1RCSA

Nmr study of trp repressor-operator dna complex
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
104
structure length
104
Chain Sequence
QSPYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLLKS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The solution structures of the trp repressor-operator DNA complex.
pubmed doi rcsb
molecule tags Transcription/dna
molecule keywords DNA (5'-D(*CP*GP*TP*AP*CP*TP*AP*GP*TP*TP*AP*AP*CP*TP*AP*GP*T
total genus 19
structure length 104
sequence length 104
chains with identical sequence B
ec nomenclature
pdb deposition date 1995-05-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01371 Trp_repressor Trp repressor protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.10 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A TrpR-like 1rcsA00
3SSWN 1WRSR 2XDIA 1JHGA 1ZT9A 1TROA 1TRRA 3KORA 1WRPR 3G1CA 3WRPA 2OZ9R 1WRTR 1CO0A 1RCSA 3FRWA 1MI7R 3SSXN
chains in the Genus database with same CATH superfamily
4YQIA 1JHGA 3IEFA 4YQTA 4YPXA 1UAJA 4YQCA 4YQKA 4YPZA 3SSXN 3AXZA 4YQAA 4YQGA 4YVKA 1ZT9A 4YQ9A 4H3ZA 4YVJA 5D9FA 4MCDA 3SSWN 1UALA 3KY7A 4YQOA 4YQRA 1OY5A 1TRRA 4YQ1A 1P9PA 4YQ4A 4YQLA 4YVIA 3G1CA 2OZ9R 1WRTR 4YQ8A 1TROA 4YQNA 4YQQA 4MCBA 1CO0A 4H3YA 1WRSR 4YVGA 2XDIA 3KNUA 1UAKA 3KORA 4YPWA 4YQ6A 1WRPR 4IG6A 4YVHA 4YQ0A 4YQ3A 3QUVA 3FRWA 1MI7R 4YQDA 4YQBA 4YQ7A 4YQPA 1UAMA 4YQJA 4YQ5A 4YPYA 3WRPA 4YQ2A 1RCSA 4YQSA 4MCCA
chains in the Genus database with same CATH topology
3SSWN 1WRSR 2XDIA 1JHGA 1ZT9A 1TROA 1TRRA 3KORA 1WRPR 3G1CA 3WRPA 2OZ9R 1WRTR 1CO0A 1RCSA 3FRWA 1MI7R 3SSXN
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SSW N;  1WRS R;  2XDI A;  1JHG A;  1ZT9 A;  1TRO A;  1TRR A;  3KOR A;  1WRP R;  3G1C A;  3WRP A;  2OZ9 R;  1WRT R;  1CO0 A;  1RCS A;  3FRW A;  1MI7 R;  3SSX N; 
#chains in the Genus database with same CATH topology
 4YQI A;  1JHG A;  3IEF A;  4YQT A;  4YPX A;  1UAJ A;  4YQC A;  4YQK A;  4YPZ A;  3SSX N;  3AXZ A;  4YQA A;  4YQG A;  4YVK A;  1ZT9 A;  4YQ9 A;  4H3Z A;  4YVJ A;  5D9F A;  4MCD A;  3SSW N;  1UAL A;  3KY7 A;  4YQO A;  4YQR A;  1OY5 A;  1TRR A;  4YQ1 A;  1P9P A;  4YQ4 A;  4YQL A;  4YVI A;  3G1C A;  2OZ9 R;  1WRT R;  4YQ8 A;  1TRO A;  4YQN A;  4YQQ A;  4MCB A;  1CO0 A;  4H3Y A;  1WRS R;  4YVG A;  2XDI A;  3KNU A;  1UAK A;  3KOR A;  4YPW A;  4YQ6 A;  1WRP R;  4IG6 A;  4YVH A;  4YQ0 A;  4YQ3 A;  3QUV A;  3FRW A;  1MI7 R;  4YQD A;  4YQB A;  4YQ7 A;  4YQP A;  1UAM A;  4YQJ A;  4YQ5 A;  4YPY A;  3WRP A;  4YQ2 A;  1RCS A;  4YQS A;  4MCC A; 
#chains in the Genus database with same CATH homology
 3SSW N;  1WRS R;  2XDI A;  1JHG A;  1ZT9 A;  1TRO A;  1TRR A;  3KOR A;  1WRP R;  3G1C A;  3WRP A;  2OZ9 R;  1WRT R;  1CO0 A;  1RCS A;  3FRW A;  1MI7 R;  3SSX N; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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