3SSWN

E. coli trp aporepressor
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
98
structure length
98
Chain Sequence
SAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding protein
source organism Escherichia coli
publication title Environment-dependent long-range structural distortion in a temperature-sensitive point mutant.
pubmed doi rcsb
molecule keywords Trp operon repressor
total genus 36
structure length 98
sequence length 98
chains with identical sequence R
ec nomenclature
pdb deposition date 2011-07-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
N PF01371 Trp_repressor Trp repressor protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.10 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A TrpR-like 3sswN00
2XDIA 1WRPR 3FRWA 3SSXN 1ZT9A 3G1CA 1TRRA 3SSWN 3WRPA 1CO0A 1WRSR 1MI7R 2OZ9R 3KORA 1RCSA 1TROA 1JHGA 1WRTR
chains in the Genus database with same CATH superfamily
4MCBA 4YQ2A 4YQLA 4YQ3A 3FRWA 4H3YA 4H3ZA 4YPWA 3SSWN 3WRPA 4YQAA 1TROA 1MI7R 4YQIA 1UAMA 1P9PA 4YQKA 1UALA 4YVHA 4YPZA 4YQ1A 1OY5A 4YVGA 1ZT9A 3G1CA 4YQQA 4YQTA 4YQPA 1RCSA 4YQ9A 4YQSA 3AXZA 4YQNA 4YVJA 4YVKA 2XDIA 3QUVA 1WRPR 4MCCA 4YQOA 3KNUA 4YQJA 4YPYA 1WRSR 4YQDA 3KY7A 4YQGA 1CO0A 2OZ9R 1JHGA 3IEFA 4YVIA 3SSXN 1UAKA 4YQ8A 1TRRA 5D9FA 1UAJA 4YQ6A 3KORA 4YQ0A 4IG6A 4YQBA 4MCDA 4YPXA 4YQ4A 4YQRA 4YQCA 4YQ5A 4YQ7A 1WRTR
chains in the Genus database with same CATH topology
2XDIA 1WRPR 3FRWA 3SSXN 1ZT9A 3G1CA 1TRRA 3SSWN 3WRPA 1CO0A 1WRSR 1MI7R 2OZ9R 3KORA 1RCSA 1TROA 1JHGA 1WRTR
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XDI A;  1WRP R;  3FRW A;  3SSX N;  1ZT9 A;  3G1C A;  1TRR A;  3SSW N;  3WRP A;  1CO0 A;  1WRS R;  1MI7 R;  2OZ9 R;  3KOR A;  1RCS A;  1TRO A;  1JHG A;  1WRT R; 
#chains in the Genus database with same CATH topology
 4MCB A;  4YQ2 A;  4YQL A;  4YQ3 A;  3FRW A;  4H3Y A;  4H3Z A;  4YPW A;  3SSW N;  3WRP A;  4YQA A;  1TRO A;  1MI7 R;  4YQI A;  1UAM A;  1P9P A;  4YQK A;  1UAL A;  4YVH A;  4YPZ A;  4YQ1 A;  1OY5 A;  4YVG A;  1ZT9 A;  3G1C A;  4YQQ A;  4YQT A;  4YQP A;  1RCS A;  4YQ9 A;  4YQS A;  3AXZ A;  4YQN A;  4YVJ A;  4YVK A;  2XDI A;  3QUV A;  1WRP R;  4MCC A;  4YQO A;  3KNU A;  4YQJ A;  4YPY A;  1WRS R;  4YQD A;  3KY7 A;  4YQG A;  1CO0 A;  2OZ9 R;  1JHG A;  3IEF A;  4YVI A;  3SSX N;  1UAK A;  4YQ8 A;  1TRR A;  5D9F A;  1UAJ A;  4YQ6 A;  3KOR A;  4YQ0 A;  4IG6 A;  4YQB A;  4MCD A;  4YPX A;  4YQ4 A;  4YQR A;  4YQC A;  4YQ5 A;  4YQ7 A;  1WRT R; 
#chains in the Genus database with same CATH homology
 2XDI A;  1WRP R;  3FRW A;  3SSX N;  1ZT9 A;  3G1C A;  1TRR A;  3SSW N;  3WRP A;  1CO0 A;  1WRS R;  1MI7 R;  2OZ9 R;  3KOR A;  1RCS A;  1TRO A;  1JHG A;  1WRT R; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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