1RCSA

Nmr study of trp repressor-operator dna complex
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
104
structure length
104
Chain Sequence
QSPYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLLKS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords DNA (5'-D(*CP*GP*TP*AP*CP*TP*AP*GP*TP*TP*AP*AP*CP*TP*AP*GP*T
publication title The solution structures of the trp repressor-operator DNA complex.
pubmed doi rcsb
molecule tags Transcription/dna
total genus 19
structure length 104
sequence length 104
chains with identical sequence B
ec nomenclature
pdb deposition date 1995-05-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01371 Trp_repressor Trp repressor protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.10 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A TrpR-like 1rcsA00
2XDIA 1ZT9A 3KORA 3G1CA 3WRPA 1RCSA 1TROA 3SSWN 1CO0A 1WRTR 1MI7R 1WRPR 1JHGA 2OZ9R 3FRWA 1TRRA 3SSXN 1WRSR
chains in the Genus database with same CATH superfamily
4YVKA 1UALA 3QUVA 4YVGA 4YQ3A 2XDIA 1ZT9A 4YVJA 4YQ5A 1OY5A 1P9PA 1UAJA 1RCSA 1UAKA 5D9FA 4H3ZA 4YQNA 4YVIA 1JHGA 4MCDA 4YQSA 4YQOA 4YQQA 4YQ9A 4YPYA 4YQ6A 4YPWA 3KNUA 4YVHA 4H3YA 1MI7R 1WRPR 4YQIA 4YPXA 3KORA 1TRRA 4YQAA 4YQJA 4YQKA 1UAMA 4YQPA 3G1CA 4IG6A 4MCCA 4YQLA 1TROA 4YQRA 4YQ7A 1CO0A 2OZ9R 4YQBA 4MCBA 4YQDA 3SSWN 4YQGA 3KY7A 3SSXN 4YQTA 3AXZA 4YQ4A 4YQ8A 4YQCA 3WRPA 4YQ2A 4YQ1A 3IEFA 1WRTR 3FRWA 4YPZA 4YQ0A 1WRSR
chains in the Genus database with same CATH topology
2XDIA 1ZT9A 3KORA 3G1CA 3WRPA 1RCSA 1TROA 3SSWN 1CO0A 1WRTR 1MI7R 1WRPR 1JHGA 2OZ9R 3FRWA 1TRRA 3SSXN 1WRSR
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XDI A;  1ZT9 A;  3KOR A;  3G1C A;  3WRP A;  1RCS A;  1TRO A;  3SSW N;  1CO0 A;  1WRT R;  1MI7 R;  1WRP R;  1JHG A;  2OZ9 R;  3FRW A;  1TRR A;  3SSX N;  1WRS R; 
#chains in the Genus database with same CATH topology
 4YVK A;  1UAL A;  3QUV A;  4YVG A;  4YQ3 A;  2XDI A;  1ZT9 A;  4YVJ A;  4YQ5 A;  1OY5 A;  1P9P A;  1UAJ A;  1RCS A;  1UAK A;  5D9F A;  4H3Z A;  4YQN A;  4YVI A;  1JHG A;  4MCD A;  4YQS A;  4YQO A;  4YQQ A;  4YQ9 A;  4YPY A;  4YQ6 A;  4YPW A;  3KNU A;  4YVH A;  4H3Y A;  1MI7 R;  1WRP R;  4YQI A;  4YPX A;  3KOR A;  1TRR A;  4YQA A;  4YQJ A;  4YQK A;  1UAM A;  4YQP A;  3G1C A;  4IG6 A;  4MCC A;  4YQL A;  1TRO A;  4YQR A;  4YQ7 A;  1CO0 A;  2OZ9 R;  4YQB A;  4MCB A;  4YQD A;  3SSW N;  4YQG A;  3KY7 A;  3SSX N;  4YQT A;  3AXZ A;  4YQ4 A;  4YQ8 A;  4YQC A;  3WRP A;  4YQ2 A;  4YQ1 A;  3IEF A;  1WRT R;  3FRW A;  4YPZ A;  4YQ0 A;  1WRS R; 
#chains in the Genus database with same CATH homology
 2XDI A;  1ZT9 A;  3KOR A;  3G1C A;  3WRP A;  1RCS A;  1TRO A;  3SSW N;  1CO0 A;  1WRT R;  1MI7 R;  1WRP R;  1JHG A;  2OZ9 R;  3FRW A;  1TRR A;  3SSX N;  1WRS R; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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