1UAKA

Crystal structure of trna(m1g37)methyltransferase: insight into trna recognition
Total Genus 71
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
71
Knots found
sequence length
252
structure length
243
Chain Sequence
SHMWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVLSFADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLALTDEQRKLLKEAQAEHNSLEHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords tRNA (Guanine-N(1)-)-methyltransferase
publication title Crystal structure of tRNA(m(1)G37)methyltransferase: insights into tRNA recognition
pubmed doi rcsb
source organism Haemophilus influenzae
total genus 71
structure length 243
sequence length 252
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.228: tRNA (guanine(37)-N(1))-methyltransferase.
pdb deposition date 2003-03-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01746 tRNA_m1G_MT tRNA (Guanine-1)-methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.20 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A tRNA(m1g37)methyltransferase, domain 2 1uakA02
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 1uakA01
4YQAA 4YVKA 5GM8A 4YQ4A 2V3KA 3KTYA 4YQ1A 1NS5A 4CNFA 3O7BA 1OY5A 1O6DA 4JALA 4YQOA 4CNGA 4YQ8A 4YVIA 4L69A 2EGWA 2QWVA 1UAKA 1V2XA 4CNDA 3OIJA 3AIAA 3AXZA 3IEFA 3AI9X 3N4KA 4MCBA 4E8BA 3DCMX 1VHKA 4MCDA 4CNEA 4YQ6A 4RG1A 4MCCA 4YQQA 4YQJA 4J3CA 1UALA 3BBHA 4PZKA 1MXIA 4YQSA 1V6ZA 2V3JA 4YQBA 4YQCA 1TO0A 3ILKA 4JAKA 3BBDA 4YQTA 1P9PA 5FAIA 1GZ0A 1ZJRA 1X7PA 4YQLA 3L8UA 2QMMA 4YPWA 4YQPA 4IG6A 4YPYA 2YY8A 4YQIA 5GMCA 3OINA 4YQNA 4YQKA 4YVHA 4YPXA 4FAKA 3KY7A 2I6DA 4YQDA 4YQGA 2CX8A 4YQ0A 1NXZA 4XBOA 4KGNA 4YPZA 1K3RA 1UAMA 1IPAA 2O3AA 4YVGA 1X7OA 4H3YA 4YQ7A 4YVJA 1VHYA 3QUVA 3GYQA 3KNUA 3KW2A 3ONPA 4X3LA 4YQ2A 1Z85A 2Z0YA 1J85A 2HA8A 4YQ3A 4KDZA 4YQ5A 1UAJA 5D9FA 3NK7A 4X3MA 2EGVA 4H3ZA 4YQRA 5CO4A 3IC6A 4YQ9A 3N4JA 3NK6A 5GMBA 1VH0A 3OIIA 3BBEA 3E5YA
chains in the Genus database with same CATH superfamily
4YQAA 4YVKA 1TRRA 5GM8A 4YQ4A 1WRPR 2V3KA 3KTYA 4YQ1A 1NS5A 4CNFA 3O7BA 1OY5A 1O6DA 4JALA 4YQOA 4CNGA 4YQ8A 4YVIA 4L69A 3G1CA 2EGWA 2QWVA 1UAKA 1V2XA 4JWJA 4CNDA 3OIJA 3AIAA 3AXZA 3IEFA 3AI9X 3N4KA 4MCBA 4E8BA 3DCMX 4MCDA 1VHKA 4CNEA 4YQ6A 4RG1A 4MCCA 4YQQA 4YQJA 4J3CA 1UALA 3BBHA 1TROA 4PZKA 1MXIA 4YQSA 1WRSR 1V6ZA 2V3JA 1ZT9A 4YQBA 4YQCA 1TO0A 3ILKA 4JAKA 3SSWN 4YQTA 3BBDA 1P9PA 3KORA 1MI7R 5FAIA 1GZ0A 1ZJRA 1X7PA 4YQLA 3L8UA 2QMMA 4YPWA 1CO0A 4YQPA 4IG6A 1WRTR 4YPYA 2YY8A 4YQIA 5GMCA 3OINA 4YQNA 4YQKA 4YVHA 4YPXA 4FAKA 3KY7A 2I6DA 4YQDA 4YQGA 2CX8A 4JWHA 4YQ0A 1NXZA 4XBOA 4KGNA 2OZ9R 4YPZA 4JWFA 2XDIA 1K3RA 1UAMA 1IPAA 2O3AA 4YVGA 1X7OA 4H3YA 4YQ7A 3SSXN 4YVJA 1VHYA 3WRPA 3QUVA 1JHGA 3KNUA 3GYQA 3KW2A 3ONPA 4X3LA 4YQ2A 1Z85A 2Z0YA 1J85A 2HA8A 4YQ3A 4KDZA 4JWGA 4YQ5A 1UAJA 5D9FA 4FMWA 3NK7A 4X3MA 2EGVA 4H3ZA 4YQRA 5CO4A 3IC6A 4YQ9A 1RCSA 3N4JA 3NK6A 5GMBA 1VH0A 3OIIA 3BBEA 3E5YA 3FRWA
