4YQLA

Crystal structure of trmd, a m1g37 trna methyltransferase with sam-competitive compounds
Total Genus 69
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
69
sequence length
248
structure length
240
Chain Sequence
GSHMWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVLGSFADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLALTDEQRKLLKEAQAEHN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Transferase/transferase inhibitor
source organism Haemophilus influenzae (strain atcc 51907 / dsm 11121 / kw20 / rd)
publication title Crystal structure of TrmD, a M1G37 tRNA Methyltransferase with SAM-competitive compounds
rcsb
molecule keywords tRNA (guanine-N(1)-)-methyltransferase
total genus 69
structure length 240
sequence length 248
ec nomenclature ec 2.1.1.228: tRNA (guanine(37)-N(1))-methyltransferase.
pdb deposition date 2015-03-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01746 tRNA_m1G_MT tRNA (Guanine-1)-methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.20 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A tRNA(m1g37)methyltransferase, domain 2 4yqlA02
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 4yqlA01
1X7OA 4YQPA 1TO0A 3IC6A 1UAJA 3AI9X 4CNGA 1P9PA 2Z0YA 1V6ZA 4YQLA 2QMMA 4YVHA 2YY8A 2EGWA 4MCBA 4PZKA 1NXZA 4YQAA 2CX8A 4YQKA 3DCMX 4X3MA 3KNUA 2EGVA 1K3RA 1X7PA 2I6DA 3KY7A 3GYQA 4YQRA 5GMBA 4YVGA 1UAMA 1OY5A 3N4JA 4YQDA 4YQIA 3QUVA 2O3AA 4MCDA 1J85A 2QWVA 4H3ZA 4YQQA 4RG1A 4X3LA 4YQJA 4KDZA 1ZJRA 4CNEA 4CNDA 5GMCA 1VHYA 4KGNA 1GZ0A 4YQ7A 5CO4A 2V3JA 4YVKA 4YQ3A 4MCCA 3N4KA 4E8BA 4YQTA 3BBHA 3E5YA 1UAKA 1VHKA 1IPAA 3L8UA 4YQSA 4H3YA 4YQ6A 4J3CA 3AIAA 3KW2A 5FAIA 4FAKA 3NK6A 3ILKA 4YQOA 4YQCA 4YVIA 4YQ2A 3KTYA 1NS5A 4JAKA 1V2XA 4YVJA 2V3KA 1UALA 3ONPA 3BBDA 3OIJA 3NK7A 3OINA 4YPZA 4YQ4A 1Z85A 4YQ5A 4L69A 4YQ0A 4CNFA 4YQBA 4YQ8A 4YQ1A 1O6DA 4YQNA 1MXIA 4YQ9A 5GM8A 1VH0A 4YPXA 2HA8A 3BBEA 3OIIA 4YPWA 4JALA 4YQGA 3O7BA 4YPYA 5D9FA 3AXZA 3IEFA 4XBOA 4IG6A
chains in the Genus database with same CATH superfamily
4JWJA 1X7OA 4YQPA 1TO0A 1MI7R 3IC6A 1UAJA 3AI9X 4CNGA 1P9PA 2Z0YA 1V6ZA 4YQLA 3SSXN 1JHGA 4YVHA 2QMMA 2YY8A 2EGWA 4MCBA 4PZKA 1NXZA 4FMWA 3G1CA 4YQAA 2CX8A 4YQKA 3SSWN 3DCMX 4X3MA 3KNUA 2EGVA 1K3RA 1X7PA 2I6DA 3KY7A 3GYQA 4YQRA 5GMBA 4YVGA 1UAMA 1OY5A 3N4JA 4YQDA 4YQIA 3QUVA 2O3AA 1CO0A 4MCDA 1J85A 2QWVA 4H3ZA 4YQQA 4RG1A 4X3LA 4YQJA 4KDZA 1ZJRA 4CNEA 4CNDA 5GMCA 4JWHA 1VHYA 4KGNA 1GZ0A 4YQ7A 5CO4A 2V3JA 4YVKA 4YQ3A 4MCCA 3N4KA 4E8BA 4YQTA 3BBHA 1TROA 3E5YA 1UAKA 1VHKA 1IPAA 3L8UA 4YQSA 4H3YA 4YQ6A 4J3CA 3AIAA 3KW2A 5FAIA 4FAKA 1ZT9A 3NK6A 3ILKA 4YQOA 4YQCA 4YVIA 2XDIA 4YQ2A 3KTYA 1TRRA 1NS5A 4JAKA 1RCSA 1V2XA 1WRTR 4YVJA 2V3KA 1UALA 3ONPA 3BBDA 3OIJA 3NK7A 3OINA 4YPZA 4YQ4A 1Z85A 4YQ5A 4L69A 4YQ0A 1WRSR 2OZ9R 4CNFA 4YQBA 4YQ8A 4YQ1A 1O6DA 3KORA 3WRPA 4YQNA 3FRWA 1MXIA 4YQ9A 5GM8A 1WRPR 1VH0A 4JWFA 4YPXA 4JWGA 2HA8A 3BBEA 3OIIA 4YPWA 4JALA 4YQGA 3O7BA 4YPYA 5D9FA 3AXZA 3IEFA 4XBOA 4IG6A
chains in the Genus database with same CATH topology
4JWJA 1X7OA 4YQPA 1TO0A 3IC6A 1UAJA 3AI9X 4CNGA 1P9PA 2Z0YA 1V6ZA 4YQLA 2QMMA 4YVHA 2YY8A 2EGWA 4MCBA 4PZKA 1NXZA 4FMWA 4YQAA 2CX8A 4YQKA 3DCMX 4X3MA 3KNUA 2EGVA 1K3RA 1X7PA 2I6DA 3KY7A 3GYQA 4YQRA 5GMBA 4YVGA 1UAMA 1OY5A 3N4JA 4YQDA 4YQIA 3QUVA 2O3AA 4MCDA 1J85A 2QWVA 4H3ZA 4YQQA 4RG1A 4X3LA 4YQJA 4KDZA 1ZJRA 4CNEA 4CNDA 5GMCA 4JWHA 1VHYA 4KGNA 1GZ0A 4YQ7A 5CO4A 2V3JA 4YVKA 4YQ3A 4MCCA 3N4KA 4E8BA 4YQTA 3BBHA 3E5YA 1UAKA 1VHKA 1IPAA 3L8UA 4YQSA 4H3YA 4YQ6A 4J3CA 3AIAA 3KW2A 5FAIA 4FAKA 3NK6A 3ILKA 4YQOA 4YQCA 4YVIA 4YQ2A 3KTYA 1NS5A 4JAKA 1V2XA 4YVJA 2V3KA 1UALA 3ONPA 3BBDA 3OIJA 3NK7A 3OINA 4YPZA 4YQ4A 1Z85A 4YQ5A 4L69A 4YQ0A 4CNFA 4YQBA 4YQ8A 4YQ1A 1O6DA 4YQNA 1MXIA 4YQ9A 5GM8A 1VH0A 4JWFA 4YPXA 4JWGA 2HA8A 3BBEA 3OIIA 4YPWA 4JALA 4YQGA 3O7BA 4YPYA 5D9FA 3AXZA 3IEFA 4XBOA 4IG6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1X7O A;  4YQP A;  1TO0 A;  3IC6 A;  1UAJ A;  3AI9 X;  4CNG A;  1P9P A;  2Z0Y A;  1V6Z A;  4YQL A;  2QMM A;  4YVH A;  2YY8 A;  2EGW A;  4MCB A;  4PZK A;  1NXZ A;  4YQA A;  2CX8 A;  4YQK A;  3DCM X;  4X3M A;  3KNU A;  2EGV A;  1K3R A;  1X7P A;  2I6D A;  3KY7 A;  3GYQ A;  4YQR A;  5GMB A;  4YVG A;  1UAM A;  1OY5 A;  3N4J A;  4YQD A;  4YQI A;  3QUV A;  2O3A A;  4MCD A;  1J85 A;  2QWV A;  4H3Z A;  4YQQ A;  4RG1 A;  4X3L A;  4YQJ A;  4KDZ A;  1ZJR A;  4CNE A;  4CND A;  5GMC A;  1VHY A;  4KGN A;  1GZ0 A;  4YQ7 A;  5CO4 A;  2V3J A;  4YVK A;  4YQ3 A;  4MCC A;  3N4K A;  4E8B A;  4YQT A;  3BBH A;  3E5Y A;  1UAK A;  1VHK A;  1IPA A;  3L8U A;  4YQS A;  4H3Y A;  4YQ6 A;  4J3C A;  3AIA A;  3KW2 A;  5FAI A;  4FAK A;  3NK6 A;  3ILK A;  4YQO A;  4YQC A;  4YVI A;  4YQ2 A;  3KTY A;  1NS5 A;  4JAK A;  1V2X A;  4YVJ A;  2V3K A;  1UAL A;  3ONP A;  3BBD A;  3OIJ A;  3NK7 A;  3OIN A;  4YPZ A;  4YQ4 A;  1Z85 A;  4YQ5 A;  4L69 A;  4YQ0 A;  4CNF A;  4YQB A;  4YQ8 A;  4YQ1 A;  1O6D A;  4YQN A;  1MXI A;  4YQ9 A;  5GM8 A;  1VH0 A;  4YPX A;  2HA8 A;  3BBE A;  3OII A;  4YPW A;  4JAL A;  4YQG A;  3O7B A;  4YPY A;  5D9F A;  3AXZ A;  3IEF A;  4XBO A;  4IG6 A; 
#chains in the Genus database with same CATH topology
