1CO0A

Nmr study of trp repressor-mtr operator dna complex
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
105
structure length
105
Chain Sequence
QSPYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLLKSD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Allostery and Induced Fit, NMR and Molecular Modeling Study of the trp-repressor - mtr DNA complex
pubmed rcsb
molecule tags Transcription
source organism Escherichia coli
molecule keywords 5'-D(*TP*GP*TP*AP*CP*TP*CP*GP*TP*GP*TP*AP*CP*TP*GP*GP*TP*AP*
total genus 19
structure length 105
sequence length 105
chains with identical sequence B
ec nomenclature
pdb deposition date 1999-05-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01371 Trp_repressor Trp repressor protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.10 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A TrpR-like 1co0A00
2XDIA 1CO0A 1TROA 1TRRA 1JHGA 3G1CA 1WRSR 3SSXN 3KORA 1ZT9A 3FRWA 3WRPA 3SSWN 1MI7R 1RCSA 2OZ9R 1WRTR 1WRPR
chains in the Genus database with same CATH superfamily
4YPZA 4YQTA 4IG6A 4YQ6A 4YVIA 4YQPA 3KY7A 4YQ4A 4H3YA 4YVGA 1UAMA 3SSXN 4YQ3A 3AXZA 3FRWA 4MCCA 4YQKA 2OZ9R 3SSWN 4YVJA 1WRTR 1WRPR 4YQDA 2XDIA 4YVKA 1JHGA 4YQ2A 1WRSR 4YPYA 3WRPA 4YQCA 1UALA 4YQQA 5D9FA 4YQ7A 4YQ1A 1RCSA 4YPWA 4H3ZA 4YPXA 4YQIA 4MCBA 1UAJA 3QUVA 4YVHA 1OY5A 4YQNA 4MCDA 4YQBA 3KORA 1ZT9A 1P9PA 4YQJA 4YQOA 4YQLA 4YQ0A 1CO0A 4YQGA 4YQAA 1UAKA 3G1CA 4YQRA 1TROA 1TRRA 4YQSA 3IEFA 4YQ5A 4YQ9A 1MI7R 4YQ8A 3KNUA
chains in the Genus database with same CATH topology
2XDIA 1CO0A 1TROA 1TRRA 1JHGA 3G1CA 1WRSR 3SSXN 3KORA 1ZT9A 3FRWA 3WRPA 3SSWN 1MI7R 1RCSA 2OZ9R 1WRTR 1WRPR
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XDI A;  1CO0 A;  1TRO A;  1TRR A;  1JHG A;  3G1C A;  1WRS R;  3SSX N;  3KOR A;  1ZT9 A;  3FRW A;  3WRP A;  3SSW N;  1MI7 R;  1RCS A;  2OZ9 R;  1WRT R;  1WRP R; 
#chains in the Genus database with same CATH topology
 4YPZ A;  4YQT A;  4IG6 A;  4YQ6 A;  4YVI A;  4YQP A;  3KY7 A;  4YQ4 A;  4H3Y A;  4YVG A;  1UAM A;  3SSX N;  4YQ3 A;  3AXZ A;  3FRW A;  4MCC A;  4YQK A;  2OZ9 R;  3SSW N;  4YVJ A;  1WRT R;  1WRP R;  4YQD A;  2XDI A;  4YVK A;  1JHG A;  4YQ2 A;  1WRS R;  4YPY A;  3WRP A;  4YQC A;  1UAL A;  4YQQ A;  5D9F A;  4YQ7 A;  4YQ1 A;  1RCS A;  4YPW A;  4H3Z A;  4YPX A;  4YQI A;  4MCB A;  1UAJ A;  3QUV A;  4YVH A;  1OY5 A;  4YQN A;  4MCD A;  4YQB A;  3KOR A;  1ZT9 A;  1P9P A;  4YQJ A;  4YQO A;  4YQL A;  4YQ0 A;  1CO0 A;  4YQG A;  4YQA A;  1UAK A;  3G1C A;  4YQR A;  1TRO A;  1TRR A;  4YQS A;  3IEF A;  4YQ5 A;  4YQ9 A;  1MI7 R;  4YQ8 A;  3KNU A; 
#chains in the Genus database with same CATH homology
 2XDI A;  1CO0 A;  1TRO A;  1TRR A;  1JHG A;  3G1C A;  1WRS R;  3SSX N;  3KOR A;  1ZT9 A;  3FRW A;  3WRP A;  3SSW N;  1MI7 R;  1RCS A;  2OZ9 R;  1WRT R;  1WRP R; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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