1RCSA

Nmr study of trp repressor-operator dna complex
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
104
structure length
104
Chain Sequence
QSPYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLLKS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription/dna
molecule keywords DNA (5'-D(*CP*GP*TP*AP*CP*TP*AP*GP*TP*TP*AP*AP*CP*TP*AP*GP*T
publication title The solution structures of the trp repressor-operator DNA complex.
pubmed doi rcsb
total genus 19
structure length 104
sequence length 104
chains with identical sequence B
ec nomenclature
pdb deposition date 1995-05-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01371 Trp_repressor Trp repressor protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.10 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A TrpR-like 1rcsA00
2OZ9R 3WRPA 1TRRA 3SSXN 1ZT9A 3SSWN 1WRTR 3KORA 1JHGA 1WRPR 1MI7R 2XDIA 1WRSR 3FRWA 1TROA 3G1CA 1CO0A 1RCSA
chains in the Genus database with same CATH superfamily
1P9PA 4IG6A 1ZT9A 4YQIA 4YQ2A 4YQTA 3KORA 4YVKA 4YQNA 1MI7R 1OY5A 1UALA 3QUVA 4H3YA 1UAJA 4YQSA 4YQ3A 4YQ5A 4YQGA 4YVIA 1RCSA 4H3ZA 4YQ0A 1UAMA 1WRTR 4MCDA 4YPZA 5D9FA 4YQPA 1JHGA 2XDIA 4MCBA 4MCCA 4YVGA 4YQ6A 4YPXA 4YQOA 4YQCA 4YQQA 1TROA 4YQBA 4YQLA 3WRPA 1TRRA 3KNUA 3SSXN 4YPYA 4YQ4A 4YQJA 4YQRA 1WRSR 3FRWA 4YPWA 4YVJA 4YQ8A 4YQ9A 4YQAA 2OZ9R 1UAKA 3KY7A 4YQ7A 3SSWN 4YVHA 1WRPR 3AXZA 4YQ1A 4YQKA 3G1CA 1CO0A 3IEFA 4YQDA
chains in the Genus database with same CATH topology
2OZ9R 3WRPA 1TRRA 3SSXN 1ZT9A 3SSWN 1WRTR 3KORA 1JHGA 1WRPR 1MI7R 2XDIA 1WRSR 3FRWA 1TROA 3G1CA 1CO0A 1RCSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OZ9 R;  3WRP A;  1TRR A;  3SSX N;  1ZT9 A;  3SSW N;  1WRT R;  3KOR A;  1JHG A;  1WRP R;  1MI7 R;  2XDI A;  1WRS R;  3FRW A;  1TRO A;  3G1C A;  1CO0 A;  1RCS A; 
#chains in the Genus database with same CATH topology
 1P9P A;  4IG6 A;  1ZT9 A;  4YQI A;  4YQ2 A;  4YQT A;  3KOR A;  4YVK A;  4YQN A;  1MI7 R;  1OY5 A;  1UAL A;  3QUV A;  4H3Y A;  1UAJ A;  4YQS A;  4YQ3 A;  4YQ5 A;  4YQG A;  4YVI A;  1RCS A;  4H3Z A;  4YQ0 A;  1UAM A;  1WRT R;  4MCD A;  4YPZ A;  5D9F A;  4YQP A;  1JHG A;  2XDI A;  4MCB A;  4MCC A;  4YVG A;  4YQ6 A;  4YPX A;  4YQO A;  4YQC A;  4YQQ A;  1TRO A;  4YQB A;  4YQL A;  3WRP A;  1TRR A;  3KNU A;  3SSX N;  4YPY A;  4YQ4 A;  4YQJ A;  4YQR A;  1WRS R;  3FRW A;  4YPW A;  4YVJ A;  4YQ8 A;  4YQ9 A;  4YQA A;  2OZ9 R;  1UAK A;  3KY7 A;  4YQ7 A;  3SSW N;  4YVH A;  1WRP R;  3AXZ A;  4YQ1 A;  4YQK A;  3G1C A;  1CO0 A;  3IEF A;  4YQD A; 
#chains in the Genus database with same CATH homology
 2OZ9 R;  3WRP A;  1TRR A;  3SSX N;  1ZT9 A;  3SSW N;  1WRT R;  3KOR A;  1JHG A;  1WRP R;  1MI7 R;  2XDI A;  1WRS R;  3FRW A;  1TRO A;  3G1C A;  1CO0 A;  1RCS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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