1CO0A

Nmr study of trp repressor-mtr operator dna complex
Total Genus 19

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
105
structure length
105
Chain Sequence
QSPYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLLKSD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TIV1 (9-12)TVIII1 (8-11)TII'1 (12-15)TIV2 (14-17)AH4 (71-75)AH5 (78-90)TVIII2 (90-93)AH6 (95-103)TIV6 (92-95)EMPTYAH1 (17-31)AH2 (34-42)TIV5 (75-78)AH3 (46-63)TIV3 (67-70)Updating...
connected with : NaN
publication title Allostery and Induced Fit, NMR and Molecular Modeling Study of the trp-repressor - mtr DNA complex
pubmed rcsb
molecule tags Transcription
source organism Escherichia coli
molecule keywords 5'-D(*TP*GP*TP*AP*CP*TP*CP*GP*TP*GP*TP*AP*CP*TP*GP*GP*TP*AP*
total genus 19
structure length 105
sequence length 105
chains with identical sequence B
ec nomenclature
pdb deposition date 1999-05-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01371 Trp_repressor Trp repressor protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.10 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A TrpR-like 1co0A00
2OZ9R 1TRRA 1WRTR 1ZT9A 1WRSR 3FRWA 3G1CA 3SSXN 1RCSA 1WRPR 3WRPA 2XDIA 3KORA 1JHGA 1TROA 3SSWN 1MI7R 1CO0A
chains in the Genus database with same CATH superfamily
4YQRA 4YVHA 1WRSR 4MCCA 4YPYA 4IG6A 4YVKA 1TROA 2XDIA 4MCDA 1OY5A 1TRRA 1WRTR 1P9PA 3IEFA 4YQ9A 3G1CA 1UAMA 4YQIA 3AXZA 3KORA 1MI7R 4YQTA 4YQ5A 4YQ3A 4YPWA 4YQQA 4YQ1A 4YPZA 4YVJA 4YQOA 3KNUA 3QUVA 4YQSA 4YQKA 5D9FA 4MCBA 4YQCA 4YQ4A 4YQBA 1WRPR 4YQNA 4YVIA 1RCSA 1UAKA 4YQJA 4YQ2A 1UAJA 1CO0A 1UALA 1ZT9A 4YQ8A 3FRWA 3SSXN 4H3YA 3KY7A 3SSWN 4YQDA 3WRPA 1JHGA 4YQLA 4YQ6A 4YPXA 4H3ZA 4YQ7A 4YQ0A 4YQGA 4YQAA 4YQPA 2OZ9R 4YVGA
chains in the Genus database with same CATH topology
2OZ9R 1TRRA 1WRTR 1ZT9A 1WRSR 3FRWA 3G1CA 3SSXN 1RCSA 1WRPR 3WRPA 2XDIA 3KORA 1JHGA 1TROA 3SSWN 1MI7R 1CO0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OZ9 R;  1TRR A;  1WRT R;  1ZT9 A;  1WRS R;  3FRW A;  3G1C A;  3SSX N;  1RCS A;  1WRP R;  3WRP A;  2XDI A;  3KOR A;  1JHG A;  1TRO A;  3SSW N;  1MI7 R;  1CO0 A; 
#chains in the Genus database with same CATH topology
 4YQR A;  4YVH A;  1WRS R;  4MCC A;  4YPY A;  4IG6 A;  4YVK A;  1TRO A;  2XDI A;  4MCD A;  1OY5 A;  1TRR A;  1WRT R;  1P9P A;  3IEF A;  4YQ9 A;  3G1C A;  1UAM A;  4YQI A;  3AXZ A;  3KOR A;  1MI7 R;  4YQT A;  4YQ5 A;  4YQ3 A;  4YPW A;  4YQQ A;  4YQ1 A;  4YPZ A;  4YVJ A;  4YQO A;  3KNU A;  3QUV A;  4YQS A;  4YQK A;  5D9F A;  4MCB A;  4YQC A;  4YQ4 A;  4YQB A;  1WRP R;  4YQN A;  4YVI A;  1RCS A;  1UAK A;  4YQJ A;  4YQ2 A;  1UAJ A;  1CO0 A;  1UAL A;  1ZT9 A;  4YQ8 A;  3FRW A;  3SSX N;  4H3Y A;  3KY7 A;  3SSW N;  4YQD A;  3WRP A;  1JHG A;  4YQL A;  4YQ6 A;  4YPX A;  4H3Z A;  4YQ7 A;  4YQ0 A;  4YQG A;  4YQA A;  4YQP A;  2OZ9 R;  4YVG A; 
#chains in the Genus database with same CATH homology
 2OZ9 R;  1TRR A;  1WRT R;  1ZT9 A;  1WRS R;  3FRW A;  3G1C A;  3SSX N;  1RCS A;  1WRP R;  3WRP A;  2XDI A;  3KOR A;  1JHG A;  1TRO A;  3SSW N;  1MI7 R;  1CO0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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