 4JWJ A;  1X7O A;  4YQP A;  1TO0 A;  1MI7 R;  3IC6 A;  1UAJ A;  3AI9 X;  4CNG A;  1P9P A;  2Z0Y A;  1V6Z A;  4YQL A;  3SSX N;  1JHG A;  4YVH A;  2QMM A;  2YY8 A;  2EGW A;  4MCB A;  4PZK A;  1NXZ A;  4FMW A;  3G1C A;  4YQA A;  2CX8 A;  4YQK A;  3SSW N;  3DCM X;  4X3M A;  3KNU A;  2EGV A;  1K3R A;  1X7P A;  2I6D A;  3KY7 A;  3GYQ A;  4YQR A;  5GMB A;  4YVG A;  1UAM A;  1OY5 A;  3N4J A;  4YQD A;  4YQI A;  3QUV A;  2O3A A;  1CO0 A;  4MCD A;  1J85 A;  2QWV A;  4H3Z A;  4YQQ A;  4RG1 A;  4X3L A;  4YQJ A;  4KDZ A;  1ZJR A;  4CNE A;  4CND A;  5GMC A;  4JWH A;  1VHY A;  4KGN A;  1GZ0 A;  4YQ7 A;  5CO4 A;  2V3J A;  4YVK A;  4YQ3 A;  4MCC A;  3N4K A;  4E8B A;  4YQT A;  3BBH A;  1TRO A;  3E5Y A;  1UAK A;  1VHK A;  1IPA A;  3L8U A;  4YQS A;  4H3Y A;  4YQ6 A;  4J3C A;  3AIA A;  3KW2 A;  5FAI A;  4FAK A;  1ZT9 A;  3NK6 A;  3ILK A;  4YQO A;  4YQC A;  4YVI A;  2XDI A;  4YQ2 A;  3KTY A;  1TRR A;  1NS5 A;  4JAK A;  1RCS A;  1V2X A;  1WRT R;  4YVJ A;  2V3K A;  1UAL A;  3ONP A;  3BBD A;  3OIJ A;  3NK7 A;  3OIN A;  4YPZ A;  4YQ4 A;  1Z85 A;  4YQ5 A;  4L69 A;  4YQ0 A;  1WRS R;  2OZ9 R;  4CNF A;  4YQB A;  4YQ8 A;  4YQ1 A;  1O6D A;  3KOR A;  3WRP A;  4YQN A;  3FRW A;  1MXI A;  4YQ9 A;  5GM8 A;  1WRP R;  1VH0 A;  4JWF A;  4YPX A;  4JWG A;  2HA8 A;  3BBE A;  3OII A;  4YPW A;  4JAL A;  4YQG A;  3O7B A;  4YPY A;  5D9F A;  3AXZ A;  3IEF A;  4XBO A;  4IG6 A; 
#chains in the Genus database with same CATH homology
 4JWJ A;  1X7O A;  4YQP A;  1TO0 A;  3IC6 A;  1UAJ A;  3AI9 X;  4CNG A;  1P9P A;  2Z0Y A;  1V6Z A;  4YQL A;  2QMM A;  4YVH A;  2YY8 A;  2EGW A;  4MCB A;  4PZK A;  1NXZ A;  4FMW A;  4YQA A;  2CX8 A;  4YQK A;  3DCM X;  4X3M A;  3KNU A;  2EGV A;  1K3R A;  1X7P A;  2I6D A;  3KY7 A;  3GYQ A;  4YQR A;  5GMB A;  4YVG A;  1UAM A;  1OY5 A;  3N4J A;  4YQD A;  4YQI A;  3QUV A;  2O3A A;  4MCD A;  1J85 A;  2QWV A;  4H3Z A;  4YQQ A;  4RG1 A;  4X3L A;  4YQJ A;  4KDZ A;  1ZJR A;  4CNE A;  4CND A;  5GMC A;  4JWH A;  1VHY A;  4KGN A;  1GZ0 A;  4YQ7 A;  5CO4 A;  2V3J A;  4YVK A;  4YQ3 A;  4MCC A;  3N4K A;  4E8B A;  4YQT A;  3BBH A;  3E5Y A;  1UAK A;  1VHK A;  1IPA A;  3L8U A;  4YQS A;  4H3Y A;  4YQ6 A;  4J3C A;  3AIA A;  3KW2 A;  5FAI A;  4FAK A;  3NK6 A;  3ILK A;  4YQO A;  4YQC A;  4YVI A;  4YQ2 A;  3KTY A;  1NS5 A;  4JAK A;  1V2X A;  4YVJ A;  2V3K A;  1UAL A;  3ONP A;  3BBD A;  3OIJ A;  3NK7 A;  3OIN A;  4YPZ A;  4YQ4 A;  1Z85 A;  4YQ5 A;  4L69 A;  4YQ0 A;  4CNF A;  4YQB A;  4YQ8 A;  4YQ1 A;  1O6D A;  4YQN A;  1MXI A;  4YQ9 A;  5GM8 A;  1VH0 A;  4JWF A;  4YPX A;  4JWG A;  2HA8 A;  3BBE A;  3OII A;  4YPW A;  4JAL A;  4YQG A;  3O7B A;  4YPY A;  5D9F A;  3AXZ A;  3IEF A;  4XBO A;  4IG6 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...