2DP9 | Genus

Total Genus 30

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	30
sequence length	124
structure length	124
Chain Sequence	MDYMERPKLGLIVREPYASLIVDGRKVWEIRRRKTRHRGPLGIVSGGRLIGQADLVGVEGPFSVEELLAHQEKHLAEEAFLRAYAKDEPLYAWVLENAFRYEKPLHVPRRPGRVMFVDLSEVRW

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 124 atoms

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124 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural genomics, unknown function
source organism	Thermus thermophilus
publication title	Crystal Structure of Conserved Hypothetical Protein TTHA0113 from Thermus thermophilus HB8 rcsb
molecule keywords	Hypothetical protein TTHA0113
total genus	30
structure length	124
sequence length	124
ec nomenclature
pdb deposition date	2006-05-08

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF04266	ASCH	ASCH domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.130.30	Mainly Beta	Roll	Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4	Hypothetical protein.	2dp9A01

1TE7A 2E5OA 1WK2A 1XNEA 2Z0TA 2DP9A 3IUWA 2KKUA 1S04A
chains in the Genus database with same CATH superfamily

1T5YA 3UAIA 1UOYA 3LJCA 1ZE1A 1WXXA 3C0KA 3M6WA 3LWQA 2CX0A 2DP9A 2J5TA 3M6UA 2AS0A 1Q7HA 2KKUA 1TE7A 1ZE2A 3ZV0C 2AUSA 1IT8A 1WK2A 1K8WA 2P38A 2CWWA 4CI3B 2AB4A 3HJYA 4Q1TA 3MQKA 1IT7A 3HAXA 3LWPA 1J2BA 3LDFA 1ZS7A 3D79A 4CI1B 3U28A 2HVYA 3M6VA 1ZL3A 1WXWA 3LWVA 2ANEA 2Z0TA 3M65A 2APOA 3LWRA 1SGVA 2B78A 3M4XA 3M6XA 3VSEA 2FRXA 3LWOA 1R3FA 4TZ4C 3IUWA 4CI2B 1SQWA 1S04A 2E5OA 2CX1A 1XNEA 2RFKA 2J5VA 1ZBOA 2EY4A 2Q07A 1R3EA 1IQ8A 3HJWA 4DMGA
chains in the Genus database with same CATH topology

1TE7A 2E5OA 1WK2A 1WHZA 1XNEA 2Z0TA 4C26A 2DP9A 4P78C 3IUWA 2KKUA 1S04A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1TE7 A;  2E5O A;  1WK2 A;  1XNE A;  2Z0T A;  2DP9 A;  3IUW A;  2KKU A;  1S04 A; 
#chains in the Genus database with same CATH topology
 1T5Y A;  3UAI A;  1UOY A;  3LJC A;  1ZE1 A;  1WXX A;  3C0K A;  3M6W A;  3LWQ A;  2CX0 A;  2DP9 A;  2J5T A;  3M6U A;  2AS0 A;  1Q7H A;  2KKU A;  1TE7 A;  1ZE2 A;  3ZV0 C;  2AUS A;  1IT8 A;  1WK2 A;  1K8W A;  2P38 A;  2CWW A;  4CI3 B;  2AB4 A;  3HJY A;  4Q1T A;  3MQK A;  1IT7 A;  3HAX A;  3LWP A;  1J2B A;  3LDF A;  1ZS7 A;  3D79 A;  4CI1 B;  3U28 A;  2HVY A;  3M6V A;  1ZL3 A;  1WXW A;  3LWV A;  2ANE A;  2Z0T A;  3M65 A;  2APO A;  3LWR A;  1SGV A;  2B78 A;  3M4X A;  3M6X A;  3VSE A;  2FRX A;  3LWO A;  1R3F A;  4TZ4 C;  3IUW A;  4CI2 B;  1SQW A;  1S04 A;  2E5O A;  2CX1 A;  1XNE A;  2RFK A;  2J5V A;  1ZBO A;  2EY4 A;  2Q07 A;  1R3E A;  1IQ8 A;  3HJW A;  4DMG A; 
#chains in the Genus database with same CATH homology
 1TE7 A;  2E5O A;  1WK2 A;  1WHZ A;  1XNE A;  2Z0T A;  4C26 A;  2DP9 A;  4P78 C;  3IUW A;  2KKU A;  1S04 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2DP9A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations