOP A;  3WAW A;  3UN3 A;  4LRB A;  1ELY A;  4LR8 A;  3SZZ A;  5LIA A;  5IJS A;  3BDF A;  4UPI A;  3OT9 A;  5EGE A;  2GSO A;  1ANJ A;  2W5T A;  3ED4 A;  4GTZ A;  3WBH A;  4UOO A;  3NKP A;  2GA3 A;  1EW2 A;  4CXS A;  1N2L A;  1ELZ A;  1ELX A;  2RH6 A;  1ALI A;  5EGH A;  4CXU A;  2W5W A;  3M7V A;  2W5X A;  4QAX A;  3DPC A;  1P49 A;  3CMR A;  3SZY A;  2D1G A;  5GRR A;  3B5Q A;  4UPL A;  1KH9 A;  4KAY A;  4LRA A;  4KM4 A;  3NKO A;  2W5R A;  3TX0 A;  4UPH A;  5INH A;  5L0K A;  5LRN A;  3T02 A;  1URA A;  4ZGA A;  4KAV A;  2GSN A;  1E1Z P;  1ZED A;  4MY4 A;  1E3C P;  3UNY A;  1SHN A;  4LR7 A;  2XR9 A;  1URB A;  4LRD A;  1Y7A A;  1KHK A;  1ALH A;  2W5Q A;  1KH7 A;  3M8Y A;  1O98 A;  3WAY A;  4KJG A;  5LQQ A;  1HJK A;  3DYC A;  1SHQ A;  5TJ3 A;  1AUK A;  1Y6V A;  1KHJ A;  5KXA A;  3M8Z A;  1AJA A;  2QZU A;  1HDH A;  3NVL A;  2X98 A;  3WAX A;  1KHL A;  1KH4 A;  1FSU A;  2IUC B;  5DLW A;  1EW9 A;  3IDD A;  3IGY B;  5L0B A;  2W8S A;  1AJB A;  1AJD A;  4GTX A;  4MHX A;  4LRC A;  4UOR A;  3T01 A;  1ZEF A;  3M8W A;  2GLQ A;  3A52 A;  3LXQ A;  4LQY A;  2IUC A;  1E2S P;  2ZKT A;  1KHN A;  1EI6 A;  4LR2 A;  4KJD A;  4MIV A;  2W5S A;  4LRF A;  5C66 A;  1ED8 A;  4NWX A;  5DLT A;  5IJQ A;  4YR1 A;  1ED9 A;  3BDG B;  3WAV A;  3UN5 A;  3NKQ A; 
#chains in the Genus database with same CATH topology
 1AJC A;  4NWJ A;  1ALK A;  5K4P A;  1KH5 A;  4CXK A;  1O99 A;  2IFY A;  5L0E A;  3UN2 A;  4GTY A;  3BDG A;  2W5V A;  4UPK A;  4LR9 A;  4B56 A;  3MK0 A;  4GTW A;  2G9Y A;  4FDJ A;  3MK2 A;  3KD8 A;  3NKM A;  3MK1 A;  3TG0 A;  4CYR A;  1ZEB A;  4LRE A;  4FDI A;  1ALJ A;  3IGZ B;  2GSU A;  4CYS A;  1K7H A;  3NKN A;  1HQA A;  5GOV A;  2ANH A;  1B8J A;  1E33 P;  4ZG6 A;  5DLV A;  5AJ9 A;  1ANI A;  3Q3Q A;  3T00 A;  5HRT A;  1N2K A;  4ZG9 A;  3E2D A;  2VQR A;  3TWZ A;  3NKR A;  3BDH A;  3UO0 A;  4ZG7 A;  2W8D A;  1EW8 A;  4TN0 A;  5LRM A;  2XRG A;  1EQJ A;  4N7T A;  1EJJ A;  4UOP A;  3WAW A;  3UN3 A;  4LRB A;  1ELY A;  4LR8 A;  3SZZ A;  5LIA A;  5IJS A;  3BDF A;  4UPI A;  3OT9 A;  5EGE A;  2GSO A;  1ANJ A;  2W5T A;  3ED4 A;  4GTZ A;  3WBH A;  4UOO A;  3NKP A;  2GA3 A;  1EW2 A;  4CXS A;  1N2L A;  1ELZ A;  1ELX A;  2RH6 A;  1ALI A;  5EGH A;  4CXU A;  2W5W A;  3M7V A;  2W5X A;  4QAX A;  3DPC A;  1P49 A;  3CMR A;  3SZY A;  2D1G A;  5GRR A;  3B5Q A;  4UPL A;  1KH9 A;  4KAY A;  4LRA A;  4KM4 A;  3NKO A;  2W5R A;  3TX0 A;  4UPH A;  5INH A;  5L0K A;  5LRN A;  3T02 A;  1URA A;  4ZGA A;  4KAV A;  2GSN A;  1E1Z P;  1ZED A;  4MY4 A;  1E3C P;  3UNY A;  1SHN A;  4LR7 A;  2XR9 A;  1URB A;  4LRD A;  1Y7A A;  1KHK A;  1ALH A;  