1ZT9A

E. coli trp repressor, tetragonal crystal form
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
101
structure length
101
Chain Sequence
SPYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Trp operon repressor
publication title Two association modes for E. coli trp repressor dimer-dimer interactions
rcsb
source organism Escherichia coli
molecule tags Transcription
total genus 38
structure length 101
sequence length 101
chains with identical sequence B, D, E
ec nomenclature
pdb deposition date 2005-05-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01371 Trp_repressor Trp repressor protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.10 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A TrpR-like 1zt9A00
1TRRA 3FRWA 1CO0A 3SSWN 3G1CA 3KORA 1TROA 1WRTR 2XDIA 3SSXN 1MI7R 1JHGA 3WRPA 2OZ9R 1WRPR 1WRSR 1RCSA 1ZT9A
chains in the Genus database with same CATH superfamily
3QUVA 4YPZA 4YQOA 3SSWN 3G1CA 4YQ0A 4YQLA 1WRTR 3IEFA 4IG6A 5D9FA 1TROA 3KY7A 3KNUA 4YQIA 4YPXA 4YQPA 4YVHA 4YQSA 4YQDA 1ZT9A 4YQJA 4YQ4A 4YQ2A 1UAJA 1CO0A 4YQRA 1UAKA 3KORA 4MCDA 3SSXN 4YQ3A 4YQNA 4YQTA 2OZ9R 1WRSR 4YQBA 4MCCA 3FRWA 4YPWA 1TRRA 4MCBA 4YQ8A 4YQKA 4YQAA 2XDIA 1MI7R 4YQ1A 3WRPA 1WRPR 4YQ7A 1RCSA 1UALA 1UAMA 4YVGA 4YQ9A 3AXZA 4YQ5A 4YQ6A 4YPYA 4YQQA 4YQCA 4YVKA 4YVIA 4YQGA 1JHGA 4H3YA 4YVJA 1OY5A 4H3ZA 1P9PA
chains in the Genus database with same CATH topology
1TRRA 3FRWA 1CO0A 3SSWN 3G1CA 3KORA 1TROA 1WRTR 2XDIA 3SSXN 1MI7R 1JHGA 3WRPA 2OZ9R 1WRPR 1WRSR 1RCSA 1ZT9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TRR A;  3FRW A;  1CO0 A;  3SSW N;  3G1C A;  3KOR A;  1TRO A;  1WRT R;  2XDI A;  3SSX N;  1MI7 R;  1JHG A;  3WRP A;  2OZ9 R;  1WRP R;  1WRS R;  1RCS A;  1ZT9 A; 
#chains in the Genus database with same CATH topology
 3QUV A;  4YPZ A;  4YQO A;  3SSW N;  3G1C A;  4YQ0 A;  4YQL A;  1WRT R;  3IEF A;  4IG6 A;  5D9F A;  1TRO A;  3KY7 A;  3KNU A;  4YQI A;  4YPX A;  4YQP A;  4YVH A;  4YQS A;  4YQD A;  1ZT9 A;  4YQJ A;  4YQ4 A;  4YQ2 A;  1UAJ A;  1CO0 A;  4YQR A;  1UAK A;  3KOR A;  4MCD A;  3SSX N;  4YQ3 A;  4YQN A;  4YQT A;  2OZ9 R;  1WRS R;  4YQB A;  4MCC A;  3FRW A;  4YPW A;  1TRR A;  4MCB A;  4YQ8 A;  4YQK A;  4YQA A;  2XDI A;  1MI7 R;  4YQ1 A;  3WRP A;  1WRP R;  4YQ7 A;  1RCS A;  1UAL A;  1UAM A;  4YVG A;  4YQ9 A;  3AXZ A;  4YQ5 A;  4YQ6 A;  4YPY A;  4YQQ A;  4YQC A;  4YVK A;  4YVI A;  4YQG A;  1JHG A;  4H3Y A;  4YVJ A;  1OY5 A;  4H3Z A;  1P9P A; 
#chains in the Genus database with same CATH homology
 1TRR A;  3FRW A;  1CO0 A;  3SSW N;  3G1C A;  3KOR A;  1TRO A;  1WRT R;  2XDI A;  3SSX N;  1MI7 R;  1JHG A;  3WRP A;  2OZ9 R;  1WRP R;  1WRS R;  1RCS A;  1ZT9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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