4H3YA

Crystal structure of an asymmetric dimer of a trna (guanine-(n(1)-)-methyltransferase from burkholderia phymatum bound to s-adenosyl homocystein in one half-site
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
Knots found
sequence length
255
structure length
255
Chain Sequence
SMQFDIVTLFPDMFRALTDWGITSRAAKQERYGLRTWNPRDFTTDNYRTIDDRPYGGGPGMVMLARPLEDAINAAKAAQAEQGIGGARVVMMSPQGATLNHDKVMRFAAEPGLILLCGRYEAIDQRLIDRVVDEEVSLGDFVLSGGELPAMALIDAVVRHLPGVLNDAQSAVQDSFVDGLLDCPHYTRPEEYDGVRVPDVLLGGHHAEIEQWRRREALRNTWLKRPDLIVQARKNKLLSRADEAWLASLAKDASK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords tRNA (guanine-N(1)-)-methyltransferase
publication title Combining functional and structural genomics to sample the essential Burkholderia structome.
pubmed doi rcsb
source organism Burkholderia phymatum
molecule tags Transferase
total genus 77
structure length 255
sequence length 255
chains with identical sequence B
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.228: tRNA (guanine(37)-N(1))-methyltransferase.
pdb deposition date 2012-09-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01746 tRNA_m1G_MT tRNA (Guanine-1)-methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.20 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A tRNA(m1g37)methyltransferase, domain 2 4h3yA02
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 4h3yA01
1VH0A 4CNDA 4YQPA 4YQ1A 3N4KA 1J85A 1V6ZA 3GYQA 4JAKA 4YQQA 3KW2A 3BBDA 4YQLA 3IC6A 3AI9X 5D9FA 3NK7A 4YQKA 4YQ4A 4YPZA 4YQIA 4L69A 4MCCA 4CNEA 2QWVA 4RG1A 1O6DA 4YQJA 2HA8A 1X7OA 4YQAA 3QUVA 4YQ3A 4JALA 1MXIA 4H3YA 4YPXA 3ONPA 4YVGA 4YPWA 1K3RA 4CNGA 5GMBA 2Z0YA 4YQDA 4YQBA 3N4JA 3AIAA 2YY8A 3BBEA 3OIJA 3AXZA 4YQOA 4YPYA 5GM8A 4YVHA 3BBHA 5FAIA 4XBOA 1UALA 1ZJRA 1GZ0A 4YQ5A 3OINA 4YQ2A 4IG6A 3E5YA 1VHYA 3KNUA 3ILKA 2EGWA 4KGNA 4YQ8A 1V2XA 4YQRA 2QMMA 4MCBA 1NXZA 3IEFA 4MCDA 3KTYA 1Z85A 2O3AA 4PZKA 4YQNA 3L8UA 3OIIA 1X7PA 4YVJA 4YQ7A 1P9PA 1VHKA 4YQ0A 2I6DA 4YVIA 1UAMA 4YQ6A 1IPAA 4KDZA 4E8BA 4J3CA 5CO4A 4YVKA 4YQ9A 4FAKA 3KY7A 2EGVA 2V3KA 1NS5A 4X3LA 4H3ZA 4YQCA 2CX8A 1UAJA 4YQGA 4CNFA 4YQTA 3O7BA 1TO0A 4YQSA 5GMCA 1UAKA 3NK6A 1OY5A 4X3MA 2V3JA 3DCMX
