3SSWN

E. coli trp aporepressor
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
98
structure length
98
Chain Sequence
SAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding protein
molecule keywords Trp operon repressor
publication title Environment-dependent long-range structural distortion in a temperature-sensitive point mutant.
pubmed doi rcsb
source organism Escherichia coli
total genus 36
structure length 98
sequence length 98
chains with identical sequence R
ec nomenclature
pdb deposition date 2011-07-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
N PF01371 Trp_repressor Trp repressor protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.10 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A TrpR-like 3sswN00
3FRWA 2OZ9R 1ZT9A 1WRPR 1WRTR 3KORA 3SSXN 3WRPA 1RCSA 1JHGA 3SSWN 1TRRA 1CO0A 1WRSR 3G1CA 2XDIA 1MI7R 1TROA
chains in the Genus database with same CATH superfamily
4YQ0A 3FRWA 1WRPR 5D9FA 3SSXN 3WRPA 4YPZA 1TRRA 4YPYA 4YQ6A 3IEFA 4YQOA 1MI7R 4YQ2A 4YQ5A 2OZ9R 4MCCA 1WRTR 3KORA 1OY5A 4YQRA 1RCSA 1JHGA 1UAKA 4YQ7A 4H3ZA 1UAJA 4H3YA 4YQNA 4MCDA 4YQAA 2XDIA 4YVKA 1TROA 4YQDA 4YVJA 3AXZA 4YVHA 4YQ8A 4YPXA 4YQSA 4YQPA 1P9PA 4YQGA 4MCBA 3KY7A 4IG6A 1WRSR 3G1CA 1UAMA 4YPWA 4YQJA 4YQCA 4YQ9A 4YQKA 3QUVA 4YVIA 4YQ1A 1ZT9A 4YVGA 4YQLA 1UALA 4YQIA 4YQBA 4YQTA 4YQ4A 4YQQA 1CO0A 3SSWN 3KNUA 4YQ3A
chains in the Genus database with same CATH topology
3FRWA 2OZ9R 1ZT9A 1WRPR 1WRTR 3KORA 3SSXN 3WRPA 1RCSA 1JHGA 3SSWN 1TRRA 1CO0A 1WRSR 3G1CA 2XDIA 1MI7R 1TROA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FRW A;  2OZ9 R;  1ZT9 A;  1WRP R;  1WRT R;  3KOR A;  3SSX N;  3WRP A;  1RCS A;  1JHG A;  3SSW N;  1TRR A;  1CO0 A;  1WRS R;  3G1C A;  2XDI A;  1MI7 R;  1TRO A; 
#chains in the Genus database with same CATH topology
 4YQ0 A;  3FRW A;  1WRP R;  5D9F A;  3SSX N;  3WRP A;  4YPZ A;  1TRR A;  4YPY A;  4YQ6 A;  3IEF A;  4YQO A;  1MI7 R;  4YQ2 A;  4YQ5 A;  2OZ9 R;  4MCC A;  1WRT R;  3KOR A;  1OY5 A;  4YQR A;  1RCS A;  1JHG A;  1UAK A;  4YQ7 A;  4H3Z A;  1UAJ A;  4H3Y A;  4YQN A;  4MCD A;  4YQA A;  2XDI A;  4YVK A;  1TRO A;  4YQD A;  4YVJ A;  3AXZ A;  4YVH A;  4YQ8 A;  4YPX A;  4YQS A;  4YQP A;  1P9P A;  4YQG A;  4MCB A;  3KY7 A;  4IG6 A;  1WRS R;  3G1C A;  1UAM A;  4YPW A;  4YQJ A;  4YQC A;  4YQ9 A;  4YQK A;  3QUV A;  4YVI A;  4YQ1 A;  1ZT9 A;  4YVG A;  4YQL A;  1UAL A;  4YQI A;  4YQB A;  4YQT A;  4YQ4 A;  4YQQ A;  1CO0 A;  3SSW N;  3KNU A;  4YQ3 A; 
#chains in the Genus database with same CATH homology
 3FRW A;  2OZ9 R;  1ZT9 A;  1WRP R;  1WRT R;  3KOR A;  3SSX N;  3WRP A;  1RCS A;  1JHG A;  3SSW N;  1TRR A;  1CO0 A;  1WRS R;  3G1C A;  2XDI A;  1MI7 R;  1TRO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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