3WRPA

Flexibility of the dna-binding domains of trp repressor
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
101
structure length
101
Chain Sequence
SAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLLKSD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords TRP REPRESSOR
publication title Flexibility of the DNA-binding domains of trp repressor.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Dna binding regulatory protein
total genus 36
structure length 101
sequence length 101
ec nomenclature
pdb deposition date 1987-12-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01371 Trp_repressor Trp repressor protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.10 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A TrpR-like 3wrpA00
3SSWN 1ZT9A 3WRPA 3SSXN 1WRSR 3G1CA 2OZ9R 3KORA 1JHGA 1RCSA 1TROA 2XDIA 1CO0A 1WRTR 3FRWA 1TRRA 1MI7R 1WRPR
chains in the Genus database with same CATH superfamily
3AXZA 4YQ9A 3IEFA 4YVJA 4YPWA 1TRRA 1UAJA 4YQRA 4MCBA 4YQSA 4YQ5A 4YVIA 4IG6A 1OY5A 4MCCA 4YQOA 4MCDA 4YVGA 4YQ7A 3SSWN 4YQTA 3KNUA 4YVHA 4YPYA 3G1CA 3QUVA 3KORA 4YPZA 4YQ3A 4YQIA 1WRTR 4YQNA 1UAMA 1UAKA 1MI7R 4YQ6A 5D9FA 4YQPA 1ZT9A 3SSXN 1WRSR 3KY7A 4YPXA 1JHGA 4YVKA 2XDIA 3FRWA 4YQBA 4YQCA 4YQGA 4YQDA 1CO0A 1P9PA 4YQ4A 1UALA 3WRPA 4YQKA 4YQQA 2OZ9R 4YQ2A 4YQJA 4YQLA 4H3YA 1RCSA 1TROA 4YQ1A 4YQAA 4YQ8A 4YQ0A 1WRPR 4H3ZA
chains in the Genus database with same CATH topology
3SSWN 1ZT9A 3WRPA 3SSXN 1WRSR 3G1CA 2OZ9R 3KORA 1JHGA 1RCSA 1TROA 2XDIA 1CO0A 1WRTR 3FRWA 1TRRA 1MI7R 1WRPR
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SSW N;  1ZT9 A;  3WRP A;  3SSX N;  1WRS R;  3G1C A;  2OZ9 R;  3KOR A;  1JHG A;  1RCS A;  1TRO A;  2XDI A;  1CO0 A;  1WRT R;  3FRW A;  1TRR A;  1MI7 R;  1WRP R; 
#chains in the Genus database with same CATH topology
 3AXZ A;  4YQ9 A;  3IEF A;  4YVJ A;  4YPW A;  1TRR A;  1UAJ A;  4YQR A;  4MCB A;  4YQS A;  4YQ5 A;  4YVI A;  4IG6 A;  1OY5 A;  4MCC A;  4YQO A;  4MCD A;  4YVG A;  4YQ7 A;  3SSW N;  4YQT A;  3KNU A;  4YVH A;  4YPY A;  3G1C A;  3QUV A;  3KOR A;  4YPZ A;  4YQ3 A;  4YQI A;  1WRT R;  4YQN A;  1UAM A;  1UAK A;  1MI7 R;  4YQ6 A;  5D9F A;  4YQP A;  1ZT9 A;  3SSX N;  1WRS R;  3KY7 A;  4YPX A;  1JHG A;  4YVK A;  2XDI A;  3FRW A;  4YQB A;  4YQC A;  4YQG A;  4YQD A;  1CO0 A;  1P9P A;  4YQ4 A;  1UAL A;  3WRP A;  4YQK A;  4YQQ A;  2OZ9 R;  4YQ2 A;  4YQJ A;  4YQL A;  4H3Y A;  1RCS A;  1TRO A;  4YQ1 A;  4YQA A;  4YQ8 A;  4YQ0 A;  1WRP R;  4H3Z A; 
#chains in the Genus database with same CATH homology
 3SSW N;  1ZT9 A;  3WRP A;  3SSX N;  1WRS R;  3G1C A;  2OZ9 R;  3KOR A;  1JHG A;  1RCS A;  1TRO A;  2XDI A;  1CO0 A;  1WRT R;  3FRW A;  1TRR A;  1MI7 R;  1WRP R; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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