4QAXA

Crystal structure of post-catalytic binary complex of phosphoglycerate mutase from staphylococcus aureus
Total Genus 185

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
185
Knots found
sequence length
503
structure length
503
Chain Sequence
KKPTALIILDGFANRESEHGNAVKLANKPNFDRYYNKYPTTQIEASGLDVGLPEGQMGNSEVGHMNIGAGRIVYQSLTRINKSIEDGDFFENDVLNNAIAHVNSHDSALHIFGLLSDGGVHSHYKHLFALLELAKKQGVEKVYVHAFLDGRDVDQKSALKYIEETEAKFNELGIGQFASVSGRYYAMDRDKRWEREEKAYNAIRNFDAPTYATAKEGVEASYNEGLTDEFVVPFIVENQNDGVNDGDAVIFYNFRPDRAAQLSEIFANRAFEGFKVEQVKDLFYATFTKYNDNIDAAIVFEKVDLNNTIGEIAQNNNLTQLRIAETEKYPHVTYFMSGGRNEEFKGERRRLIDSPKVATYDLKPEMSAYEVKDALLEELNKGDLDLIILNFANPDMVGHSGMLEPTIKAIEAVDECLGEVVDKILDMDGYAIITADHGNSDQVLTDDDQPMTTHTTNPVPVIVTKEGVTLRETGRLGDLAPTLLDLLNVEQPEDMTGESLIKH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
3H4 (328-330)S1 (6-11)TIV12 (440-443)S14 (432-437)TIV1 (11-14)EMPTYAH1 (24-27)AH16 (405-429)AH2 (31-39)S15 (461-465)3H1 (50-52)AH3 (62-71)AH4 (78-88)S13 (388-393)TIV10 (307-310)TI9 (494-497)TVIII2 (300-303)3H2 (90-93)AH5 (95-107)AH6 (126-139)TII4 (246-249)S8 (250-253)AH7 (159-174)TI1 (121-124)TIV2 (151-154)S5 (178-184)TVIII1 (156-159)TIV3 (152-155)S7 (236-238)TII3 (238-241)3H3 (230-232)AH9 (195-206)TIV7 (274-277)TIV6 (239-242)S9 (285-288)TIV9 (288-291)AH11 (261-268)TIV8 (281-284)TI5 (293-296)TI4 (270-273)O1 (296-298)AH14 (369-383)S11 (322-327)3H5 (337-339)TII5 (346-349)TI6 (365-368)AH15 (394-401)AH13 (331-335)TIV11 (339-342)S12 (349-354)TVIII3 (359-362)3H6 (362-364)TI7 (441-444)TII6 (467-470)TVIII5 (495-498)3H7 (478-480)TII1 (20-23)S4 (144-150)S3 (111-116)AH8 (185-189)TI2 (257-260)TIV5 (190-193)S10 (299-300)TI8 (447-450)TVIII4 (442-445)AH10 (216-226)S6 (212-213)AH17 (481-489)S2 (42-45)TII2 (55-58)AH12 (311-318)Updating...
connected with : NaN
molecule tags Isomerase
source organism Staphylococcus aureus subsp. aureus
publication title STRUCTURAL AND FUNCCTIONAL ANALYSIS of PHOSPHOGLYCERATE MUTASE from STAPHYLOCOCCUS AUREUS
rcsb
molecule keywords 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
total genus 185
structure length 503
sequence length 503
other databases KnotProt 2.0: S +31
ec nomenclature ec 5.4.2.12: Phosphoglycerate mutase (2,3-diphosphoglycerate-independent).
