1S04 | Genus

Total Genus 17

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	17
sequence length	110
structure length	110
Chain Sequence	MEWEMGLQEEFLELIKLRKKKIEGRLYDEKRRQIKPGDVISFEGGKLKVRVKAIRVYNSFREMLEKEGLENVLPGVKSIEEGIQVYRRFYDEEKEKKYGVVAIEIEPLEY

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural genomics, unknown function
source organism	Pyrococcus furiosus
publication title	Solution Structure Of The Hypothetical Protein PF0455 From Pyrococcus furiosus: Northeast Structural Genomics Consortium Target PfR13 rcsb
molecule keywords	hypothetical protein PF0455
total genus	17
structure length	110
sequence length	110
ec nomenclature
pdb deposition date	2003-12-29

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF04266	ASCH	ASCH domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.130.30	Mainly Beta	Roll	Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4	Hypothetical protein.	1s04A00

2KKUA 1WK2A 2Z0TA 1XNEA 1TE7A 2DP9A 2E5OA 1S04A 3IUWA
chains in the Genus database with same CATH superfamily

3LDFA 3M6XA 2AUSA 4DMGA 2FRXA 1Q7HA 1WXWA 3ZV0C 3LWQA 3LWRA 2J5TA 3LJCA 3LWVA 2RFKA 3M6UA 3U28A 1SQWA 2CX0A 2ANEA 2CWWA 3MQKA 1ZBOA 2AS0A 1UOYA 4Q1TA 1WK2A 3LWOA 3D79A 1ZS7A 2B78A 1K8WA 3HJYA 3VSEA 2EY4A 2Q07A 4TZ4C 1ZE2A 2E5OA 3M4XA 1SGVA 3IUWA 3LWPA 2J5VA 1IQ8A 3HAXA 2Z0TA 1R3FA 4CI1B 1WXXA 1IT8A 1TE7A 2AB4A 1IT7A 1ZE1A 1J2BA 2HVYA 3HJWA 2CX1A 2KKUA 2P38A 3M6VA 4CI3B 1R3EA 4CI2B 2APOA 3C0KA 3UAIA 1XNEA 1ZL3A 3M65A 1T5YA 2DP9A 1S04A 3M6WA
chains in the Genus database with same CATH topology

2KKUA 1WK2A 2Z0TA 4C26A 1WHZA 1XNEA 1TE7A 4P78C 2DP9A 2E5OA 1S04A 3IUWA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2KKU A;  1WK2 A;  2Z0T A;  1XNE A;  1TE7 A;  2DP9 A;  2E5O A;  1S04 A;  3IUW A; 
#chains in the Genus database with same CATH topology
 3LDF A;  3M6X A;  2AUS A;  4DMG A;  2FRX A;  1Q7H A;  1WXW A;  3ZV0 C;  3LWQ A;  3LWR A;  2J5T A;  3LJC A;  3LWV A;  2RFK A;  3M6U A;  3U28 A;  1SQW A;  2CX0 A;  2ANE A;  2CWW A;  3MQK A;  1ZBO A;  2AS0 A;  1UOY A;  4Q1T A;  1WK2 A;  3LWO A;  3D79 A;  1ZS7 A;  2B78 A;  1K8W A;  3HJY A;  3VSE A;  2EY4 A;  2Q07 A;  4TZ4 C;  1ZE2 A;  2E5O A;  3M4X A;  1SGV A;  3IUW A;  3LWP A;  2J5V A;  1IQ8 A;  3HAX A;  2Z0T A;  1R3F A;  4CI1 B;  1WXX A;  1IT8 A;  1TE7 A;  2AB4 A;  1IT7 A;  1ZE1 A;  1J2B A;  2HVY A;  3HJW A;  2CX1 A;  2KKU A;  2P38 A;  3M6V A;  4CI3 B;  1R3E A;  4CI2 B;  2APO A;  3C0K A;  3UAI A;  1XNE A;  1ZL3 A;  3M65 A;  1T5Y A;  2DP9 A;  1S04 A;  3M6W A; 
#chains in the Genus database with same CATH homology
 2KKU A;  1WK2 A;  2Z0T A;  4C26 A;  1WHZ A;  1XNE A;  1TE7 A;  4P78 C;  2DP9 A;  2E5O A;  1S04 A;  3IUW A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1S04A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations