3WRPA

Flexibility of the dna-binding domains of trp repressor
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
101
structure length
101
Chain Sequence
SAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLLKSD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding regulatory protein
molecule keywords TRP REPRESSOR
publication title Flexibility of the DNA-binding domains of trp repressor.
pubmed doi rcsb
source organism Escherichia coli
total genus 36
structure length 101
sequence length 101
ec nomenclature
pdb deposition date 1987-12-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01371 Trp_repressor Trp repressor protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.10 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A TrpR-like 3wrpA00
1TROA 3SSWN 3SSXN 3FRWA 1RCSA 1CO0A 1JHGA 1MI7R 2XDIA 3WRPA 3KORA 1WRSR 1WRTR 1TRRA 1ZT9A 1WRPR 3G1CA 2OZ9R
chains in the Genus database with same CATH superfamily
4YPYA 4YQKA 1JHGA 1OY5A 3AXZA 4YPWA 3WRPA 1WRTR 3KY7A 4YQLA 1UALA 4YQ3A 1TRRA 4YQIA 1TROA 4YQ8A 5D9FA 1UAMA 3SSWN 4YQGA 2XDIA 1P9PA 1UAJA 4YQNA 4YQ9A 4H3YA 3IEFA 4MCCA 4YQAA 4MCBA 1ZT9A 4YVHA 4YVIA 4H3ZA 4YQOA 3SSXN 1RCSA 1CO0A 1MI7R 4YQQA 4YQ2A 4YQSA 4YQ6A 4YQJA 4YPXA 4YQ5A 1WRPR 4YQCA 4YQ1A 2OZ9R 1UAKA 4YQ4A 3FRWA 4YQBA 4YQTA 4MCDA 4IG6A 4YQ7A 3KORA 1WRSR 3KNUA 4YPZA 4YQ0A 4YQDA 4YVJA 4YVKA 3QUVA 3G1CA 4YQPA 4YVGA 4YQRA
chains in the Genus database with same CATH topology
1TROA 3SSWN 3SSXN 3FRWA 1RCSA 1CO0A 1JHGA 1MI7R 2XDIA 3WRPA 3KORA 1WRSR 1WRTR 1TRRA 1ZT9A 1WRPR 3G1CA 2OZ9R
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TRO A;  3SSW N;  3SSX N;  3FRW A;  1RCS A;  1CO0 A;  1JHG A;  1MI7 R;  2XDI A;  3WRP A;  3KOR A;  1WRS R;  1WRT R;  1TRR A;  1ZT9 A;  1WRP R;  3G1C A;  2OZ9 R; 
#chains in the Genus database with same CATH topology
 4YPY A;  4YQK A;  1JHG A;  1OY5 A;  3AXZ A;  4YPW A;  3WRP A;  1WRT R;  3KY7 A;  4YQL A;  1UAL A;  4YQ3 A;  1TRR A;  4YQI A;  1TRO A;  4YQ8 A;  5D9F A;  1UAM A;  3SSW N;  4YQG A;  2XDI A;  1P9P A;  1UAJ A;  4YQN A;  4YQ9 A;  4H3Y A;  3IEF A;  4MCC A;  4YQA A;  4MCB A;  1ZT9 A;  4YVH A;  4YVI A;  4H3Z A;  4YQO A;  3SSX N;  1RCS A;  1CO0 A;  1MI7 R;  4YQQ A;  4YQ2 A;  4YQS A;  4YQ6 A;  4YQJ A;  4YPX A;  4YQ5 A;  1WRP R;  4YQC A;  4YQ1 A;  2OZ9 R;  1UAK A;  4YQ4 A;  3FRW A;  4YQB A;  4YQT A;  4MCD A;  4IG6 A;  4YQ7 A;  3KOR A;  1WRS R;  3KNU A;  4YPZ A;  4YQ0 A;  4YQD A;  4YVJ A;  4YVK A;  3QUV A;  3G1C A;  4YQP A;  4YVG A;  4YQR A; 
#chains in the Genus database with same CATH homology
 1TRO A;  3SSW N;  3SSX N;  3FRW A;  1RCS A;  1CO0 A;  1JHG A;  1MI7 R;  2XDI A;  3WRP A;  3KOR A;  1WRS R;  1WRT R;  1TRR A;  1ZT9 A;  1WRP R;  3G1C A;  2OZ9 R; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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