pdb deposition date 2014-05-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01676 Metalloenzyme Metalloenzyme superfamily
A PF06415 iPGM_N BPG-independent PGAM N-terminus (iPGM_N)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 4qaxA01
3.40.1450.10 Alpha Beta 3-Layer(aba) Sandwich 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain BPG-independent phosphoglycerate mutase, domain B 4qaxA02
1EJJA 2W8SA 2W5RA 1ANIA 1KH4A 2XR9A 5C66A 2W8DA 4KAYA 4N7TA 4LRBA 4ZG6A 1Y7AA 3NKOA 1URAA 2IFYA 2XRGA 4LRFA 2GLQA 3NKMA 3UNYA 3BDHA 1ELZA 3M8ZA 1N2KA 1O98A 3IGYB 5LRMA 1ZEDA 2GSOA 5HRTA 4CXKA 1N2LA 1EI6A 4QAXA 3MK2A 4CXSA 1SHQA 2W5WA 3NKPA 1AJBA 1EW8A 4CYRA 2ZKTA 4TN0A 4FDJA 4LR7A 1ED9A 3IGZB 3DPCA 5DLWA 5LQQA 4ZG9A 3SZZA 3NKQA 4MHXA 3KD8A 2GA3A 3NVLA 1O99A 3TG0A 3BDFA 3BDGB 5L0EA 1EW9A 3OT9A 1ALKA 1AUKA 3ED4A 4UPLA 4KJGA 3UN5A 1ZEBA 5AJ9A 5INHA 3WAYA 1HDHA 4KAVA 4GTYA 4UOPA 2VQRA 1ALJA 1URBA 4LRDA 4FDIA 5EGHA 3MK0A 3E2DA 2X98A 1ANJA 3Q3QA 3UN2A 5L0BA 1E3CP 3BDGA 4YR1A 5DLTA 5K4PA 2GSUA 1KH7A 3TWZA 4NWJA 1KHNA 5GRRA 5DLVA 3UN3A 1ELXA 2ANHA 1E1ZP 4GTZA 1ALIA 4ZGAA 1FSUA 1HJKA 1KHJA 5LIAA 3UO0A 1EW2A 5L0KA 3T00A 3WBHA 1ED8A 4NWXA 4B56A 2W5SA 3M8WA 3MK1A 3NKRA 4GTWA 5TJ3A 1SHNA 1ZEFA 3T01A 2D1GA 5LRNA 1EQJA 3NKNA 3M8YA 1P49A 4ZG7A 1ALHA 5GOVA 1HQAA 2QZUA 1AJCA 1E33P 2W5XA 4CYSA 4LRAA 1B8JA 5KXAA 1KH5A 1ELYA 1K7HA 3CMRA 4LREA 4UPKA 4KJDA 4UPHA 1E2SP 5EGEA 4UPIA 1KHKA 4MY4A 4LR8A 2IUCA 3A52A 1KHLA 4LQYA 4UOOA 5IJSA 2W5QA 3M7VA 4CXUA 3IDDA 3WAXA 3B5QA 1Y6VA 4LRCA 2W5TA 3DYCA 3WAVA 4KM4A 3TX0A 3SZYA 1AJAA 1AJDA 3LXQA 4LR9A 2GSNA 5IJQA 2G9YA 4MIVA 3WAWA 4GTXA 2RH6A 4UORA 2IUCB 4LR2A 3T02A 1KH9A 2W5VA
chains in the Genus database with same CATH superfamily
1EJJA 2W8SA 2W5RA 1ANIA 1KH4A 2XR9A 5C66A 2W8DA 4KAYA 4N7TA 4LRBA 4ZG6A 1Y7AA 3NKOA 1URAA 2IFYA 2XRGA 4LRFA 2GLQA 3NKMA 3UNYA 3BDHA 1ELZA 3M8ZA 1N2KA 1O98A 3IGYB 5LRMA 1ZEDA 2GSOA 5HRTA 4CXKA 1N2LA 1EI6A 4QAXA 3MK2A 4CXSA 1SHQA 2W5WA 3NKPA 1AJBA 1EW8A 4CYRA 2ZKTA 4TN0A 4FDJA 4LR7A 1ED9A 3IGZB 3DPCA 5DLWA 5LQQA 4ZG9A 3SZZA 3NKQA 4MHXA 3KD8A 2GA3A 3NVLA 1O99A 3TG0A 3BDFA 3BDGB 5L0EA 1EW9A 3OT9A 1ALKA 1AUKA 3ED4A 4UPLA 4KJGA 3UN5A 1ZEBA 5AJ9A 5INHA 3WAYA 1HDHA 4KAVA 4GTYA 4UOPA 2VQRA 1ALJA 1URBA 4LRDA 4FDIA 5EGHA 3MK0A 3E2DA 2X98A 1ANJA 3Q3QA 3UN2A 5L0BA 1E3CP 3BDGA 4YR1A 5DLTA 5K4PA 2GSUA 1KH7A 3TWZA 4NWJA 1KHNA 5GRRA 5DLVA 3UN3A 1ELXA 2ANHA 1E1ZP 4GTZA 1ALIA 4ZGAA 1FSUA 1HJKA 1KHJA 5LIAA 3UO0A 1EW2A 5L0KA 3T00A 3WBHA 1ED8A 4NWXA 4B56A 2W5SA 3M8WA 3MK1A 3NKRA 4GTWA 5TJ3A 1SHNA 1ZEFA 3T01A 2D1GA 5LRNA 1EQJA 3NKNA 3M8YA 1P49A 4ZG7A 1ALHA 5GOVA 1HQAA 2QZUA 1AJCA 1E33P 2W5XA 4CYSA 4LRAA 1B8JA 5KXAA 1KH5A 1ELYA 1K7HA 3CMRA 4LREA 4UPKA 4KJDA 4UPHA 1E2SP 5EGEA 4UPIA 1KHKA 4MY4A 4LR8A 2IUCA 3A52A 1KHLA 4LQYA 4UOOA 5IJSA 2W5QA 3M7VA 4CXUA 3IDDA 3WAXA 3B5QA 1Y6VA 4LRCA 2W5TA 3DYCA 3WAVA 4KM4A 3TX0A 3SZYA 1AJAA 1AJDA 3LXQA 4LR9A 2GSNA 5IJQA 2G9YA 4MIVA 3WAWA 4GTXA 2RH6A 4UORA 2IUCB 4LR2A 3T02A 1KH9A 2W5VA
chains in the Genus database with same CATH topology
1EJJA 2W8SA 2W5RA 1ANIA 1KH4A 2XR9A 5C66A 2W8DA 4KAYA 4N7TA 4LRBA 4ZG6A 1Y7AA 3NKOA 1URAA 2IFYA 2XRGA 4LRFA 2GLQA 3NKMA 3UNYA 3BDHA 1ELZA 3M8ZA 1N2KA 1O98A 3IGYB 5LRMA 1ZEDA 2GSOA 5HRTA 4CXKA 1N2LA 1EI6A 4QAXA 3MK2A 4CXSA 1SHQA 2W5WA 3NKPA 1AJBA 1EW8A 4CYRA 2ZKTA 4TN0A 4FDJA 4LR7A 1ED9A 3IGZB 3DPCA 5DLWA 5LQQA 4ZG9A 3SZZA 3NKQA 4MHXA 3KD8A 2GA3A 3NVLA 1O99A 3TG0A 3BDFA 3BDGB 5L0EA 1EW9A 3OT9A 1ALKA 1AUKA 3ED4A 4UPLA 4KJGA 3UN5A 1ZEBA 5AJ9A 5INHA 3WAYA 1HDHA 4KAVA 4GTYA 4UOPA 2VQRA 1ALJA 1URBA 4LRDA 4FDIA 5EGHA 3MK0A 3E2DA 2X98A 1ANJA 3Q3QA 3UN2A 5L0BA 1E3CP 3BDGA 4YR1A 5DLTA 5K4PA 2GSUA 1KH7A 3TWZA 4NWJA 1KHNA 5GRRA 5DLVA 3UN3A 1ELXA 2ANHA 1E1ZP 4GTZA 1ALIA 4ZGAA 1FSUA 1HJKA 1KHJA 5LIAA 3UO0A 1EW2A 5L0KA 3T00A 3WBHA 1ED8A 4NWXA 4B56A 2W5SA 3M8WA 3MK1A 3NKRA 4GTWA 5TJ3A 1SHNA 1ZEFA 3T01A 2D1GA 5LRNA 1EQJA 3NKNA 3M8YA 1P49A 4ZG7A 1ALHA 5GOVA 1HQAA 2QZUA 1AJCA 1E33P 2W5XA 4CYSA 4LRAA 1B8JA 5KXAA 1KH5A 1ELYA 1K7HA 3CMRA 4LREA 4UPKA 4KJDA 4UPHA 1E2SP 5EGEA 4UPIA 1KHKA 4MY4A 4LR8A 2IUCA 3A52A 1KHLA 4LQYA 4UOOA 5IJSA 2W5QA 3M7VA 4CXUA 3IDDA 3WAXA 3B5QA 1Y6VA 4LRCA 2W5TA 3DYCA 3WAVA 4KM4A 3TX0A 3SZYA 1AJAA 1AJDA 3LXQA 4LR9A 2GSNA 5IJQA 2G9YA 4MIVA 3WAWA 4GTXA 2RH6A 4UORA 2IUCB 4LR2A 3T02A 1KH9A 2W5VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EJJ A;  2W8S A;  2W5R A;  1ANI A;  1KH4 A;  2XR9 A;  5C66 A;  2W8D A;  4KAY A;  4N7T A;  4LRB A;  4ZG6 A;  1Y7A A;  3NKO A;  1URA A;  2IFY A;  2XRG A;  4LRF A;  2GLQ A;  3NKM A;  3UNY A;  3BDH A;  1ELZ A;  3M8Z A;  1N2K A;  1O98 A;  3IGY B;  5LRM A;  1ZED A;  2GSO A;  5HRT A;  4CXK A;  1N2L A;  1EI6 A;  4QAX A;  3MK2 A;  4CXS A;  1SHQ A;  2W5W A;  3NKP A;  1AJB A;  1EW8 A;  4CYR A;  2ZKT A;  4TN0 A;  4FDJ A;  4LR7 A;  1ED9 A;  3IGZ B;  3DPC A;  5DLW A;  5LQQ A;  4ZG9 A;  3SZZ A;  3NKQ A;  4MHX A;  3KD8 A;  2GA3 A;  3NVL A;  1O99 A;  3TG0 A;  3BDF A;  3BDG B;  5L0E A;  1EW9 A;  3OT9 A;  1ALK A;  1AUK A;  3ED4 A;  4UPL A;  4KJG A;  3UN5 A;  1ZEB A;  5AJ9 A;  5INH A;  3WAY A;  1HDH A;  4KAV A;  4GTY A;  4UOP A;  2VQR A;  1ALJ A;  1URB A;  4LRD A;  4FDI A;  5EGH A;  3MK0 A;  3E2D A;  2X98 A;  1ANJ A;  3Q3Q A;  3UN2 A;  5L0B A;  1E3C P;  3BDG A;  4YR1 A;  5DLT A;  5K4P A;  2GSU A;  1KH7 A;  3TWZ A;  4NWJ A;  1KHN A;  5GRR A;  5DLV A;  3UN3 A;  1ELX A;  2ANH A;  1E1Z P;  4GTZ A;  1ALI A;  4ZGA A;  1FSU A;  1HJK A;  1KHJ A;  5LIA A;  3UO0 A;  1EW2 A;  5L0K A;  3T00 A;  3WBH A;  1ED8 A;  4NWX A;  4B56 A;  2W5S A;  3M8W A;  3MK1 A;  3NKR A;  4GTW A;  5TJ3 A;  1SHN A;  1ZEF A;  3T01 A;  2D1G A;  5LRN A;  1EQJ A;  3NKN A;  3M8Y A;  1P49 A;  4ZG7 A;  1ALH A;  5GOV A;  1HQA A;  2QZU A;  1AJC A;  1E33 P;  2W5X A;  4CYS A;  4LRA A;  1B8J A;  5KXA A;  1KH5 A;  1ELY A;  1K7H A;  3CMR A;  4LRE A;  4UPK A;  4KJD A;  4UPH A;  1E2S P;  5EGE A;  4UPI A;  1KHK A;  4MY4 A;  4LR8 A;  2IUC A;  3A52 A;  1KHL A;  4LQY A;  4UOO A;  5IJS A;  2W5Q A;  3M7V A;  4CXU A;  3IDD A;  3WAX A;  3B5Q A;  1Y6V A;  4LRC A;  2W5T A;  3DYC A;  3WAV A;  4KM4 A;  3TX0 A;  3SZY A;  1AJA A;  1AJD A;  3LXQ A;  4LR9 A;  2GSN A;  5IJQ A;  2G9Y A;  4MIV A;  3WAW A;  4GTX A;  2RH6 A;  4UOR A;  2IUC B;  4LR2 A;  3T02 A;  1KH9 A;  2W5V A; 
