2OZ9R

E. coli trp holorepressor, orthorhombic crystal form
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
104
structure length
104
Chain Sequence
SPYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLLKSD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Flexibility of the DNA-binding domains of trp repressor.
pubmed doi rcsb
molecule keywords Trp operon repressor
molecule tags Dna binding protein
source organism Escherichia coli
total genus 35
structure length 104
sequence length 104
ec nomenclature
pdb deposition date 2007-02-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
R PF01371 Trp_repressor Trp repressor protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.10 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A TrpR-like 2oz9R00
1WRSR 1JHGA 1TRRA 3KORA 2OZ9R 1MI7R 1ZT9A 3FRWA 2XDIA 3WRPA 1RCSA 3SSWN 3SSXN 3G1CA 1WRTR 1WRPR 1CO0A 1TROA
chains in the Genus database with same CATH superfamily
1OY5A 3KY7A 4YQ6A 4YPZA 1MI7R 1ZT9A 4H3YA 2XDIA 4H3ZA 4YPWA 3IEFA 1UAMA 4YQ0A 4YPXA 3AXZA 4YQLA 4YQOA 4YQAA 1CO0A 1TROA 4YQNA 4YQ2A 1WRSR 1JHGA 1TRRA 4MCCA 4YQ1A 2OZ9R 4YQSA 3FRWA 4YQPA 3SSWN 3G1CA 4YQDA 4YQ3A 1UAKA 4YVJA 4YQ9A 4YQ4A 4YVIA 3SSXN 1RCSA 3KORA 3WRPA 4YQ7A 4YQ8A 1UALA 4MCBA 4YQBA 4YQKA 4YQTA 1UAJA 4YVKA 5D9FA 4YQGA 4YVGA 4YQJA 4YQRA 3QUVA 4YQQA 4YQ5A 1P9PA 4IG6A 4YPYA 3KNUA 1WRTR 4YQIA 1WRPR 4YVHA 4YQCA 4MCDA
chains in the Genus database with same CATH topology
1WRSR 1JHGA 1TRRA 3KORA 2OZ9R 1MI7R 1ZT9A 3FRWA 2XDIA 3WRPA 1RCSA 3SSWN 3SSXN 3G1CA 1WRTR 1WRPR 1CO0A 1TROA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WRS R;  1JHG A;  1TRR A;  3KOR A;  2OZ9 R;  1MI7 R;  1ZT9 A;  3FRW A;  2XDI A;  3WRP A;  1RCS A;  3SSW N;  3SSX N;  3G1C A;  1WRT R;  1WRP R;  1CO0 A;  1TRO A; 
#chains in the Genus database with same CATH topology
 1OY5 A;  3KY7 A;  4YQ6 A;  4YPZ A;  1MI7 R;  1ZT9 A;  4H3Y A;  2XDI A;  4H3Z A;  4YPW A;  3IEF A;  1UAM A;  4YQ0 A;  4YPX A;  3AXZ A;  4YQL A;  4YQO A;  4YQA A;  1CO0 A;  1TRO A;  4YQN A;  4YQ2 A;  1WRS R;  1JHG A;  1TRR A;  4MCC A;  4YQ1 A;  2OZ9 R;  4YQS A;  3FRW A;  4YQP A;  3SSW N;  3G1C A;  4YQD A;  4YQ3 A;  1UAK A;  4YVJ A;  4YQ9 A;  4YQ4 A;  4YVI A;  3SSX N;  1RCS A;  3KOR A;  3WRP A;  4YQ7 A;  4YQ8 A;  1UAL A;  4MCB A;  4YQB A;  4YQK A;  4YQT A;  1UAJ A;  4YVK A;  5D9F A;  4YQG A;  4YVG A;  4YQJ A;  4YQR A;  3QUV A;  4YQQ A;  4YQ5 A;  1P9P A;  4IG6 A;  4YPY A;  3KNU A;  1WRT R;  4YQI A;  1WRP R;  4YVH A;  4YQC A;  4MCD A; 
#chains in the Genus database with same CATH homology
 1WRS R;  1JHG A;  1TRR A;  3KOR A;  2OZ9 R;  1MI7 R;  1ZT9 A;  3FRW A;  2XDI A;  3WRP A;  1RCS A;  3SSW N;  3SSX N;  3G1C A;  1WRT R;  1WRP R;  1CO0 A;  1TRO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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