1WRSR

Nmr study of holo trp repressor
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
104
structure length
104
Chain Sequence
QSPYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLLKS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords HOLO TRP REPRESSOR
publication title Refined solution structures of the Escherichia coli trp holo- and aporepressor.
pubmed doi rcsb
molecule tags Complex (operon repressor/peptide)
total genus 18
structure length 104
sequence length 104
chains with identical sequence S
ec nomenclature
pdb deposition date 1995-05-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
R PF01371 Trp_repressor Trp repressor protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.10 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A TrpR-like 1wrsR00
1MI7R 3KORA 2XDIA 1TROA 1TRRA 1WRSR 3FRWA 1ZT9A 3WRPA 1WRTR 1RCSA 1CO0A 3G1CA 3SSXN 1JHGA 3SSWN 1WRPR 2OZ9R
chains in the Genus database with same CATH superfamily
4YQOA 4YVJA 1MI7R 4YQKA 2XDIA 4IG6A 4MCCA 4H3YA 1TRRA 4YQDA 1WRSR 4YQ3A 4YQLA 4YPZA 1UALA 4YQ1A 1P9PA 4YQRA 4YQPA 3IEFA 3G1CA 4YQ0A 1JHGA 1RCSA 4MCDA 4YQTA 1TROA 4YQ9A 3FRWA 3KNUA 4YQSA 4YQJA 1ZT9A 4YQ6A 4YQ4A 4YVKA 4YQBA 1WRTR 4YQ5A 4YPYA 2OZ9R 1UAMA 4YQ8A 4YQAA 3KORA 4YQ7A 4YQCA 4YQIA 3WRPA 1OY5A 1CO0A 4YQQA 4YQ2A 3SSXN 3SSWN 4YVHA 4MCBA 4YQNA 3KY7A 4YPXA 4H3ZA 4YPWA 5D9FA 1UAJA 4YQGA 4YVGA 4YVIA 3QUVA 1UAKA 3AXZA 1WRPR
chains in the Genus database with same CATH topology
1MI7R 3KORA 2XDIA 1TROA 1TRRA 1WRSR 3FRWA 1ZT9A 3WRPA 1WRTR 1RCSA 1CO0A 3G1CA 3SSXN 1JHGA 3SSWN 1WRPR 2OZ9R
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MI7 R;  3KOR A;  2XDI A;  1TRO A;  1TRR A;  1WRS R;  3FRW A;  1ZT9 A;  3WRP A;  1WRT R;  1RCS A;  1CO0 A;  3G1C A;  3SSX N;  1JHG A;  3SSW N;  1WRP R;  2OZ9 R; 
#chains in the Genus database with same CATH topology
 4YQO A;  4YVJ A;  1MI7 R;  4YQK A;  2XDI A;  4IG6 A;  4MCC A;  4H3Y A;  1TRR A;  4YQD A;  1WRS R;  4YQ3 A;  4YQL A;  4YPZ A;  1UAL A;  4YQ1 A;  1P9P A;  4YQR A;  4YQP A;  3IEF A;  3G1C A;  4YQ0 A;  1JHG A;  1RCS A;  4MCD A;  4YQT A;  1TRO A;  4YQ9 A;  3FRW A;  3KNU A;  4YQS A;  4YQJ A;  1ZT9 A;  4YQ6 A;  4YQ4 A;  4YVK A;  4YQB A;  1WRT R;  4YQ5 A;  4YPY A;  2OZ9 R;  1UAM A;  4YQ8 A;  4YQA A;  3KOR A;  4YQ7 A;  4YQC A;  4YQI A;  3WRP A;  1OY5 A;  1CO0 A;  4YQQ A;  4YQ2 A;  3SSX N;  3SSW N;  4YVH A;  4MCB A;  4YQN A;  3KY7 A;  4YPX A;  4H3Z A;  4YPW A;  5D9F A;  1UAJ A;  4YQG A;  4YVG A;  4YVI A;  3QUV A;  1UAK A;  3AXZ A;  1WRP R; 
#chains in the Genus database with same CATH homology
 1MI7 R;  3KOR A;  2XDI A;  1TRO A;  1TRR A;  1WRS R;  3FRW A;  1ZT9 A;  3WRP A;  1WRT R;  1RCS A;  1CO0 A;  3G1C A;  3SSX N;  1JHG A;  3SSW N;  1WRP R;  2OZ9 R; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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