1MI7R

Crystal structure of domain swapped trp aporepressor in 30%(v/v) isopropanol
Total Genus 45
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
103
structure length
103
Chain Sequence
QQSPYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title E. coli trp repressor forms a domain-swapped array in aqueous alcohol.
pubmed doi rcsb
molecule tags Transcription
source organism Escherichia coli
molecule keywords Trp operon repressor
total genus 45
structure length 103
sequence length 103
ec nomenclature
pdb deposition date 2002-08-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
R PF01371 Trp_repressor Trp repressor protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.10 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A TrpR-like 1mi7R00
3FRWA 1JHGA 3SSWN 1ZT9A 1WRTR 1TRRA 3SSXN 1TROA 3G1CA 1CO0A 3WRPA 3KORA 2XDIA 2OZ9R 1RCSA 1MI7R 1WRPR 1WRSR
chains in the Genus database with same CATH superfamily
1UALA 4YPXA 4YQ1A 4YQ3A 1ZT9A 1WRTR 4YQNA 1P9PA 4MCDA 4YVGA 4YQAA 4YQGA 4IG6A 4YPZA 4YQBA 2XDIA 3SSWN 4YQ5A 4YQKA 1WRSR 4YPWA 4YQRA 4MCBA 4YPYA 4YQQA 4YQSA 1TRRA 4YQJA 4YQ6A 5D9FA 1CO0A 3KORA 4YQPA 3FRWA 1WRPR 4YVHA 4YQCA 4YQLA 4YVKA 4H3YA 4YVJA 4YQIA 1TROA 1OY5A 3G1CA 3KNUA 1UAJA 3IEFA 3QUVA 3WRPA 3AXZA 2OZ9R 4H3ZA 4YQ7A 4YQ0A 1RCSA 4MCCA 4YQDA 4YQ4A 1JHGA 1UAMA 4YQTA 3SSXN 4YQOA 4YQ8A 4YQ2A 3KY7A 4YVIA 4YQ9A 1UAKA 1MI7R
chains in the Genus database with same CATH topology
3FRWA 1JHGA 3SSWN 1ZT9A 1WRTR 1TRRA 3SSXN 1TROA 3G1CA 1CO0A 3WRPA 3KORA 2XDIA 2OZ9R 1RCSA 1MI7R 1WRPR 1WRSR
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FRW A;  1JHG A;  3SSW N;  1ZT9 A;  1WRT R;  1TRR A;  3SSX N;  1TRO A;  3G1C A;  1CO0 A;  3WRP A;  3KOR A;  2XDI A;  2OZ9 R;  1RCS A;  1MI7 R;  1WRP R;  1WRS R; 
#chains in the Genus database with same CATH topology
 1UAL A;  4YPX A;  4YQ1 A;  4YQ3 A;  1ZT9 A;  1WRT R;  4YQN A;  1P9P A;  4MCD A;  4YVG A;  4YQA A;  4YQG A;  4IG6 A;  4YPZ A;  4YQB A;  2XDI A;  3SSW N;  4YQ5 A;  4YQK A;  1WRS R;  4YPW A;  4YQR A;  4MCB A;  4YPY A;  4YQQ A;  4YQS A;  1TRR A;  4YQJ A;  4YQ6 A;  5D9F A;  1CO0 A;  3KOR A;  4YQP A;  3FRW A;  1WRP R;  4YVH A;  4YQC A;  4YQL A;  4YVK A;  4H3Y A;  4YVJ A;  4YQI A;  1TRO A;  1OY5 A;  3G1C A;  3KNU A;  1UAJ A;  3IEF A;  3QUV A;  3WRP A;  3AXZ A;  2OZ9 R;  4H3Z A;  4YQ7 A;  4YQ0 A;  1RCS A;  4MCC A;  4YQD A;  4YQ4 A;  1JHG A;  1UAM A;  4YQT A;  3SSX N;  4YQO A;  4YQ8 A;  4YQ2 A;  3KY7 A;  4YVI A;  4YQ9 A;  1UAK A;  1MI7 R; 
#chains in the Genus database with same CATH homology
 3FRW A;  1JHG A;  3SSW N;  1ZT9 A;  1WRT R;  1TRR A;  3SSX N;  1TRO A;  3G1C A;  1CO0 A;  3WRP A;  3KOR A;  2XDI A;  2OZ9 R;  1RCS A;  1MI7 R;  1WRP R;  1WRS R; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...