2KKU | Genus

Total Genus 27

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	27
sequence length	139
structure length	139
Chain Sequence	MSKIVGVTYPIPKRFMDRFFKKGKDVFVKPATVWKELKPGMKFVFYQSHEDTGFVGEARIKRVVLSENPMQFFETFGDRVFLTKDELKEYMKSQERWGRRRESKKKKLWMAIELEDVKKYDKPIKPKRLVPVGGQYLRE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 139 atoms

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139 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural genomics, unknown function
source organism	Archaeoglobus fulgidus
publication title	Solution structure of protein af2351 from Archaeoglobus fulgidus. Northeast Structural Genomics Consortium target AtT9/Ontario Center for Structural Proteomics Target af2351 rcsb
molecule keywords	Uncharacterized protein
total genus	27
structure length	139
sequence length	139
ec nomenclature
pdb deposition date	2009-06-29

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF04033	DUF365	Domain of unknown function (DUF365)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.130.30	Mainly Beta	Roll	Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4	Hypothetical protein.	2kkuA00

3IUWA 1WK2A 1XNEA 2DP9A 2Z0TA 2E5OA 2KKUA 1S04A 1TE7A
chains in the Genus database with same CATH superfamily

3LWOA 3HAXA 3HJYA 1Q7HA 3MQKA 3LWVA 2DP9A 1IT8A 3LWQA 1UOYA 1ZL3A 3VSEA 1IT7A 2APOA 1SQWA 1WXXA 1TE7A 3M4XA 3M6UA 4Q1TA 2RFKA 1ZS7A 1XNEA 1ZBOA 3D79A 3M65A 1R3EA 3LDFA 3M6XA 2J5VA 2CX0A 3HJWA 2AS0A 1R3FA 4DMGA 2FRXA 2B78A 3IUWA 3LWRA 3ZV0C 3UAIA 1ZE1A 2AUSA 3U28A 2CX1A 3LJCA 2EY4A 1WXWA 1T5YA 2CWWA 2E5OA 2KKUA 1S04A 2J5TA 2Z0TA 1J2BA 1WK2A 3M6WA 3LWPA 3C0KA 4TZ4C 1K8WA 2ANEA 2AB4A 1ZE2A 4CI2B 4CI3B 1SGVA 2P38A 2Q07A 1IQ8A 2HVYA 4CI1B 3M6VA
chains in the Genus database with same CATH topology

3IUWA 1WK2A 1XNEA 1WHZA 2DP9A 4P78C 2Z0TA 4C26A 2E5OA 2KKUA 1S04A 1TE7A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3IUW A;  1WK2 A;  1XNE A;  2DP9 A;  2Z0T A;  2E5O A;  2KKU A;  1S04 A;  1TE7 A; 
#chains in the Genus database with same CATH topology
 3LWO A;  3HAX A;  3HJY A;  1Q7H A;  3MQK A;  3LWV A;  2DP9 A;  1IT8 A;  3LWQ A;  1UOY A;  1ZL3 A;  3VSE A;  1IT7 A;  2APO A;  1SQW A;  1WXX A;  1TE7 A;  3M4X A;  3M6U A;  4Q1T A;  2RFK A;  1ZS7 A;  1XNE A;  1ZBO A;  3D79 A;  3M65 A;  1R3E A;  3LDF A;  3M6X A;  2J5V A;  2CX0 A;  3HJW A;  2AS0 A;  1R3F A;  4DMG A;  2FRX A;  2B78 A;  3IUW A;  3LWR A;  3ZV0 C;  3UAI A;  1ZE1 A;  2AUS A;  3U28 A;  2CX1 A;  3LJC A;  2EY4 A;  1WXW A;  1T5Y A;  2CWW A;  2E5O A;  2KKU A;  1S04 A;  2J5T A;  2Z0T A;  1J2B A;  1WK2 A;  3M6W A;  3LWP A;  3C0K A;  4TZ4 C;  1K8W A;  2ANE A;  2AB4 A;  1ZE2 A;  4CI2 B;  4CI3 B;  1SGV A;  2P38 A;  2Q07 A;  1IQ8 A;  2HVY A;  4CI1 B;  3M6V A; 
#chains in the Genus database with same CATH homology
 3IUW A;  1WK2 A;  1XNE A;  1WHZ A;  2DP9 A;  4P78 C;  2Z0T A;  4C26 A;  2E5O A;  2KKU A;  1S04 A;  1TE7 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2KKUA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations