4H3YA

Crystal structure of an asymmetric dimer of a trna (guanine-(n(1)-)-methyltransferase from burkholderia phymatum bound to s-adenosyl homocystein in one half-site
Total Genus 77
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
Knots found
sequence length
255
structure length
255
Chain Sequence
b'SMQFDIVTLFPDMFRALTDWGITSRAAKQERYGLRTWNPRDFTTDNYRTIDDRPYGGGPGMVMLARPLEDAINAAKAAQAEQGIGGARVVMMSPQGATLNHDKVMRFAAEPGLILLCGRYEAIDQRLIDRVVDEEVSLGDFVLSGGELPAMALIDAVVRHLPGVLNDAQSAVQDSFVDGLLDCPHYTRPEEYDGVRVPDVLLGGHHAEIEQWRRREALRNTWLKRPDLIVQARKNKLLSRADEAWLASLAKDASK'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords tRNA (guanine-N(1)-)-methyltransferase
publication title Combining functional and structural genomics to sample the essential Burkholderia structome.
pubmed doi rcsb
source organism Burkholderia phymatum
molecule tags Transferase
total genus 77
structure length 255
sequence length 255
chains with identical sequence B
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.228: tRNA (guanine(37)-N(1))-methyltransferase.
pdb deposition date 2012-09-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01746 tRNA_m1G_MT tRNA (Guanine-1)-methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.20 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A tRNA(m1g37)methyltransferase, domain 2 4h3yA02
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 4h3yA01
3OIJA 2O3AA 3E5YA 2V3KA 3AIAA 4YQOA 4CNEA 4YPYA 2HA8A 3O7BA 4YQPA 4YQ7A 1P9PA 4YQ9A 4YQTA 4IG6A 4YQ0A 1VHKA 3AXZA 4YQIA 4YQJA 1ZJRA 4MCDA 1J85A 4YQSA 4XBOA 4J3CA 3ILKA 2CX8A 4YVKA 3BBDA 4YVJA 5GM8A 1UALA 4YQRA 4YQKA 1V6ZA 2QWVA 1IPAA 3AI9X 4L69A 2I6DA 4JALA 4YQCA 4YQ1A 1Z85A 4CNGA 1VHYA 3KY7A 3DCMX 3N4KA 1MXIA 1UAMA 3BBEA 3ONPA 1UAJA 4JAKA 4X3LA 1NXZA 1X7OA 4YQDA 3IC6A 4YPXA 1O6DA 1V2XA 1X7PA 3QUVA 4H3YA 4YQ4A 4YPZA 4YQQA 4YQ3A 4YQ5A 1K3RA 2Z0YA 3KW2A 4X3MA 1UAKA 5CO4A 1GZ0A 4KDZA 4MCCA 4FAKA 3L8UA 2EGWA 3BBHA 4YQGA 5GMCA 3KNUA 3OINA 5FAIA 2EGVA 4YQ8A 3OIIA 4YPWA 2YY8A 3N4JA 3IEFA 1NS5A 4YQNA 4CNDA 4E8BA 4YQ2A 2QMMA 4PZKA 1TO0A 3GYQA 1OY5A 4KGNA 2V3JA 4YVHA 5GMBA 5D9FA 4CNFA 4YVGA 4YQ6A 4YVIA 3NK6A 3KTYA 4YQLA 4YQAA 4H3ZA 1VH0A 3NK7A 4RG1A 4YQBA 4MCBA
chains in the Genus database with same CATH superfamily
3OIJA 2O3AA 3FRWA 3E5YA 2V3KA 3AIAA 4YQOA 4CNEA 4YPYA 2HA8A 3O7BA 3SSXN 2XDIA 4YQPA 4YQ7A 1P9PA 2OZ9R 4YQ9A 4YQTA 4IG6A 4YQ0A 1VHKA 3AXZA 1TRRA 1TROA 4YQIA 4YQJA 1ZJRA 4MCDA 1J85A 4YQSA 4XBOA 4J3CA 3ILKA 2CX8A 4YVKA 1ZT9A 3BBDA 4YVJA 5GM8A 1UALA 1JHGA 4YQRA 4YQKA 1V6ZA 2QWVA 1IPAA 3WRPA 3AI9X 4L69A 2I6DA 4JALA 4YQCA 4YQ1A 1MI7R 1Z85A 1WRSR 4CNGA 1VHYA 3KY7A 3DCMX 3N4KA 1MXIA 1UAMA 3BBEA 3ONPA 1UAJA 1WRPR 1CO0A 4JWFA 4JAKA 4X3LA 1NXZA 4JWHA 1X7OA 4YQDA 3IC6A 4YPXA 1O6DA 3QUVA 4H3YA 1V2XA 1X7PA 4YQ4A 4YPZA 4YQQA 4YQ3A 4YQ5A 1K3RA 2Z0YA 3KW2A 4X3MA 1UAKA 5CO4A 1GZ0A 4KDZA 4MCCA 4FAKA 1WRTR 3L8UA 2EGWA 3BBHA 4YQGA 3KORA 5GMCA 3KNUA 3OINA 5FAIA 2EGVA 4YQ8A 3OIIA 4JWJA 4YPWA 2YY8A 3N4JA 3IEFA 1RCSA 1NS5A 4YQNA 4CNDA 4E8BA 4JWGA 4YQ2A 2QMMA 3G1CA 4PZKA 3SSWN 1TO0A 3GYQA 1OY5A 4KGNA 2V3JA 4FMWA 4YVHA 5GMBA 5D9FA 4CNFA 4YVGA 4YQ6A 4YVIA 3NK6A 3KTYA 4YQLA 4YQAA 4H3ZA 1VH0A 3NK7A 4RG1A 4YQBA 4MCBA
chains in the Genus database with same CATH topology
3OIJA 2O3AA 3E5YA 2V3KA 3AIAA 4YQOA 4CNEA 4YPYA 2HA8A 3O7BA 4YQPA 4YQ7A 1P9PA 4YQ9A 4YQTA 4IG6A 4YQ0A 1VHKA 3AXZA 4YQIA 4YQJA 1ZJRA 4MCDA 1J85A 4YQSA 4XBOA 4J3CA 3ILKA 2CX8A 4YVKA 3BBDA 4YVJA 5GM8A 1UALA 4YQRA 4YQKA 1V6ZA 2QWVA 1IPAA 3AI9X 4L69A 2I6DA 4JALA 4YQCA 4YQ1A 1Z85A 4CNGA 1VHYA 3KY7A 3DCMX 3N4KA 1MXIA 1UAMA 3BBEA 3ONPA 1UAJA 4JWFA 4JAKA 4X3LA 1NXZA 4JWHA 1X7OA 4YQDA 3IC6A 4YPXA 1O6DA 1V2XA 1X7PA 3QUVA 4H3YA 4YQ4A 4YPZA 4YQQA 4YQ3A 4YQ5A 1K3RA 2Z0YA 3KW2A 4X3MA 1UAKA 5CO4A 1GZ0A 4KDZA 4MCCA 4FAKA 3L8UA 2EGWA 3BBHA 4YQGA 5GMCA 3KNUA 3OINA 5FAIA 2EGVA 4YQ8A 3OIIA 4JWJA 4YPWA 2YY8A 3N4JA 3IEFA 1NS5A 4YQNA 4CNDA 4E8BA 4JWGA 4YQ2A 2QMMA 4PZKA 1TO0A 3GYQA 1OY5A 4KGNA 2V3JA 4FMWA 4YVHA 5GMBA 5D9FA 4CNFA 4YVGA 4YQ6A 4YVIA 3NK6A 3KTYA 4YQLA 4YQAA 4H3ZA 1VH0A 