#chains in the Genus database with same CATH topology
 1EJJ A;  2W8S A;  2W5R A;  1ANI A;  1KH4 A;  2XR9 A;  5C66 A;  2W8D A;  4KAY A;  4N7T A;  4LRB A;  4ZG6 A;  1Y7A A;  3NKO A;  1URA A;  2IFY A;  2XRG A;  4LRF A;  2GLQ A;  3NKM A;  3UNY A;  3BDH A;  1ELZ A;  3M8Z A;  1N2K A;  1O98 A;  3IGY B;  5LRM A;  1ZED A;  2GSO A;  5HRT A;  4CXK A;  1N2L A;  1EI6 A;  4QAX A;  3MK2 A;  4CXS A;  1SHQ A;  2W5W A;  3NKP A;  1AJB A;  1EW8 A;  4CYR A;  2ZKT A;  4TN0 A;  4FDJ A;  4LR7 A;  1ED9 A;  3IGZ B;  3DPC A;  5DLW A;  5LQQ A;  4ZG9 A;  3SZZ A;  3NKQ A;  4MHX A;  3KD8 A;  2GA3 A;  3NVL A;  1O99 A;  3TG0 A;  3BDF A;  3BDG B;  5L0E A;  1EW9 A;  3OT9 A;  1ALK A;  1AUK A;  3ED4 A;  4UPL A;  4KJG A;  3UN5 A;  1ZEB A;  5AJ9 A;  5INH A;  3WAY A;  1HDH A;  4KAV A;  4GTY A;  4UOP A;  2VQR A;  1ALJ A;  1URB A;  4LRD A;  4FDI A;  5EGH A;  3MK0 A;  3E2D A;  2X98 A;  1ANJ A;  3Q3Q A;  3UN2 A;  5L0B A;  1E3C P;  3BDG A;  4YR1 A;  5DLT A;  5K4P A;  2GSU A;  1KH7 A;  3TWZ A;  4NWJ A;  1KHN A;  5GRR A;  5DLV A;  3UN3 A;  1ELX A;  2ANH A;  1E1Z P;  4GTZ A;  1ALI A;  4ZGA A;  1FSU A;  1HJK A;  1KHJ A;  5LIA A;  3UO0 A;  1EW2 A;  5L0K A;  3T00 A;  3WBH A;  1ED8 A;  4NWX A;  4B56 A;  2W5S A;  3M8W A;  3MK1 A;  3NKR A;  4GTW A;  5TJ3 A;  1SHN A;  1ZEF A;  3T01 A;  2D1G A;  5LRN A;  1EQJ A;  3NKN A;  3M8Y A;  1P49 A;  4ZG7 A;  1ALH A;  5GOV A;  1HQA A;  2QZU A;  1AJC A;  1E33 P;  2W5X A;  4CYS A;  4LRA A;  1B8J A;  5KXA A;  1KH5 A;  1ELY A;  1K7H A;  3CMR A;  4LRE A;  4UPK A;  4KJD A;  4UPH A;  1E2S P;  5EGE A;  4UPI A;  1KHK A;  4MY4 A;  4LR8 A;  2IUC A;  3A52 A;  1KHL A;  4LQY A;  4UOO A;  5IJS A;  2W5Q A;  3M7V A;  4CXU A;  3IDD A;  3WAX A;  3B5Q A;  1Y6V A;  4LRC A;  2W5T A;  3DYC A;  3WAV A;  4KM4 A;  3TX0 A;  3SZY A;  1AJA A;  1AJD A;  3LXQ A;  4LR9 A;  2GSN A;  5IJQ A;  2G9Y A;  4MIV A;  3WAW A;  4GTX A;  2RH6 A;  4UOR A;  2IUC B;  4LR2 A;  3T02 A;  1KH9 A;  2W5V A; 
