1JHGA

Trp repressor mutant v58i
Total Genus 34
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
101
structure length
101
Chain Sequence
SAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLLKSD
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title An atomic view of the L-tryptophan binding site of trp repressor.
pubmed rcsb
molecule tags Dna binding protein
source organism Escherichia coli
molecule keywords TRP OPERON REPRESSOR
total genus 34
structure length 101
sequence length 101
ec nomenclature
pdb deposition date 1996-07-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01371 Trp_repressor Trp repressor protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.10 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A TrpR-like 1jhgA00
1MI7R 1JHGA 3WRPA 3SSXN 1TROA 3KORA 1WRTR 2OZ9R 2XDIA 3G1CA 3FRWA 1TRRA 3SSWN 1CO0A 1WRSR 1ZT9A 1RCSA 1WRPR
chains in the Genus database with same CATH superfamily
4YQLA 1P9PA 4YVHA 3AXZA 2OZ9R 2XDIA 3G1CA 4YQSA 4YQBA 4YPXA 4YQPA 3SSWN 4YVGA 1TRRA 1WRSR 4YQQA 4YQ9A 1MI7R 4MCCA 4YQ3A 4YQ8A 4YVIA 1TROA 4MCDA 4YPZA 1UAMA 4YQNA 4YQTA 1UALA 4YQ0A 4YQ7A 4YVKA 3QUVA 4YQDA 4YQKA 4MCBA 4YQAA 4YQOA 4H3YA 1UAJA 1JHGA 4YPYA 5D9FA 4YQ4A 3FRWA 4H3ZA 4YQ6A 4YQCA 1OY5A 4YQIA 4YQRA 3KORA 1WRPR 3KY7A 3WRPA 3SSXN 4YQGA 3IEFA 4YPWA 1WRTR 4YQ1A 3KNUA 4IG6A 4YQ2A 4YQJA 4YQ5A 1CO0A 1UAKA 1ZT9A 1RCSA 4YVJA
chains in the Genus database with same CATH topology
1MI7R 1JHGA 3WRPA 3SSXN 1TROA 3KORA 1WRTR 2OZ9R 2XDIA 3G1CA 3FRWA 1TRRA 3SSWN 1CO0A 1WRSR 1ZT9A 1RCSA 1WRPR
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MI7 R;  1JHG A;  3WRP A;  3SSX N;  1TRO A;  3KOR A;  1WRT R;  2OZ9 R;  2XDI A;  3G1C A;  3FRW A;  1TRR A;  3SSW N;  1CO0 A;  1WRS R;  1ZT9 A;  1RCS A;  1WRP R; 
#chains in the Genus database with same CATH topology
 4YQL A;  1P9P A;  4YVH A;  3AXZ A;  2OZ9 R;  2XDI A;  3G1C A;  4YQS A;  4YQB A;  4YPX A;  4YQP A;  3SSW N;  4YVG A;  1TRR A;  1WRS R;  4YQQ A;  4YQ9 A;  1MI7 R;  4MCC A;  4YQ3 A;  4YQ8 A;  4YVI A;  1TRO A;  4MCD A;  4YPZ A;  1UAM A;  4YQN A;  4YQT A;  1UAL A;  4YQ0 A;  4YQ7 A;  4YVK A;  3QUV A;  4YQD A;  4YQK A;  4MCB A;  4YQA A;  4YQO A;  4H3Y A;  1UAJ A;  1JHG A;  4YPY A;  5D9F A;  4YQ4 A;  3FRW A;  4H3Z A;  4YQ6 A;  4YQC A;  1OY5 A;  4YQI A;  4YQR A;  3KOR A;  1WRP R;  3KY7 A;  3WRP A;  3SSX N;  4YQG A;  3IEF A;  4YPW A;  1WRT R;  4YQ1 A;  3KNU A;  4IG6 A;  4YQ2 A;  4YQJ A;  4YQ5 A;  1CO0 A;  1UAK A;  1ZT9 A;  1RCS A;  4YVJ A; 
#chains in the Genus database with same CATH homology
 1MI7 R;  1JHG A;  3WRP A;  3SSX N;  1TRO A;  3KOR A;  1WRT R;  2OZ9 R;  2XDI A;  3G1C A;  3FRW A;  1TRR A;  3SSW N;  1CO0 A;  1WRS R;  1ZT9 A;  1RCS A;  1WRP R; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...