1WRPR

Flexibility of the dna-binding domains of trp repressor
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
102
structure length
102
Chain Sequence
QSPYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords TRP REPRESSOR
publication title Flexibility of the DNA-binding domains of trp repressor.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Dna binding regulatory protein
total genus 35
structure length 102
sequence length 102
ec nomenclature
pdb deposition date 1987-12-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
R PF01371 Trp_repressor Trp repressor protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.10 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A TrpR-like 1wrpR00
1CO0A 1JHGA 3SSWN 1MI7R 3WRPA 1TROA 1WRSR 1WRTR 3G1CA 2OZ9R 1RCSA 3KORA 1TRRA 3FRWA 2XDIA 3SSXN 1ZT9A 1WRPR
chains in the Genus database with same CATH superfamily
4IG6A 4YVGA 1UAJA 1CO0A 4MCDA 1TROA 4YQ8A 3IEFA 3QUVA 4YQRA 4YQCA 4YQ4A 4YPYA 3FRWA 4YQJA 4YVKA 5D9FA 1OY5A 1UAKA 3WRPA 4MCBA 4YPZA 4YQOA 4H3ZA 4YQQA 3KORA 4YQIA 3KNUA 4YQKA 4YQGA 4YPWA 4YQSA 2XDIA 1WRPR 4YQ6A 1JHGA 4H3YA 4YQ1A 4YQ5A 1WRSR 4YQ9A 1WRTR 3G1CA 4YVHA 4YQDA 1UAMA 4YQAA 4YQLA 3SSXN 4YQ0A 3AXZA 4YQBA 1ZT9A 1P9PA 4YPXA 4YQPA 3SSWN 4YQNA 4YVIA 4YQ2A 4YQ7A 2OZ9R 4YQTA 3KY7A 4YQ3A 1RCSA 4MCCA 1TRRA 1UALA 4YVJA 1MI7R
chains in the Genus database with same CATH topology
1CO0A 1JHGA 3SSWN 1MI7R 3WRPA 1TROA 1WRSR 1WRTR 3G1CA 2OZ9R 1RCSA 3KORA 1TRRA 3FRWA 2XDIA 3SSXN 1ZT9A 1WRPR
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1CO0 A;  1JHG A;  3SSW N;  1MI7 R;  3WRP A;  1TRO A;  1WRS R;  1WRT R;  3G1C A;  2OZ9 R;  1RCS A;  3KOR A;  1TRR A;  3FRW A;  2XDI A;  3SSX N;  1ZT9 A;  1WRP R; 
#chains in the Genus database with same CATH topology
 4IG6 A;  4YVG A;  1UAJ A;  1CO0 A;  4MCD A;  1TRO A;  4YQ8 A;  3IEF A;  3QUV A;  4YQR A;  4YQC A;  4YQ4 A;  4YPY A;  3FRW A;  4YQJ A;  4YVK A;  5D9F A;  1OY5 A;  1UAK A;  3WRP A;  4MCB A;  4YPZ A;  4YQO A;  4H3Z A;  4YQQ A;  3KOR A;  4YQI A;  3KNU A;  4YQK A;  4YQG A;  4YPW A;  4YQS A;  2XDI A;  1WRP R;  4YQ6 A;  1JHG A;  4H3Y A;  4YQ1 A;  4YQ5 A;  1WRS R;  4YQ9 A;  1WRT R;  3G1C A;  4YVH A;  4YQD A;  1UAM A;  4YQA A;  4YQL A;  3SSX N;  4YQ0 A;  3AXZ A;  4YQB A;  1ZT9 A;  1P9P A;  4YPX A;  4YQP A;  3SSW N;  4YQN A;  4YVI A;  4YQ2 A;  4YQ7 A;  2OZ9 R;  4YQT A;  3KY7 A;  4YQ3 A;  1RCS A;  4MCC A;  1TRR A;  1UAL A;  4YVJ A;  1MI7 R; 
#chains in the Genus database with same CATH homology
 1CO0 A;  1JHG A;  3SSW N;  1MI7 R;  3WRP A;  1TRO A;  1WRS R;  1WRT R;  3G1C A;  2OZ9 R;  1RCS A;  3KOR A;  1TRR A;  3FRW A;  2XDI A;  3SSX N;  1ZT9 A;  1WRP R; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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