2KKUA

Solution structure of protein af2351 from archaeoglobus fulgidus. northeast structural genomics consortium target att9/ontario center for structural proteomics target af2351
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
139
structure length
139
Chain Sequence
MSKIVGVTYPIPKRFMDRFFKKGKDVFVKPATVWKELKPGMKFVFYQSHEDTGFVGEARIKRVVLSENPMQFFETFGDRVFLTKDELKEYMKSQERWGRRRESKKKKLWMAIELEDVKKYDKPIKPKRLVPVGGQYLRE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution structure of protein af2351 from Archaeoglobus fulgidus. Northeast Structural Genomics Consortium target AtT9/Ontario Center for Structural Proteomics Target af2351
rcsb
molecule tags Structural genomics, unknown function
source organism Archaeoglobus fulgidus
molecule keywords Uncharacterized protein
total genus 27
structure length 139
sequence length 139
ec nomenclature
pdb deposition date 2009-06-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04033 DUF365 Domain of unknown function (DUF365)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.130.30 Mainly Beta Roll Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 Hypothetical protein. 2kkuA00
1S04A 2E5OA 2DP9A 2KKUA 2Z0TA 1XNEA 3IUWA 1TE7A 1WK2A
chains in the Genus database with same CATH superfamily
4Q1TA 2EY4A 4CI1B 2CX1A 2P38A 2CX0A 3M6XA 1XNEA 4CI3B 1IT7A 3LWQA 1SGVA 2B78A 2Q07A 1ZBOA 1Q7HA 1SQWA 1ZS7A 3U28A 3M6WA 2APOA 1J2BA 2FRXA 2DP9A 1WXXA 1IT8A 3C0KA 1IQ8A 3LJCA 3IUWA 3VSEA 3D79A 3HAXA 3HJWA 1K8WA 1R3FA 3LWPA 3UAIA 1S04A 1R3EA 3MQKA 2KKUA 2J5TA 1T5YA 4TZ4C 4CI2B 4DMGA 3M65A 2ANEA 3LWVA 2AB4A 1UOYA 3M4XA 3LDFA 1ZL3A 2AUSA 2E5OA 3LWRA 2CWWA 2HVYA 2RFKA 2Z0TA 2AS0A 2J5VA 3M6UA 1TE7A 1WK2A 3M6VA 3LWOA 1ZE2A 3HJYA 1WXWA 1ZE1A 3ZV0C
chains in the Genus database with same CATH topology
1S04A 1WHZA 2E5OA 4P78C 2DP9A 2KKUA 2Z0TA 1XNEA 3IUWA 4C26A 1TE7A 1WK2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1S04 A;  2E5O A;  2DP9 A;  2KKU A;  2Z0T A;  1XNE A;  3IUW A;  1TE7 A;  1WK2 A; 
#chains in the Genus database with same CATH topology
 4Q1T A;  2EY4 A;  4CI1 B;  2CX1 A;  2P38 A;  2CX0 A;  3M6X A;  1XNE A;  4CI3 B;  1IT7 A;  3LWQ A;  1SGV A;  2B78 A;  2Q07 A;  1ZBO A;  1Q7H A;  1SQW A;  1ZS7 A;  3U28 A;  3M6W A;  2APO A;  1J2B A;  2FRX A;  2DP9 A;  1WXX A;  1IT8 A;  3C0K A;  1IQ8 A;  3LJC A;  3IUW A;  3VSE A;  3D79 A;  3HAX A;  3HJW A;  1K8W A;  1R3F A;  3LWP A;  3UAI A;  1S04 A;  1R3E A;  3MQK A;  2KKU A;  2J5T A;  1T5Y A;  4TZ4 C;  4CI2 B;  4DMG A;  3M65 A;  2ANE A;  3LWV A;  2AB4 A;  1UOY A;  3M4X A;  3LDF A;  1ZL3 A;  2AUS A;  2E5O A;  3LWR A;  2CWW A;  2HVY A;  2RFK A;  2Z0T A;  2AS0 A;  2J5V A;  3M6U A;  1TE7 A;  1WK2 A;  3M6V A;  3LWO A;  1ZE2 A;  3HJY A;  1WXW A;  1ZE1 A;  3ZV0 C; 
#chains in the Genus database with same CATH homology
 1S04 A;  1WHZ A;  2E5O A;  4P78 C;  2DP9 A;  2KKU A;  2Z0T A;  1XNE A;  3IUW A;  4C26 A;  1TE7 A;  1WK2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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