4YQJA

Crystal structure of trmd, a m1g37 trna methyltransferase with sam-competitive compounds
Total Genus 72
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
248
structure length
237
Chain Sequence
SHMWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVLGDGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLALTDEQRKLLKEAQAEHNS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase/transferase inhibitor
source organism Haemophilus influenzae (strain atcc 51907 / dsm 11121 / kw20 / rd)
publication title Crystal structure of TrmD, a M1G37 tRNA Methyltransferase with SAM-competitive compounds
rcsb
molecule keywords tRNA (guanine-N(1)-)-methyltransferase
total genus 72
structure length 237
sequence length 248
ec nomenclature ec 2.1.1.228: tRNA (guanine(37)-N(1))-methyltransferase.
pdb deposition date 2015-03-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01746 tRNA_m1G_MT tRNA (Guanine-1)-methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.20 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A tRNA(m1g37)methyltransferase, domain 2 4yqjA02
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 4yqjA01
2QWVA 3AI9X 1J85A 1VHKA 1O6DA 4X3MA 1K3RA 4CNDA 3NK7A 3L8UA 4JALA 2I6DA 1UAKA 4YVJA 1X7OA 4YPXA 4YQNA 5CO4A 4CNEA 4YQ4A 4YQOA 3OIIA 4JAKA 1IPAA 5D9FA 4YQLA 1GZ0A 3GYQA 3AIAA 5GMCA 3IC6A 4X3LA 1UAJA 4L69A 2V3KA 2EGVA 4KGNA 4YQIA 4YQ5A 1UALA 1X7PA 3E5YA 2Z0YA 5GM8A 4YVHA 3O7BA 4YPWA 5FAIA 4KDZA 4YPYA 1NXZA 5GMBA 3IEFA 4YQSA 4MCCA 4YQDA 1VHYA 3AXZA 3N4JA 4YVKA 4YQ8A 3BBHA 4PZKA 4H3YA 3OIJA 3KW2A 4YQ1A 1OY5A 1Z85A 4RG1A 4E8BA 3KY7A 3OINA 4H3ZA 4YQCA 2O3AA 3QUVA 4YQ2A 4YQAA 4YQKA 3KNUA 4MCDA 4YQGA 3ONPA 4CNGA 1UAMA 1ZJRA 3NK6A 3BBDA 4YQ6A 4YQJA 4YVIA 4YQ3A 1VH0A 4IG6A 2QMMA 1NS5A 4YQ7A 2CX8A 3DCMX 1P9PA 2YY8A 4J3CA 1V2XA 4YQ0A 2HA8A 1TO0A 4XBOA 3N4KA 4MCBA 4YQRA 4YQ9A 4YQTA 3KTYA 4FAKA 4YVGA 4YQPA 4YPZA 3ILKA 2EGWA 4CNFA 4YQQA 1MXIA 4YQBA 2V3JA 1V6ZA 3BBEA
chains in the Genus database with same CATH superfamily
2QWVA 3AI9X 1J85A 1VHKA 1O6DA 4X3MA 1K3RA 4CNDA 3NK7A 3L8UA 1CO0A 4JALA 2I6DA 1UAKA 4YVJA 1X7OA 1MI7R 4YPXA 4YQNA 5CO4A 4CNEA 4YQ4A 4YQOA 3OIIA 4JAKA 1IPAA 5D9FA 4YQLA 1GZ0A 3SSXN 4JWFA 3GYQA 3AIAA 3KORA 5GMCA 3IC6A 4X3LA 1UAJA 1TROA 4L69A 2V3KA 2EGVA 4KGNA 4YQIA 4YQ5A 3SSWN 1UALA 1X7PA 3E5YA 2Z0YA 5GM8A 4YVHA 3O7BA 1JHGA 4YPWA 5FAIA 4KDZA 4YPYA 1ZT9A 4JWGA 1NXZA 5GMBA 3IEFA 4YQSA 4MCCA 4YQDA 1VHYA 2OZ9R 3AXZA 3N4JA 4YVKA 1RCSA 4YQ8A 3BBHA 4PZKA 4H3YA 3OIJA 3KW2A 4YQ1A 1OY5A 1WRSR 1Z85A 4RG1A 4E8BA 3KY7A 3OINA 4H3ZA 4YQCA 2O3AA 3QUVA 4YQ2A 4YQAA 4YQKA 3KNUA 4MCDA 2XDIA 4YQGA 3ONPA 4CNGA 3FRWA 1UAMA 1ZJRA 3NK6A 3BBDA 4YQ6A 4YQJA 4YVIA 4YQ3A 4IG6A 1VH0A 1TRRA 2QMMA 1NS5A 4YQ7A 2CX8A 3DCMX 1P9PA 2YY8A 4J3CA 1V2XA 4YQ0A 2HA8A 1TO0A 4XBOA 1WRTR 1WRPR 3N4KA 4MCBA 4YQRA 4YQ9A 4YQTA 3KTYA 4FAKA 4YVGA 4YQPA 4YPZA 3ILKA 4FMWA 3G1CA 2EGWA 3WRPA 4JWJA 4CNFA 4YQQA 1MXIA 4YQBA 2V3JA 4JWHA 1V6ZA 3BBEA
chains in the Genus database with same CATH topology
2QWVA 3AI9X 1J85A 1VHKA 1O6DA 4X3MA 1K3RA 4CNDA 3NK7A 3L8UA 4JALA 2I6DA 1UAKA 4YVJA 1X7OA 4YPXA 4YQNA 5CO4A 4CNEA 4YQ4A 4YQOA 3OIIA 4JAKA 1IPAA 5D9FA 4YQLA 1GZ0A 4JWFA 3GYQA 3AIAA 5GMCA 3IC6A 4X3LA 1UAJA 4L69A 2V3KA 2EGVA 4KGNA 4YQIA 4YQ5A 1UALA 1X7PA 3E5YA 2Z0YA 5GM8A 4YVHA 3O7BA 4YPWA 5FAIA 4KDZA 4YPYA 4JWGA 1NXZA 5GMBA 3IEFA 4YQSA 4MCCA 4YQDA 1VHYA 3AXZA 3N4JA 4YVKA 4YQ8A 3BBHA 4PZKA 4H3YA 3OIJA 3KW2A 4YQ1A 1OY5A 1Z85A 4RG1A 4E8BA 3KY7A 3OINA 4H3ZA 4YQCA 2O3AA 3QUVA 4YQ2A 4YQAA 4YQKA 3KNUA 4MCDA 4YQGA 3ONPA 4CNGA 1UAMA 1ZJRA 3NK6A 3BBDA 4YQ6A 4YQJA 4YVIA 4YQ3A 1VH0A 4IG6A 2QMMA 1NS5A 4YQ7A 2CX8A 3DCMX 1P9PA 2YY8A 4J3CA 1V2XA 4YQ0A 2HA8A 1TO0A 4XBOA 3N4KA 4MCBA 4YQRA 4YQ9A 4YQTA 3KTYA 4FAKA 4YVGA 4YQPA 4YPZA 3ILKA 4FMWA 2EGWA 4JWJA 4CNFA 4YQQA 1MXIA 4YQBA 2V3JA 4JWHA 1V6ZA 3BBEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QWV A;  3AI9 X;  1J85 A;  1VHK A;  1O6D A;  4X3M A;  1K3R A;  4CND A;  3NK7 A;  3L8U A;  4JAL A;  2I6D A;  1UAK A;  4YVJ A;  1X7O A;  4YPX A;  4YQN A;  5CO4 A;  4CNE A;  4YQ4 A;  4YQO A;  3OII A;  4JAK A;  1IPA A;  5D9F A;  4YQL A;  1GZ0 A;  3GYQ A;  3AIA A;  5GMC A;  3IC6 A;  4X3L A;  1UAJ A;  4L69 A;  2V3K A;  2EGV A;  4KGN A;  4YQI A;  4YQ5 A;  1UAL A;  1X7P A;  3E5Y A;  2Z0Y A;  5GM8 A;  4YVH A;  3O7B A;  4YPW A;  5FAI A;  4KDZ A;  4YPY A;  1NXZ A;  5GMB A;  3IEF A;  4YQS A;  4MCC A;  4YQD A;  1VHY A;  3AXZ A;  3N4J A;  4YVK A;  4YQ8 A;  3BBH A;  4PZK A;  4H3Y A;  3OIJ A;  3KW2 A;  4YQ1 A;  1OY5 A;  1Z85 A;  4RG1 A;  4E8B A;  3KY7 A;  3OIN A;  4H3Z A;  4YQC A;  2O3A A;  3QUV A;  4YQ2 A;  4YQA A;  4YQK A;  3KNU A;  4MCD A;  4YQG A;  3ONP A;  4CNG A;  1UAM A;  1ZJR A;  3NK6 A;  3BBD A;  4YQ6 A;  4YQJ A;  4YVI A;  4YQ3 A;  1VH0 A;  4IG6 A;  2QMM A;  1NS5 A;  4YQ7 A;  2CX8 A;  3DCM X;  1P9P A;  2YY8 A;  4J3C A;  1V2X A;  4YQ0 A;  2HA8 A;  1TO0 A;  4XBO A;  3N4K A;  4MCB A;  4YQR A;  4YQ9 A;  4YQT A;  3KTY A;  4FAK A;  4YVG A;  4YQP A;  4YPZ A;  3ILK A;  2EGW A;  4CNF A;  4YQQ A;  1MXI A;  4YQB A;  2V3J A;  1V6Z A;  3BBE A; 
#chains in the Genus database with same CATH topology
 2QWV A;  3AI9 X;  1J85 A;  1VHK A;  1O6D A;  4X3M A;  1K3R A;  4CND A;  3NK7 A;  3L8U A;  1CO0 A;  4JAL A;  2I6D A;  1UAK A;  4YVJ A;  1X7O A;  1MI7 R;  4YPX A;  4YQN A;  5CO4 A;  4CNE A;  4YQ4 A;  4YQO A;  3OII A;  4JAK A;  1IPA A;  5D9F A;  4YQL A;  1GZ0 A;  3SSX N;  4JWF A;  3GYQ A;  3AIA A;  3KOR A;  5GMC A;  3IC6 A;  4X3L A;  1UAJ A;  1TRO A;  4L69 A;  2V3K A;  2EGV A;  4KGN A;  4YQI A;  4YQ5 A;  3SSW N;  1UAL A;  1X7P A;  3E5Y A;  2Z0Y A;  5GM8 A;  4YVH A;  3O7B A;  1JHG A;  4YPW A;  5FAI A;  4KDZ A;  4YPY A;  1ZT9 A;  4JWG A;  1NXZ A;  5GMB A;  3IEF A;  4YQS A;  4MCC A;  4YQD A;  1VHY A;  2OZ9 R;  3AXZ A;  3N4J A;  4YVK A;  1RCS A;  4YQ8 A;  3BBH A;  4PZK A;  4H3Y A;  3OIJ A;  3KW2 A;  4YQ1 A;  1OY5 A;  1WRS R;  1Z85 A;  4RG1 A;  4E8B A;  3KY7 A;  3OIN A;  4H3Z A;  4YQC A;  2O3A A;  3QUV A;  4YQ2 A;  4YQA A;  4YQK A;  3KNU A;  4MCD A;  2XDI A;  4YQG A;  3ONP A;  4CNG A;  3FRW A;  1UAM A;  1ZJR A;  3NK6 A;  3BBD A;  4YQ6 A;  4YQJ A;  4YVI A;  4YQ3 A;  4IG6 A;  1VH0 A;  1TRR A;  2QMM A;  1NS5 A;  4YQ7 A;  2CX8 A;  3DCM X;  1P9P A;  2YY8 A;  4J3C A;  1V2X A;  4YQ0 A;  2HA8 A;  1TO0 A;  4XBO A;  1WRT R;  1WRP R;  3N4K A;  4MCB A;  4YQR A;  4YQ9 A;  4YQT A;  3KTY A;  4FAK A;  4YVG A;  4YQP A;  4YPZ A;  3ILK A;  4FMW A;  3G1C A;  2EGW A;  3WRP A;  4JWJ A;  4CNF A;  4YQQ A;  1MXI A;  4YQB A;  2V3J A;  4JWH A;  1V6Z A;  3BBE A; 
#chains in the Genus database with same CATH homology
 2QWV A;  3AI9 X;  1J85 A;  1VHK A;  1O6D A;  4X3M A;  1K3R A;  4CND A;  3NK7 A;  3L8U A;  4JAL A;  2I6D A;  1UAK A;  4YVJ A;  1X7O A;  4YPX A;  4YQN A;  5CO4 A;  4CNE A;  4YQ4 A;  4YQO A;  3OII A;  4JAK A;  1IPA A;  5D9F A;  4YQL A;  1GZ0 A;  4JWF A;  3GYQ A;  3AIA A;  5GMC A;  3IC6 A;  4X3L A;  1UAJ A;  4L69 A;  2V3K A;  2EGV A;  4KGN A;  4YQI A;  4YQ5 A;  1UAL A;  1X7P A;  3E5Y A;  2Z0Y A;  5GM8 A;  4YVH A;  3O7B A;  4YPW A;  5FAI A;  4KDZ A;  4YPY A;  4JWG A;  1NXZ A;  5GMB A;  3IEF A;  4YQS A;  4MCC A;  4YQD A;  1VHY A;  3AXZ A;  3N4J A;  4YVK A;  4YQ8 A;  3BBH A;  4PZK A;  4H3Y A;  3OIJ A;  3KW2 A;  4YQ1 A;  1OY5 A;  1Z85 A;  4RG1 A;  4E8B A;  3KY7 A;  3OIN A;  4H3Z A;  4YQC A;  2O3A A;  3QUV A;  4YQ2 A;  4YQA A;  4YQK A;  3KNU A;  4MCD A;  4YQG A;  3ONP A;  4CNG A;  1UAM A;  1ZJR A;  3NK6 A;  3BBD A;  4YQ6 A;  4YQJ A;  4YVI A;  4YQ3 A;  1VH0 A;  4IG6 A;  2QMM A;  1NS5 A;  4YQ7 A;  2CX8 A;  3DCM X;  1P9P A;  2YY8 A;  4J3C A;  1V2X A;  4YQ0 A;  2HA8 A;  1TO0 A;  4XBO A;  3N4K A;  4MCB A;  4YQR A;  4YQ9 A;  4YQT A;  3KTY A;  4FAK A;  4YVG A;  4YQP A;  4YPZ A;  3ILK A;  4FMW A;  2EGW A;  4JWJ A;  4CNF A;  4YQQ A;  1MXI A;  4YQB A;  2V3J A;  4JWH A;  1V6Z A;  3BBE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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