chains in the Genus database with same CATH superfamily
1VH0A 4CNDA 4YQPA 4YQ1A 3N4KA 1J85A 1V6ZA 3GYQA 4JAKA 4YQQA 3KORA 3KW2A 3BBDA 4YQLA 3IC6A 3AI9X 5D9FA 3NK7A 4YQKA 4YQ4A 4YPZA 4YQIA 4L69A 4MCCA 4CNEA 2QWVA 4RG1A 1O6DA 4YQJA 2HA8A 1X7OA 4YQAA 3QUVA 4YQ3A 4FMWA 4JALA 1MXIA 4H3YA 3FRWA 4YPXA 3ONPA 4YVGA 4YPWA 1K3RA 4CNGA 5GMBA 2Z0YA 4YQDA 4YQBA 3N4JA 1CO0A 3AIAA 2YY8A 3BBEA 3OIJA 3AXZA 4YQOA 4YPYA 1TROA 4JWGA 5GM8A 4YVHA 3BBHA 3G1CA 5FAIA 4XBOA 1UALA 1ZJRA 1GZ0A 3SSWN 4YQ5A 2XDIA 3OINA 4YQ2A 4IG6A 3E5YA 2OZ9R 1VHYA 3KNUA 3ILKA 1WRPR 2EGWA 4KGNA 4YQ8A 1V2XA 1TRRA 4YQRA 2QMMA 4MCBA 1NXZA 3IEFA 4MCDA 3KTYA 1Z85A 2O3AA 4PZKA 4YQNA 3L8UA 3OIIA 1X7PA 4YVJA 4YQ7A 1ZT9A 1P9PA 1VHKA 4YQ0A 2I6DA 4YVIA 1UAMA 4YQ6A 1IPAA 4KDZA 3WRPA 1WRSR 4E8BA 3SSXN 4J3CA 5CO4A 4JWFA 4YVKA 4YQ9A 1MI7R 4FAKA 1RCSA 3KY7A 2EGVA 4JWHA 4JWJA 2V3KA 1JHGA 1NS5A 4X3LA 4H3ZA 4YQCA 2CX8A 1UAJA 4YQGA 4CNFA 4YQTA 3O7BA 1TO0A 4YQSA 1WRTR 5GMCA 1UAKA 3NK6A 1OY5A 4X3MA 2V3JA 3DCMX
chains in the Genus database with same CATH topology
1VH0A 4CNDA 4YQPA 4YQ1A 3N4KA 1J85A 1V6ZA 3GYQA 4JAKA 4YQQA 3KW2A 3BBDA 4YQLA 3IC6A 3AI9X 5D9FA 3NK7A 4YQKA 4YQ4A 4YPZA 4YQIA 4L69A 4MCCA 4CNEA 2QWVA 4RG1A 1O6DA 4YQJA 2HA8A 1X7OA 4YQAA 3QUVA 4YQ3A 4FMWA 4JALA 1MXIA 4H3YA 4YPXA 3ONPA 4YVGA 4YPWA 1K3RA 4CNGA 5GMBA 2Z0YA 4YQDA 4YQBA 3N4JA 3AIAA 2YY8A 3BBEA 3OIJA 3AXZA 4YQOA 4YPYA 4JWGA 5GM8A 4YVHA 3BBHA 5FAIA 4XBOA 1UALA 1ZJRA 1GZ0A 4YQ5A 3OINA 4YQ2A 4IG6A 3E5YA 1VHYA 3KNUA 3ILKA 2EGWA 4KGNA 4YQ8A 1V2XA 4YQRA 2QMMA 4MCBA 1NXZA 3IEFA 4MCDA 3KTYA 1Z85A 2O3AA 4PZKA 4YQNA 3L8UA 3OIIA 1X7PA 4YVJA 4YQ7A 1P9PA 1VHKA 4YQ0A 2I6DA 4YVIA 1UAMA 4YQ6A 1IPAA 4KDZA 4E8BA 4J3CA 5CO4A 4JWFA 4YVKA 4YQ9A 4FAKA 3KY7A 2EGVA 4JWHA 4JWJA 2V3KA 1NS5A 4X3LA 4H3ZA 4YQCA 2CX8A 1UAJA 4YQGA 4CNFA 4YQTA 3O7BA 1TO0A 4YQSA 5GMCA 1UAKA 3NK6A 1OY5A 4X3MA 2V3JA 