2W5Q A;  1KH7 A;  3M8Y A;  1O98 A;  3WAY A;  4KJG A;  5LQQ A;  1HJK A;  3DYC A;  1SHQ A;  5TJ3 A;  1AUK A;  1Y6V A;  1KHJ A;  5KXA A;  3M8Z A;  1AJA A;  2QZU A;  1HDH A;  3NVL A;  2X98 A;  3WAX A;  1KHL A;  1KH4 A;  1FSU A;  2IUC B;  5DLW A;  1EW9 A;  3IDD A;  3IGY B;  5L0B A;  2W8S A;  1AJB A;  1AJD A;  4GTX A;  4MHX A;  4LRC A;  4UOR A;  3T01 A;  1ZEF A;  3M8W A;  2GLQ A;  3A52 A;  3LXQ A;  4LQY A;  2IUC A;  1E2S P;  2ZKT A;  1KHN A;  1EI6 A;  4LR2 A;  4KJD A;  4MIV A;  2W5S A;  4LRF A;  5C66 A;  1ED8 A;  4NWX A;  5DLT A;  5IJQ A;  4YR1 A;  1ED9 A;  3BDG B;  3WAV A;  3UN5 A;  3NKQ A; 
#chains in the Genus database with same CATH homology
 1AJC A;  4NWJ A;  1ALK A;  5K4P A;  1KH5 A;  4CXK A;  1O99 A;  2IFY A;  5L0E A;  3UN2 A;  4GTY A;  3BDG A;  2W5V A;  4UPK A;  4LR9 A;  4B56 A;  3MK0 A;  4GTW A;  2G9Y A;  4FDJ A;  3MK2 A;  3KD8 A;  3NKM A;  3MK1 A;  3TG0 A;  4CYR A;  1ZEB A;  4LRE A;  4FDI A;  1ALJ A;  3IGZ B;  2GSU A;  4CYS A;  1K7H A;  3NKN A;  1HQA A;  5GOV A;  2ANH A;  1B8J A;  1E33 P;  4ZG6 A;  5DLV A;  5AJ9 A;  1ANI A;  3Q3Q A;  3T00 A;  5HRT A;  1N2K A;  4ZG9 A;  3E2D A;  2VQR A;  3TWZ A;  3NKR A;  3BDH A;  3UO0 A;  4ZG7 A;  2W8D A;  1EW8 A;  4TN0 A;  5LRM A;  2XRG A;  1EQJ A;  4N7T A;  1EJJ A;  4UOP A;  3WAW A;  3UN3 A;  4LRB A;  1ELY A;  4LR8 A;  3SZZ A;  5LIA A;  5IJS A;  3BDF A;  4UPI A;  3OT9 A;  5EGE A;  2GSO A;  1ANJ A;  2W5T A;  3ED4 A;  4GTZ A;  3WBH A;  4UOO A;  3NKP A;  2GA3 A;  1EW2 A;  4CXS A;  1N2L A;  1ELZ A;  1ELX A;  2RH6 A;  1ALI A;  5EGH A;  4CXU A;  2W5W A;  3M7V A;  2W5X A;  4QAX A;  3DPC A;  1P49 A;  3CMR A;  3SZY A;  2D1G A;  5GRR A;  3B5Q A;  4UPL A;  1KH9 A;  4KAY A;  4LRA A;  4KM4 A;  3NKO A;  2W5R A;  3TX0 A;  4UPH A;  5INH A;  5L0K A;  5LRN A;  3T02 A;  1URA A;  4ZGA A;  4KAV A;  2GSN A;  1E1Z P;  1ZED A;  4MY4 A;  1E3C P;  3UNY A;  1SHN A;  4LR7 A;  2XR9 A;  1URB A;  4LRD A;  1Y7A A;  1KHK A;  1ALH A;  2W5Q A;  1KH7 A;  3M8Y A;  1O98 A;  3WAY A;  4KJG A;  5LQQ A;  1HJK A;  3DYC A;  1SHQ A;  5TJ3 A;  1AUK A;  1Y6V A;  1KHJ A;  5KXA A;  3M8Z A;  1AJA A;  2QZU A;  1HDH A;  3NVL A;  2X98 A;  3WAX A;  1KHL A;  1KH4 A;  1FSU A;  2IUC B;  5DLW A;  1EW9 A;  3IDD A;  3IGY B;  5L0B A;  2W8S A;  1AJB A;  1AJD A;  4GTX A;  4MHX A;  4LRC A;  4UOR A;  3T01 A;  1ZEF A;  3M8W A;  2GLQ A;  3A52 A;  3LXQ A;  4LQY A;  2IUC A;  1E2S P;  2ZKT A;  1KHN A;  1EI6 A;  4LR2 A;  4KJD A;  4MIV A;  2W5S A;  4LRF A;  5C66 A;  1ED8 A;  4NWX A;  5DLT A;  5IJQ A;  4YR1 A;  1ED9 A;  3BDG B;  3WAV A;  3UN5 A;  3NKQ A; 
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