3SSWN

E. coli trp aporepressor
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
98
structure length
98
Chain Sequence
SAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Trp operon repressor
publication title Environment-dependent long-range structural distortion in a temperature-sensitive point mutant.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Dna binding protein
total genus 36
structure length 98
sequence length 98
chains with identical sequence R
ec nomenclature
pdb deposition date 2011-07-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
N PF01371 Trp_repressor Trp repressor protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.10 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A TrpR-like 3sswN00
2OZ9R 1WRTR 1JHGA 1ZT9A 3SSWN 3WRPA 3SSXN 2XDIA 1WRPR 3G1CA 3FRWA 1TROA 1CO0A 1WRSR 1RCSA 3KORA 1TRRA 1MI7R
chains in the Genus database with same CATH superfamily
2OZ9R 4YQJA 4YQKA 4YQRA 1JHGA 4YQAA 4YPWA 4YQ4A 4YQNA 4YQ9A 1UAJA 1RCSA 4YQ1A 4YPZA 3KNUA 4YQQA 4YPYA 1UAMA 1WRTR 1ZT9A 4YQ6A 1OY5A 1WRPR 3G1CA 3FRWA 4H3ZA 4YQCA 4YQTA 1CO0A 1TRRA 4YQ8A 4YQBA 4YPXA 4MCCA 4YQPA 4YQ7A 4YQ2A 4MCBA 4YQIA 2XDIA 4YVGA 1UALA 3IEFA 4YVIA 4YVHA 4YQGA 3KORA 4YQ0A 4H3YA 5D9FA 1MI7R 3AXZA 4YQLA 4YQSA 1P9PA 4YQDA 4IG6A 3SSWN 3SSXN 3WRPA 4YVKA 4YQ5A 1WRSR 1UAKA 4MCDA 3KY7A 3QUVA 4YVJA 4YQ3A 4YQOA 1TROA
chains in the Genus database with same CATH topology
2OZ9R 1WRTR 1JHGA 1ZT9A 3SSWN 3WRPA 3SSXN 2XDIA 1WRPR 3G1CA 3FRWA 1TROA 1CO0A 1WRSR 1RCSA 3KORA 1TRRA 1MI7R
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OZ9 R;  1WRT R;  1JHG A;  1ZT9 A;  3SSW N;  3WRP A;  3SSX N;  2XDI A;  1WRP R;  3G1C A;  3FRW A;  1TRO A;  1CO0 A;  1WRS R;  1RCS A;  3KOR A;  1TRR A;  1MI7 R; 
#chains in the Genus database with same CATH topology
 2OZ9 R;  4YQJ A;  4YQK A;  4YQR A;  1JHG A;  4YQA A;  4YPW A;  4YQ4 A;  4YQN A;  4YQ9 A;  1UAJ A;  1RCS A;  4YQ1 A;  4YPZ A;  3KNU A;  4YQQ A;  4YPY A;  1UAM A;  1WRT R;  1ZT9 A;  4YQ6 A;  1OY5 A;  1WRP R;  3G1C A;  3FRW A;  4H3Z A;  4YQC A;  4YQT A;  1CO0 A;  1TRR A;  4YQ8 A;  4YQB A;  4YPX A;  4MCC A;  4YQP A;  4YQ7 A;  4YQ2 A;  4MCB A;  4YQI A;  2XDI A;  4YVG A;  1UAL A;  3IEF A;  4YVI A;  4YVH A;  4YQG A;  3KOR A;  4YQ0 A;  4H3Y A;  5D9F A;  1MI7 R;  3AXZ A;  4YQL A;  4YQS A;  1P9P A;  4YQD A;  4IG6 A;  3SSW N;  3SSX N;  3WRP A;  4YVK A;  4YQ5 A;  1WRS R;  1UAK A;  4MCD A;  3KY7 A;  3QUV A;  4YVJ A;  4YQ3 A;  4YQO A;  1TRO A; 
#chains in the Genus database with same CATH homology
 2OZ9 R;  1WRT R;  1JHG A;  1ZT9 A;  3SSW N;  3WRP A;  3SSX N;  2XDI A;  1WRP R;  3G1C A;  3FRW A;  1TRO A;  1CO0 A;  1WRS R;  1RCS A;  3KOR A;  1TRR A;  1MI7 R; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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