#chains in the Genus database with same CATH homology
 1EJJ A;  2W8S A;  2W5R A;  1ANI A;  1KH4 A;  2XR9 A;  5C66 A;  2W8D A;  4KAY A;  4N7T A;  4LRB A;  4ZG6 A;  1Y7A A;  3NKO A;  1URA A;  2IFY A;  2XRG A;  4LRF A;  2GLQ A;  3NKM A;  3UNY A;  3BDH A;  1ELZ A;  3M8Z A;  1N2K A;  1O98 A;  3IGY B;  5LRM A;  1ZED A;  2GSO A;  5HRT A;  4CXK A;  1N2L A;  1EI6 A;  4QAX A;  3MK2 A;  4CXS A;  1SHQ A;  2W5W A;  3NKP A;  1AJB A;  1EW8 A;  4CYR A;  2ZKT A;  4TN0 A;  4FDJ A;  4LR7 A;  1ED9 A;  3IGZ B;  3DPC A;  5DLW A;  5LQQ A;  4ZG9 A;  3SZZ A;  3NKQ A;  4MHX A;  3KD8 A;  2GA3 A;  3NVL A;  1O99 A;  3TG0 A;  3BDF A;  3BDG B;  5L0E A;  1EW9 A;  3OT9 A;  1ALK A;  1AUK A;  3ED4 A;  4UPL A;  4KJG A;  3UN5 A;  1ZEB A;  5AJ9 A;  5INH A;  3WAY A;  1HDH A;  4KAV A;  4GTY A;  4UOP A;  2VQR A;  1ALJ A;  1URB A;  4LRD A;  4FDI A;  5EGH A;  3MK0 A;  3E2D A;  2X98 A;  1ANJ A;  3Q3Q A;  3UN2 A;  5L0B A;  1E3C P;  3BDG A;  4YR1 A;  5DLT A;  5K4P A;  2GSU A;  1KH7 A;  3TWZ A;  4NWJ A;  1KHN A;  5GRR A;  5DLV A;  3UN3 A;  1ELX A;  2ANH A;  1E1Z P;  4GTZ A;  1ALI A;  4ZGA A;  1FSU A;  1HJK A;  1KHJ A;  5LIA A;  3UO0 A;  1EW2 A;  5L0K A;  3T00 A;  3WBH A;  1ED8 A;  4NWX A;  4B56 A;  2W5S A;  3M8W A;  3MK1 A;  3NKR A;  4GTW A;  5TJ3 A;  1SHN A;  1ZEF A;  3T01 A;  2D1G A;  5LRN A;  1EQJ A;  3NKN A;  3M8Y A;  1P49 A;  4ZG7 A;  1ALH A;  5GOV A;  1HQA A;  2QZU A;  1AJC A;  1E33 P;  2W5X A;  4CYS A;  4LRA A;  1B8J A;  5KXA A;  1KH5 A;  1ELY A;  1K7H A;  3CMR A;  4LRE A;  4UPK A;  4KJD A;  4UPH A;  1E2S P;  5EGE A;  4UPI A;  1KHK A;  4MY4 A;  4LR8 A;  2IUC A;  3A52 A;  1KHL A;  4LQY A;  4UOO A;  5IJS A;  2W5Q A;  3M7V A;  4CXU A;  3IDD A;  3WAX A;  3B5Q A;  1Y6V A;  4LRC A;  2W5T A;  3DYC A;  3WAV A;  4KM4 A;  3TX0 A;  3SZY A;  1AJA A;  1AJD A;  3LXQ A;  4LR9 A;  2GSN A;  5IJQ A;  2G9Y A;  4MIV A;  3WAW A;  4GTX A;  2RH6 A;  4UOR A;  2IUC B;  4LR2 A;  3T02 A;  1KH9 A;  2W5V A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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