3NK7A 4RG1A 4YQBA 4MCBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3OIJ A;  2O3A A;  3E5Y A;  2V3K A;  3AIA A;  4YQO A;  4CNE A;  4YPY A;  2HA8 A;  3O7B A;  4YQP A;  4YQ7 A;  1P9P A;  4YQ9 A;  4YQT A;  4IG6 A;  4YQ0 A;  1VHK A;  3AXZ A;  4YQI A;  4YQJ A;  1ZJR A;  4MCD A;  1J85 A;  4YQS A;  4XBO A;  4J3C A;  3ILK A;  2CX8 A;  4YVK A;  3BBD A;  4YVJ A;  5GM8 A;  1UAL A;  4YQR A;  4YQK A;  1V6Z A;  2QWV A;  1IPA A;  3AI9 X;  4L69 A;  2I6D A;  4JAL A;  4YQC A;  4YQ1 A;  1Z85 A;  4CNG A;  1VHY A;  3KY7 A;  3DCM X;  3N4K A;  1MXI A;  1UAM A;  3BBE A;  3ONP A;  1UAJ A;  4JAK A;  4X3L A;  1NXZ A;  1X7O A;  4YQD A;  3IC6 A;  4YPX A;  1O6D A;  1V2X A;  1X7P A;  3QUV A;  4H3Y A;  4YQ4 A;  4YPZ A;  4YQQ A;  4YQ3 A;  4YQ5 A;  1K3R A;  2Z0Y A;  3KW2 A;  4X3M A;  1UAK A;  5CO4 A;  1GZ0 A;  4KDZ A;  4MCC A;  4FAK A;  3L8U A;  2EGW A;  3BBH A;  4YQG A;  5GMC A;  3KNU A;  3OIN A;  5FAI A;  2EGV A;  4YQ8 A;  3OII A;  4YPW A;  2YY8 A;  3N4J A;  3IEF A;  1NS5 A;  4YQN A;  4CND A;  4E8B A;  4YQ2 A;  2QMM A;  4PZK A;  1TO0 A;  3GYQ A;  1OY5 A;  4KGN A;  2V3J A;  4YVH A;  5GMB A;  5D9F A;  4CNF A;  4YVG A;  4YQ6 A;  4YVI A;  3NK6 A;  3KTY A;  4YQL A;  4YQA A;  4H3Z A;  1VH0 A;  3NK7 A;  4RG1 A;  4YQB A;  4MCB A; 
#chains in the Genus database with same CATH topology
 3OIJ A;  2O3A A;  3FRW A;  3E5Y A;  2V3K A;  3AIA A;  4YQO A;  4CNE A;  4YPY A;  2HA8 A;  3O7B A;  3SSX N;  2XDI A;  4YQP A;  4YQ7 A;  1P9P A;  2OZ9 R;  4YQ9 A;  4YQT A;  4IG6 A;  4YQ0 A;  1VHK A;  3AXZ A;  1TRR A;  1TRO A;  4YQI A;  4YQJ A;  1ZJR A;  4MCD A;  1J85 A;  4YQS A;  4XBO A;  4J3C A;  3ILK A;  2CX8 A;  4YVK A;  1ZT9 A;  3BBD A;  4YVJ A;  5GM8 A;  1UAL A;  1JHG A;  4YQR A;  4YQK A;  1V6Z A;  2QWV A;  1IPA A;  3WRP A;  3AI9 X;  4L69 A;  2I6D A;  4JAL A;  4YQC A;  4YQ1 A;  1MI7 R;  1Z85 A;  1WRS R;  4CNG A;  1VHY A;  3KY7 A;  3DCM X;  3N4K A;  1MXI A;  1UAM A;  3BBE A;  3ONP A;  1UAJ A;  1WRP R;  1CO0 A;  4JWF A;  4JAK A;  4X3L A;  1NXZ A;  4JWH A;  1X7O A;  4YQD A;  