3DCMX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VH0 A;  4CND A;  4YQP A;  4YQ1 A;  3N4K A;  1J85 A;  1V6Z A;  3GYQ A;  4JAK A;  4YQQ A;  3KW2 A;  3BBD A;  4YQL A;  3IC6 A;  3AI9 X;  5D9F A;  3NK7 A;  4YQK A;  4YQ4 A;  4YPZ A;  4YQI A;  4L69 A;  4MCC A;  4CNE A;  2QWV A;  4RG1 A;  1O6D A;  4YQJ A;  2HA8 A;  1X7O A;  4YQA A;  3QUV A;  4YQ3 A;  4JAL A;  1MXI A;  4H3Y A;  4YPX A;  3ONP A;  4YVG A;  4YPW A;  1K3R A;  4CNG A;  5GMB A;  2Z0Y A;  4YQD A;  4YQB A;  3N4J A;  3AIA A;  2YY8 A;  3BBE A;  3OIJ A;  3AXZ A;  4YQO A;  4YPY A;  5GM8 A;  4YVH A;  3BBH A;  5FAI A;  4XBO A;  1UAL A;  1ZJR A;  1GZ0 A;  4YQ5 A;  3OIN A;  4YQ2 A;  4IG6 A;  3E5Y A;  1VHY A;  3KNU A;  3ILK A;  2EGW A;  4KGN A;  4YQ8 A;  1V2X A;  4YQR A;  2QMM A;  4MCB A;  1NXZ A;  3IEF A;  4MCD A;  3KTY A;  1Z85 A;  2O3A A;  4PZK A;  4YQN A;  3L8U A;  3OII A;  1X7P A;  4YVJ A;  4YQ7 A;  1P9P A;  1VHK A;  4YQ0 A;  2I6D A;  4YVI A;  1UAM A;  4YQ6 A;  1IPA A;  4KDZ A;  4E8B A;  4J3C A;  5CO4 A;  4YVK A;  4YQ9 A;  4FAK A;  3KY7 A;  2EGV A;  2V3K A;  1NS5 A;  4X3L A;  4H3Z A;  4YQC A;  2CX8 A;  1UAJ A;  4YQG A;  4CNF A;  4YQT A;  3O7B A;  1TO0 A;  4YQS A;  5GMC A;  1UAK A;  3NK6 A;  1OY5 A;  4X3M A;  2V3J A;  3DCM X; 
#chains in the Genus database with same CATH topology
 1VH0 A;  4CND A;  4YQP A;  4YQ1 A;  3N4K A;  1J85 A;  1V6Z A;  3GYQ A;  4JAK A;  4YQQ A;  3KOR A;  3KW2 A;  3BBD A;  4YQL A;  3IC6 A;  3AI9 X;  5D9F A;  3NK7 A;  4YQK A;  4YQ4 A;  4YPZ A;  4YQI A;  4L69 A;  4MCC A;  4CNE A;  2QWV A;  4RG1 A;  1O6D A;  4YQJ A;  2HA8 A;  1X7O A;  4YQA A;  3QUV A;  4YQ3 A;  4FMW A;  4JAL A;  1MXI A;  4H3Y A;  3FRW A;  4YPX A;  3ONP A;  4YVG A;  4YPW A;  1K3R A;  4CNG A;  5GMB A;  2Z0Y A;  4YQD A;  4YQB A;  3N4J A;  1CO0 A;  3AIA A;  2YY8 A;  3BBE A;  3OIJ A;  3AXZ A;  4YQO A;  4YPY A;  1TRO A;  4JWG A;  5GM8 A;  4YVH A;  3BBH A;  3G1C A;  5FAI A;  4XBO A;  1UAL A;  1ZJR A;  1GZ0 A;  3SSW N;  4YQ5 A;  2XDI A;  3OIN A;  4YQ2 A;  4IG6 A;  3E5Y A;  2OZ9 R;  1VHY A;  3KNU A;  3ILK A;  1WRP R;  