chains in the Genus database with same CATH topology
4YQAA 4YVKA 5GM8A 4YQ4A 2V3KA 3KTYA 4YQ1A 1NS5A 4CNFA 3O7BA 1OY5A 1O6DA 4JALA 4YQOA 4CNGA 4YQ8A 4YVIA 4L69A 2EGWA 2QWVA 1UAKA 1V2XA 4JWJA 4CNDA 3OIJA 3AIAA 3AXZA 3IEFA 3AI9X 3N4KA 4MCBA 4E8BA 3DCMX 1VHKA 4MCDA 4CNEA 4YQ6A 4RG1A 4MCCA 4YQQA 4YQJA 4J3CA 1UALA 3BBHA 4PZKA 1MXIA 4YQSA 1V6ZA 2V3JA 4YQBA 4YQCA 1TO0A 3ILKA 4JAKA 3BBDA 4YQTA 1P9PA 5FAIA 1GZ0A 1ZJRA 1X7PA 4YQLA 3L8UA 2QMMA 4YPWA 4YQPA 4IG6A 4YPYA 2YY8A 4YQIA 5GMCA 3OINA 4YQNA 4YQKA 4YVHA 4YPXA 4FAKA 3KY7A 2I6DA 4YQDA 4YQGA 2CX8A 4JWHA 4YQ0A 1NXZA 4XBOA 4KGNA 4YPZA 4JWFA 1K3RA 1UAMA 1IPAA 2O3AA 4YVGA 1X7OA 4H3YA 4YQ7A 4YVJA 1VHYA 3QUVA 3GYQA 3KNUA 3KW2A 3ONPA 4X3LA 4YQ2A 1Z85A 2Z0YA 1J85A 2HA8A 4YQ3A 4KDZA 4JWGA 4YQ5A 1UAJA 5D9FA 4FMWA 3NK7A 4X3MA 2EGVA 4H3ZA 4YQRA 5CO4A 3IC6A 4YQ9A 3N4JA 3NK6A 5GMBA 1VH0A 3OIIA 3BBEA 3E5YA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YQA A;  4YVK A;  5GM8 A;  4YQ4 A;  2V3K A;  3KTY A;  4YQ1 A;  1NS5 A;  4CNF A;  3O7B A;  1OY5 A;  1O6D A;  4JAL A;  4YQO A;  4CNG A;  4YQ8 A;  4YVI A;  4L69 A;  2EGW A;  2QWV A;  1UAK A;  1V2X A;  4CND A;  3OIJ A;  3AIA A;  3AXZ A;  3IEF A;  3AI9 X;  3N4K A;  4MCB A;  4E8B A;  3DCM X;  1VHK A;  4MCD A;  4CNE A;  4YQ6 A;  4RG1 A;  4MCC A;  4YQQ A;  4YQJ A;  4J3C A;  1UAL A;  3BBH A;  4PZK A;  1MXI A;  4YQS A;  1V6Z A;  2V3J A;  4YQB A;  4YQC A;  1TO0 A;  3ILK A;  4JAK A;  3BBD A;  4YQT A;  1P9P A;  5FAI A;  1GZ0 A;  1ZJR A;  1X7P A;  4YQL A;  3L8U A;  2QMM A;  4YPW A;  4YQP A;  4IG6 A;  4YPY A;  2YY8 A;  4YQI A;  5GMC A;  3OIN A;  4YQN A;  4YQK A;  4YVH A;  4YPX A;  4FAK A;  3KY7 A;  2I6D A;  4YQD A;  4YQG A;  2CX8 A;  4YQ0 A;  1NXZ A;  4XBO A;  4KGN A;  4YPZ A;  1K3R A;  1UAM A;  1IPA A;  2O3A A;  4YVG A;  1X7O A;  4H3Y A;  4YQ7 A;  4YVJ A;  1VHY A;  3QUV A;  3GYQ A;  3KNU A;  3KW2 A;  3ONP A;  4X3L A;  4YQ2 A;  1Z85 A;  2Z0Y A;  1J85 A;  2HA8 A;  4YQ3 A;  4KDZ A;  4YQ5 A;  1UAJ A;  5D9F A;  3NK7 A;  4X3M A;  2EGV A;  4H3Z A;  4YQR A;  5CO4 A;  3IC6 A;  4YQ9 A;  3N4J A;  3NK6 A;  5GMB A;  1VH0 A;  3OII A;  3BBE A;  3E5Y A; 
#chains in the Genus database with same CATH topology