3IC6 A;  4YPX A;  1O6D A;  3QUV A;  4H3Y A;  1V2X A;  1X7P A;  4YQ4 A;  4YPZ A;  4YQQ A;  4YQ3 A;  4YQ5 A;  1K3R A;  2Z0Y A;  3KW2 A;  4X3M A;  1UAK A;  5CO4 A;  1GZ0 A;  4KDZ A;  4MCC A;  4FAK A;  1WRT R;  3L8U A;  2EGW A;  3BBH A;  4YQG A;  3KOR A;  5GMC A;  3KNU A;  3OIN A;  5FAI A;  2EGV A;  4YQ8 A;  3OII A;  4JWJ A;  4YPW A;  2YY8 A;  3N4J A;  3IEF A;  1RCS A;  1NS5 A;  4YQN A;  4CND A;  4E8B A;  4JWG A;  4YQ2 A;  2QMM A;  3G1C A;  4PZK A;  3SSW N;  1TO0 A;  3GYQ A;  1OY5 A;  4KGN A;  2V3J A;  4FMW A;  4YVH A;  5GMB A;  5D9F A;  4CNF A;  4YVG A;  4YQ6 A;  4YVI A;  3NK6 A;  3KTY A;  4YQL A;  4YQA A;  4H3Z A;  1VH0 A;  3NK7 A;  4RG1 A;  4YQB A;  4MCB A; 
#chains in the Genus database with same CATH homology
 3OIJ A;  2O3A A;  3E5Y A;  2V3K A;  3AIA A;  4YQO A;  4CNE A;  4YPY A;  2HA8 A;  3O7B A;  4YQP A;  4YQ7 A;  1P9P A;  4YQ9 A;  4YQT A;  4IG6 A;  4YQ0 A;  1VHK A;  3AXZ A;  4YQI A;  4YQJ A;  1ZJR A;  4MCD A;  1J85 A;  4YQS A;  4XBO A;  4J3C A;  3ILK A;  2CX8 A;  4YVK A;  3BBD A;  4YVJ A;  5GM8 A;  1UAL A;  4YQR A;  4YQK A;  1V6Z A;  2QWV A;  1IPA A;  3AI9 X;  4L69 A;  2I6D A;  4JAL A;  4YQC A;  4YQ1 A;  1Z85 A;  4CNG A;  1VHY A;  3KY7 A;  3DCM X;  3N4K A;  1MXI A;  1UAM A;  3BBE A;  3ONP A;  1UAJ A;  4JWF A;  4JAK A;  4X3L A;  1NXZ A;  4JWH A;  1X7O A;  4YQD A;  3IC6 A;  4YPX A;  1O6D A;  1V2X A;  1X7P A;  3QUV A;  4H3Y A;  4YQ4 A;  4YPZ A;  4YQQ A;  4YQ3 A;  4YQ5 A;  1K3R A;  2Z0Y A;  3KW2 A;  4X3M A;  1UAK A;  5CO4 A;  1GZ0 A;  4KDZ A;  4MCC A;  4FAK A;  3L8U A;  2EGW A;  3BBH A;  4YQG A;  5GMC A;  3KNU A;  3OIN A;  5FAI A;  2EGV A;  4YQ8 A;  3OII A;  4JWJ A;  4YPW A;  2YY8 A;  3N4J A;  3IEF A;  1NS5 A;  4YQN A;  4CND A;  4E8B A;  4JWG A;  4YQ2 A;  2QMM A;  4PZK A;  1TO0 A;  3GYQ A;  1OY5 A;  4KGN A;  2V3J A;  4FMW A;  4YVH A;  5GMB A;  5D9F A;  4CNF A;  4YVG A;  4YQ6 A;  4YVI A;  3NK6 A;  3KTY A;  4YQL A;  4YQA A;  4H3Z A;  1VH0 A;  3NK7 A;  4RG1 A;  4YQB A;  4MCB A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...