1WRPR

Flexibility of the dna-binding domains of trp repressor
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
102
structure length
102
Chain Sequence
QSPYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding regulatory protein
molecule keywords TRP REPRESSOR
publication title Flexibility of the DNA-binding domains of trp repressor.
pubmed doi rcsb
source organism Escherichia coli
total genus 35
structure length 102
sequence length 102
ec nomenclature
pdb deposition date 1987-12-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
R PF01371 Trp_repressor Trp repressor protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.10 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A TrpR-like 1wrpR00
1RCSA 3G1CA 1CO0A 3KORA 2XDIA 3FRWA 1TRRA 1MI7R 1ZT9A 3WRPA 1WRSR 1WRTR 2OZ9R 3SSXN 1TROA 3SSWN 1JHGA 1WRPR
chains in the Genus database with same CATH superfamily
4H3ZA 3G1CA 3AXZA 3FRWA 3QUVA 4YQRA 1UALA 1ZT9A 4MCBA 4YQ4A 4YPZA 4YQJA 1WRSR 1WRTR 2OZ9R 4YPWA 4YQOA 3SSWN 3SSXN 1UAJA 1MI7R 4YQSA 5D9FA 4YQ9A 4H3YA 4YQ8A 1CO0A 3KORA 4YVIA 3IEFA 4YQ7A 4YQAA 4YQDA 4YQ3A 1JHGA 4YVJA 4YQKA 4YQQA 1UAMA 1RCSA 4YVHA 4YQ2A 4YQPA 4YQ5A 1TRRA 3KNUA 4YQ0A 4IG6A 4YQBA 4YQLA 3WRPA 4MCCA 4YQNA 1UAKA 4YVGA 4YQIA 3KY7A 4YQCA 4YQTA 2XDIA 4YQ1A 4YVKA 1OY5A 4YQGA 4YPXA 4YPYA 1P9PA 1TROA 4YQ6A 4MCDA 1WRPR
chains in the Genus database with same CATH topology
1RCSA 3G1CA 1CO0A 3KORA 2XDIA 3FRWA 1TRRA 1MI7R 1ZT9A 3WRPA 1WRSR 1WRTR 2OZ9R 3SSXN 1TROA 3SSWN 1JHGA 1WRPR
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RCS A;  3G1C A;  1CO0 A;  3KOR A;  2XDI A;  3FRW A;  1TRR A;  1MI7 R;  1ZT9 A;  3WRP A;  1WRS R;  1WRT R;  2OZ9 R;  3SSX N;  1TRO A;  3SSW N;  1JHG A;  1WRP R; 
#chains in the Genus database with same CATH topology
 4H3Z A;  3G1C A;  3AXZ A;  3FRW A;  3QUV A;  4YQR A;  1UAL A;  1ZT9 A;  4MCB A;  4YQ4 A;  4YPZ A;  4YQJ A;  1WRS R;  1WRT R;  2OZ9 R;  4YPW A;  4YQO A;  3SSW N;  3SSX N;  1UAJ A;  1MI7 R;  4YQS A;  5D9F A;  4YQ9 A;  4H3Y A;  4YQ8 A;  1CO0 A;  3KOR A;  4YVI A;  3IEF A;  4YQ7 A;  4YQA A;  4YQD A;  4YQ3 A;  1JHG A;  4YVJ A;  4YQK A;  4YQQ A;  1UAM A;  1RCS A;  4YVH A;  4YQ2 A;  4YQP A;  4YQ5 A;  1TRR A;  3KNU A;  4YQ0 A;  4IG6 A;  4YQB A;  4YQL A;  3WRP A;  4MCC A;  4YQN A;  1UAK A;  4YVG A;  4YQI A;  3KY7 A;  4YQC A;  4YQT A;  2XDI A;  4YQ1 A;  4YVK A;  1OY5 A;  4YQG A;  4YPX A;  4YPY A;  1P9P A;  1TRO A;  4YQ6 A;  4MCD A;  1WRP R; 
#chains in the Genus database with same CATH homology
 1RCS A;  3G1C A;  1CO0 A;  3KOR A;  2XDI A;  3FRW A;  1TRR A;  1MI7 R;  1ZT9 A;  3WRP A;  1WRS R;  1WRT R;  2OZ9 R;  3SSX N;  1TRO A;  3SSW N;  1JHG A;  1WRP R; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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