 4YQA A;  4YVK A;  1TRR A;  5GM8 A;  4YQ4 A;  1WRP R;  2V3K A;  3KTY A;  4YQ1 A;  1NS5 A;  4CNF A;  3O7B A;  1OY5 A;  1O6D A;  4JAL A;  4YQO A;  4CNG A;  4YQ8 A;  4YVI A;  4L69 A;  3G1C A;  2EGW A;  2QWV A;  1UAK A;  1V2X A;  4JWJ A;  4CND A;  3OIJ A;  3AIA A;  3AXZ A;  3IEF A;  3AI9 X;  3N4K A;  4MCB A;  4E8B A;  3DCM X;  4MCD A;  1VHK A;  4CNE A;  4YQ6 A;  4RG1 A;  4MCC A;  4YQQ A;  4YQJ A;  4J3C A;  1UAL A;  3BBH A;  1TRO A;  4PZK A;  1MXI A;  4YQS A;  1WRS R;  1V6Z A;  2V3J A;  1ZT9 A;  4YQB A;  4YQC A;  1TO0 A;  3ILK A;  4JAK A;  3SSW N;  4YQT A;  3BBD A;  1P9P A;  3KOR A;  1MI7 R;  5FAI A;  1GZ0 A;  1ZJR A;  1X7P A;  4YQL A;  3L8U A;  2QMM A;  4YPW A;  1CO0 A;  4YQP A;  4IG6 A;  1WRT R;  4YPY A;  2YY8 A;  4YQI A;  5GMC A;  3OIN A;  4YQN A;  4YQK A;  4YVH A;  4YPX A;  4FAK A;  3KY7 A;  2I6D A;  4YQD A;  4YQG A;  2CX8 A;  4JWH A;  4YQ0 A;  1NXZ A;  4XBO A;  4KGN A;  2OZ9 R;  4YPZ A;  4JWF A;  2XDI A;  1K3R A;  1UAM A;  1IPA A;  2O3A A;  4YVG A;  1X7O A;  4H3Y A;  4YQ7 A;  3SSX N;  4YVJ A;  1VHY A;  3WRP A;  3QUV A;  1JHG A;  3KNU A;  3GYQ A;  3KW2 A;  3ONP A;  4X3L A;  4YQ2 A;  1Z85 A;  2Z0Y A;  1J85 A;  2HA8 A;  4YQ3 A;  4KDZ A;  4JWG A;  4YQ5 A;  1UAJ A;  5D9F A;  4FMW A;  3NK7 A;  4X3M A;  2EGV A;  4H3Z A;  4YQR A;  5CO4 A;  3IC6 A;  4YQ9 A;  1RCS A;  3N4J A;  3NK6 A;  5GMB A;  1VH0 A;  3OII A;  3BBE A;  3E5Y A;  3FRW A; 
#chains in the Genus database with same CATH homology
 4YQA A;  4YVK A;  5GM8 A;  4YQ4 A;  2V3K A;  3KTY A;  4YQ1 A;  1NS5 A;  4CNF A;  3O7B A;  1OY5 A;  1O6D A;  4JAL A;  4YQO A;  4CNG A;  4YQ8 A;  4YVI A;  4L69 A;  2EGW A;  2QWV A;  1UAK A;  1V2X A;  4JWJ A;  4CND A;  3OIJ A;  3AIA A;  3AXZ A;  3IEF A;  3AI9 X;  3N4K A;  4MCB A;  4E8B A;  3DCM X;  1VHK A;  4MCD A;  4CNE A;  4YQ6 A;  4RG1 A;  4MCC A;  4YQQ A;  4YQJ A;  4J3C A;  1UAL A;  3BBH A;  4PZK A;  1MXI A;  4YQS A;  1V6Z A;  2V3J A;  4YQB A;  4YQC A;  1TO0 A;  3ILK A;  4JAK A;  3BBD A;  4YQT A;  1P9P A;  5FAI A;  1GZ0 A;  1ZJR A;  1X7P A;  4YQL A;  3L8U A;  2QMM A;  4YPW A;  4YQP A;  4IG6 A;  4YPY A;  2YY8 A;  4YQI A;  5GMC A;  3OIN A;  4YQN A;  4YQK A;  4YVH A;  4YPX A;  4FAK A;  3KY7 A;  2I6D A;  4YQD A;  4YQG A;  2CX8 A;  4JWH A;  4YQ0 A;  1NXZ A;  4XBO A;  4KGN A;  4YPZ A;  4JWF A;  1K3R A;  1UAM A;  1IPA A;  2O3A A;  4YVG A;  1X7O A;  4H3Y A;  4YQ7 A;  4YVJ A;  1VHY A;  3QUV A;  3GYQ A;  3KNU A;  3KW2 A;  3ONP A;  4X3L A;  4YQ2 A;  1Z85 A;  2Z0Y A;  1J85 A;  2HA8 A;  4YQ3 A;  4KDZ A;  4JWG A;  4YQ5 A;  1UAJ A;  5D9F A;  4FMW A;  3NK7 A;  4X3M A;  2EGV A;  4H3Z A;  4YQR A;  5CO4 A;  3IC6 A;  4YQ9 A;  3N4J A;  3NK6 A;  5GMB A;  1VH0 A;  3OII A;  3BBE A;  3E5Y A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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