1CO0A

Nmr study of trp repressor-mtr operator dna complex
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
105
structure length
105
Chain Sequence
QSPYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLLKSD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Allostery and Induced Fit, NMR and Molecular Modeling Study of the trp-repressor - mtr DNA complex
pubmed rcsb
molecule tags Transcription
source organism Escherichia coli
molecule keywords 5'-D(*TP*GP*TP*AP*CP*TP*CP*GP*TP*GP*TP*AP*CP*TP*GP*GP*TP*AP*
total genus 19
structure length 105
sequence length 105
chains with identical sequence B
ec nomenclature
pdb deposition date 1999-05-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01371 Trp_repressor Trp repressor protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.10 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A TrpR-like 1co0A00
3SSWN 1JHGA 1WRPR 1TRRA 3KORA 1TROA 3SSXN 3FRWA 1ZT9A 2OZ9R 3WRPA 2XDIA 1WRTR 1MI7R 1RCSA 1CO0A 3G1CA 1WRSR
chains in the Genus database with same CATH superfamily
4YQLA 1UAJA 4YQ7A 3KNUA 4YQGA 1TRRA 1UAKA 4H3YA 4YPWA 4YQCA 3QUVA 3SSXN 4YQ3A 4YQ9A 4YVJA 1MI7R 4YQ8A 4YQAA 1OY5A 3G1CA 4YQSA 4YPZA 4YQNA 4YQ4A 4YVKA 4YVHA 4YQ2A 4YPXA 4YQJA 3KORA 4YQRA 4YQOA 1TROA 4IG6A 1ZT9A 3WRPA 3KY7A 3FRWA 2XDIA 4YQKA 4MCDA 1P9PA 1WRSR 4YQQA 4YQIA 3SSWN 1CO0A 1UAMA 4YPYA 1WRPR 4YQ1A 4YQ0A 1RCSA 4YVIA 4YQDA 4YQ5A 2OZ9R 4YVGA 4YQBA 1JHGA 4MCBA 4H3ZA 4YQPA 3IEFA 4YQ6A 1UALA 4MCCA 5D9FA 1WRTR 4YQTA 3AXZA
chains in the Genus database with same CATH topology
3SSWN 1JHGA 1WRPR 1TRRA 3KORA 1TROA 3SSXN 3FRWA 1ZT9A 2OZ9R 3WRPA 2XDIA 1WRTR 1MI7R 1RCSA 1CO0A 3G1CA 1WRSR
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SSW N;  1JHG A;  1WRP R;  1TRR A;  3KOR A;  1TRO A;  3SSX N;  3FRW A;  1ZT9 A;  2OZ9 R;  3WRP A;  2XDI A;  1WRT R;  1MI7 R;  1RCS A;  1CO0 A;  3G1C A;  1WRS R; 
#chains in the Genus database with same CATH topology
 4YQL A;  1UAJ A;  4YQ7 A;  3KNU A;  4YQG A;  1TRR A;  1UAK A;  4H3Y A;  4YPW A;  4YQC A;  3QUV A;  3SSX N;  4YQ3 A;  4YQ9 A;  4YVJ A;  1MI7 R;  4YQ8 A;  4YQA A;  1OY5 A;  3G1C A;  4YQS A;  4YPZ A;  4YQN A;  4YQ4 A;  4YVK A;  4YVH A;  4YQ2 A;  4YPX A;  4YQJ A;  3KOR A;  4YQR A;  4YQO A;  1TRO A;  4IG6 A;  1ZT9 A;  3WRP A;  3KY7 A;  3FRW A;  2XDI A;  4YQK A;  4MCD A;  1P9P A;  1WRS R;  4YQQ A;  4YQI A;  3SSW N;  1CO0 A;  1UAM A;  4YPY A;  1WRP R;  4YQ1 A;  4YQ0 A;  1RCS A;  4YVI A;  4YQD A;  4YQ5 A;  2OZ9 R;  4YVG A;  4YQB A;  1JHG A;  4MCB A;  4H3Z A;  4YQP A;  3IEF A;  4YQ6 A;  1UAL A;  4MCC A;  5D9F A;  1WRT R;  4YQT A;  3AXZ A; 
#chains in the Genus database with same CATH homology
 3SSW N;  1JHG A;  1WRP R;  1TRR A;  3KOR A;  1TRO A;  3SSX N;  3FRW A;  1ZT9 A;  2OZ9 R;  3WRP A;  2XDI A;  1WRT R;  1MI7 R;  1RCS A;  1CO0 A;  3G1C A;  1WRS R; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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