1XNE | Genus

Total Genus 16

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	16
sequence length	113
structure length	113
Chain Sequence	MKVYRLYLKDEYLEMVKSGKKRIEVRVAYPQLKDIKRGDKIIFNDLIPAEVVEVKKYETFRQVLREEPIDKIFPDKPSFEKALKRFHNMYPKWKEYRYGVLAIKFRVLGRDKE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 113 atoms

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113 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural genomics, unknown function
source organism	Pyrococcus furiosus
publication title	NMR data collection and analysis protocol for high-throughput protein structure determination. pubmed doi rcsb
molecule keywords	hypothetical protein PF0469
total genus	16
structure length	113
sequence length	113
ec nomenclature
pdb deposition date	2004-10-04

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF04266	ASCH	ASCH domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.130.30	Mainly Beta	Roll	Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4	Hypothetical protein.	1xneA00

1S04A 1TE7A 2Z0TA 3IUWA 2DP9A 1WK2A 1XNEA 2E5OA 2KKUA
chains in the Genus database with same CATH superfamily

3HJYA 3LDFA 1R3EA 2HVYA 3D79A 1UOYA 1WXXA 1ZS7A 4DMGA 3M6VA 2AUSA 3MQKA 3ZV0C 2B78A 2RFKA 1XNEA 2E5OA 2KKUA 1R3FA 1IT7A 4TZ4C 3LJCA 3HAXA 2Z0TA 2FRXA 2DP9A 1WXWA 2AB4A 1IT8A 1J2BA 2CX1A 3M65A 2APOA 1ZBOA 3M6XA 3U28A 3LWPA 3HJWA 1T5YA 1ZE2A 3VSEA 3M4XA 3LWOA 1WK2A 2J5TA 4CI2B 3LWVA 2Q07A 2CWWA 2J5VA 1S04A 2CX0A 1K8WA 4CI1B 1TE7A 1ZL3A 2ANEA 1ZE1A 2EY4A 2P38A 3IUWA 1Q7HA 3M6WA 4CI3B 1SQWA 1SGVA 2AS0A 3UAIA 1IQ8A 4Q1TA 3LWRA 3LWQA 3M6UA 3C0KA
chains in the Genus database with same CATH topology

1S04A 4P78C 4C26A 1TE7A 2Z0TA 3IUWA 2DP9A 1WHZA 1WK2A 1XNEA 2E5OA 2KKUA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1S04 A;  1TE7 A;  2Z0T A;  3IUW A;  2DP9 A;  1WK2 A;  1XNE A;  2E5O A;  2KKU A; 
#chains in the Genus database with same CATH topology
 3HJY A;  3LDF A;  1R3E A;  2HVY A;  3D79 A;  1UOY A;  1WXX A;  1ZS7 A;  4DMG A;  3M6V A;  2AUS A;  3MQK A;  3ZV0 C;  2B78 A;  2RFK A;  1XNE A;  2E5O A;  2KKU A;  1R3F A;  1IT7 A;  4TZ4 C;  3LJC A;  3HAX A;  2Z0T A;  2FRX A;  2DP9 A;  1WXW A;  2AB4 A;  1IT8 A;  1J2B A;  2CX1 A;  3M65 A;  2APO A;  1ZBO A;  3M6X A;  3U28 A;  3LWP A;  3HJW A;  1T5Y A;  1ZE2 A;  3VSE A;  3M4X A;  3LWO A;  1WK2 A;  2J5T A;  4CI2 B;  3LWV A;  2Q07 A;  2CWW A;  2J5V A;  1S04 A;  2CX0 A;  1K8W A;  4CI1 B;  1TE7 A;  1ZL3 A;  2ANE A;  1ZE1 A;  2EY4 A;  2P38 A;  3IUW A;  1Q7H A;  3M6W A;  4CI3 B;  1SQW A;  1SGV A;  2AS0 A;  3UAI A;  1IQ8 A;  4Q1T A;  3LWR A;  3LWQ A;  3M6U A;  3C0K A; 
#chains in the Genus database with same CATH homology
 1S04 A;  4P78 C;  4C26 A;  1TE7 A;  2Z0T A;  3IUW A;  2DP9 A;  1WHZ A;  1WK2 A;  1XNE A;  2E5O A;  2KKU A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1XNEA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations