1TROA

Crystal structure of trp repressor operator complex at atomic resolution
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
104
structure length
104
Chain Sequence
SPYSAAMAEERHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLLKSD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription/dna
molecule keywords DNA (5'-D(*TP*GP*TP*AP*CP*TP*AP*GP*TP*TP*AP*AP*CP*TP*AP*GP*T
publication title Crystal structure of trp repressor/operator complex at atomic resolution.
pubmed doi rcsb
total genus 39
structure length 104
sequence length 104
chains with identical sequence C, E, G
ec nomenclature
pdb deposition date 1992-08-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01371 Trp_repressor Trp repressor protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.10 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A TrpR-like 1troA00
3KORA 3SSWN 3G1CA 1RCSA 1ZT9A 2XDIA 1WRSR 1WRTR 3SSXN 3WRPA 3FRWA 1TRRA 2OZ9R 1TROA 1MI7R 1CO0A 1JHGA 1WRPR
chains in the Genus database with same CATH superfamily
4YQPA 3AXZA 4IG6A 1ZT9A 3KNUA 4MCDA 1UAKA 4YQSA 4YQOA 3SSXN 4YQ7A 1UAJA 4YVHA 4YQGA 4YQLA 1WRPR 4YQDA 3SSWN 4YQIA 4YQ1A 4YVJA 1OY5A 3G1CA 4YVIA 4YQRA 1WRSR 4YQCA 4H3YA 4H3ZA 4YPWA 1RCSA 4YQAA 1UAMA 4YQ6A 3IEFA 3KORA 4YQ8A 1UALA 4YQKA 4YQNA 1TROA 4MCBA 4YVGA 2XDIA 4YQQA 4YQ2A 3WRPA 3KY7A 3QUVA 1MI7R 1CO0A 1JHGA 4YQ4A 4YPYA 4YQ9A 5D9FA 4YQ5A 1WRTR 4YPZA 4YPXA 4YQ3A 4MCCA 4YQJA 3FRWA 4YQ0A 2OZ9R 4YQTA 4YVKA 1TRRA 1P9PA 4YQBA
chains in the Genus database with same CATH topology
3KORA 3SSWN 3G1CA 1RCSA 1ZT9A 2XDIA 1WRSR 1WRTR 3SSXN 3WRPA 3FRWA 1TRRA 2OZ9R 1TROA 1MI7R 1CO0A 1JHGA 1WRPR
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KOR A;  3SSW N;  3G1C A;  1RCS A;  1ZT9 A;  2XDI A;  1WRS R;  1WRT R;  3SSX N;  3WRP A;  3FRW A;  1TRR A;  2OZ9 R;  1TRO A;  1MI7 R;  1CO0 A;  1JHG A;  1WRP R; 
#chains in the Genus database with same CATH topology
 4YQP A;  3AXZ A;  4IG6 A;  1ZT9 A;  3KNU A;  4MCD A;  1UAK A;  4YQS A;  4YQO A;  3SSX N;  4YQ7 A;  1UAJ A;  4YVH A;  4YQG A;  4YQL A;  1WRP R;  4YQD A;  3SSW N;  4YQI A;  4YQ1 A;  4YVJ A;  1OY5 A;  3G1C A;  4YVI A;  4YQR A;  1WRS R;  4YQC A;  4H3Y A;  4H3Z A;  4YPW A;  1RCS A;  4YQA A;  1UAM A;  4YQ6 A;  3IEF A;  3KOR A;  4YQ8 A;  1UAL A;  4YQK A;  4YQN A;  1TRO A;  4MCB A;  4YVG A;  2XDI A;  4YQQ A;  4YQ2 A;  3WRP A;  3KY7 A;  3QUV A;  1MI7 R;  1CO0 A;  1JHG A;  4YQ4 A;  4YPY A;  4YQ9 A;  5D9F A;  4YQ5 A;  1WRT R;  4YPZ A;  4YPX A;  4YQ3 A;  4MCC A;  4YQJ A;  3FRW A;  4YQ0 A;  2OZ9 R;  4YQT A;  4YVK A;  1TRR A;  1P9P A;  4YQB A; 
#chains in the Genus database with same CATH homology
 3KOR A;  3SSW N;  3G1C A;  1RCS A;  1ZT9 A;  2XDI A;  1WRS R;  1WRT R;  3SSX N;  3WRP A;  3FRW A;  1TRR A;  2OZ9 R;  1TRO A;  1MI7 R;  1CO0 A;  1JHG A;  1WRP R; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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