2EGW A;  4KGN A;  4YQ8 A;  1V2X A;  1TRR A;  4YQR A;  2QMM A;  4MCB A;  1NXZ A;  3IEF A;  4MCD A;  3KTY A;  1Z85 A;  2O3A A;  4PZK A;  4YQN A;  3L8U A;  3OII A;  1X7P A;  4YVJ A;  4YQ7 A;  1ZT9 A;  1P9P A;  1VHK A;  4YQ0 A;  2I6D A;  4YVI A;  1UAM A;  4YQ6 A;  1IPA A;  4KDZ A;  3WRP A;  1WRS R;  4E8B A;  3SSX N;  4J3C A;  5CO4 A;  4JWF A;  4YVK A;  4YQ9 A;  1MI7 R;  4FAK A;  1RCS A;  3KY7 A;  2EGV A;  4JWH A;  4JWJ A;  2V3K A;  1JHG A;  1NS5 A;  4X3L A;  4H3Z A;  4YQC A;  2CX8 A;  1UAJ A;  4YQG A;  4CNF A;  4YQT A;  3O7B A;  1TO0 A;  4YQS A;  1WRT R;  5GMC A;  1UAK A;  3NK6 A;  1OY5 A;  4X3M A;  2V3J A;  3DCM X; 
#chains in the Genus database with same CATH homology
 1VH0 A;  4CND A;  4YQP A;  4YQ1 A;  3N4K A;  1J85 A;  1V6Z A;  3GYQ A;  4JAK A;  4YQQ A;  3KW2 A;  3BBD A;  4YQL A;  3IC6 A;  3AI9 X;  5D9F A;  3NK7 A;  4YQK A;  4YQ4 A;  4YPZ A;  4YQI A;  4L69 A;  4MCC A;  4CNE A;  2QWV A;  4RG1 A;  1O6D A;  4YQJ A;  2HA8 A;  1X7O A;  4YQA A;  3QUV A;  4YQ3 A;  4FMW A;  4JAL A;  1MXI A;  4H3Y A;  4YPX A;  3ONP A;  4YVG A;  4YPW A;  1K3R A;  4CNG A;  5GMB A;  2Z0Y A;  4YQD A;  4YQB A;  3N4J A;  3AIA A;  2YY8 A;  3BBE A;  3OIJ A;  3AXZ A;  4YQO A;  4YPY A;  4JWG A;  5GM8 A;  4YVH A;  3BBH A;  5FAI A;  4XBO A;  1UAL A;  1ZJR A;  1GZ0 A;  4YQ5 A;  3OIN A;  4YQ2 A;  4IG6 A;  3E5Y A;  1VHY A;  3KNU A;  3ILK A;  2EGW A;  4KGN A;  4YQ8 A;  1V2X A;  4YQR A;  2QMM A;  4MCB A;  1NXZ A;  3IEF A;  4MCD A;  3KTY A;  1Z85 A;  2O3A A;  4PZK A;  4YQN A;  3L8U A;  3OII A;  1X7P A;  4YVJ A;  4YQ7 A;  1P9P A;  1VHK A;  4YQ0 A;  2I6D A;  4YVI A;  1UAM A;  4YQ6 A;  1IPA A;  4KDZ A;  4E8B A;  4J3C A;  5CO4 A;  4JWF A;  4YVK A;  4YQ9 A;  4FAK A;  3KY7 A;  2EGV A;  4JWH A;  4JWJ A;  2V3K A;  1NS5 A;  4X3L A;  4H3Z A;  4YQC A;  2CX8 A;  1UAJ A;  4YQG A;  4CNF A;  4YQT A;  3O7B A;  1TO0 A;  4YQS A;  5GMC A;  1UAK A;  3NK6 A;  1OY5 A;  4X3M A;  2V3J A;  3DCM X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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