1RCSA

Nmr study of trp repressor-operator dna complex
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
104
structure length
104
Chain Sequence
QSPYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLLKS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The solution structures of the trp repressor-operator DNA complex.
pubmed doi rcsb
molecule tags Transcription/dna
molecule keywords DNA (5'-D(*CP*GP*TP*AP*CP*TP*AP*GP*TP*TP*AP*AP*CP*TP*AP*GP*T
total genus 19
structure length 104
sequence length 104
chains with identical sequence B
ec nomenclature
pdb deposition date 1995-05-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01371 Trp_repressor Trp repressor protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.10 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A TrpR-like 1rcsA00
1WRSR 1JHGA 1CO0A 2XDIA 3G1CA 3KORA 1TRRA 1WRTR 3FRWA 1WRPR 3SSWN 3WRPA 3SSXN 1RCSA 2OZ9R 1TROA 1MI7R 1ZT9A
chains in the Genus database with same CATH superfamily
4YQBA 4YQCA 3KY7A 3KNUA 4YQ3A 3KORA 4YPWA 4MCBA 4YVIA 4YQTA 4YQJA 4YQDA 4YQLA 3WRPA 1UAJA 4H3ZA 1OY5A 1RCSA 1UAKA 1MI7R 3QUVA 4YQRA 3FRWA 4YVGA 4H3YA 4YQ8A 4YQ2A 4IG6A 4YQ9A 4YQ7A 4MCDA 4YQIA 1ZT9A 1WRSR 5D9FA 4YQ5A 4YVKA 3G1CA 1UAMA 4YPYA 4YQOA 4YQ1A 3AXZA 1WRTR 3IEFA 4YQSA 4YQQA 4YQAA 3SSXN 2OZ9R 4YQNA 4YQ4A 1JHGA 1CO0A 2XDIA 4YPZA 1TRRA 4YQPA 1P9PA 1UALA 1WRPR 4YQ6A 3SSWN 4YQGA 4YVHA 4YQ0A 4YQKA 4YVJA 4MCCA 4YPXA 1TROA
chains in the Genus database with same CATH topology
1WRSR 1JHGA 1CO0A 2XDIA 3G1CA 3KORA 1TRRA 1WRTR 3FRWA 1WRPR 3SSWN 3WRPA 3SSXN 1RCSA 2OZ9R 1TROA 1MI7R 1ZT9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WRS R;  1JHG A;  1CO0 A;  2XDI A;  3G1C A;  3KOR A;  1TRR A;  1WRT R;  3FRW A;  1WRP R;  3SSW N;  3WRP A;  3SSX N;  1RCS A;  2OZ9 R;  1TRO A;  1MI7 R;  1ZT9 A; 
#chains in the Genus database with same CATH topology
 4YQB A;  4YQC A;  3KY7 A;  3KNU A;  4YQ3 A;  3KOR A;  4YPW A;  4MCB A;  4YVI A;  4YQT A;  4YQJ A;  4YQD A;  4YQL A;  3WRP A;  1UAJ A;  4H3Z A;  1OY5 A;  1RCS A;  1UAK A;  1MI7 R;  3QUV A;  4YQR A;  3FRW A;  4YVG A;  4H3Y A;  4YQ8 A;  4YQ2 A;  4IG6 A;  4YQ9 A;  4YQ7 A;  4MCD A;  4YQI A;  1ZT9 A;  1WRS R;  5D9F A;  4YQ5 A;  4YVK A;  3G1C A;  1UAM A;  4YPY A;  4YQO A;  4YQ1 A;  3AXZ A;  1WRT R;  3IEF A;  4YQS A;  4YQQ A;  4YQA A;  3SSX N;  2OZ9 R;  4YQN A;  4YQ4 A;  1JHG A;  1CO0 A;  2XDI A;  4YPZ A;  1TRR A;  4YQP A;  1P9P A;  1UAL A;  1WRP R;  4YQ6 A;  3SSW N;  4YQG A;  4YVH A;  4YQ0 A;  4YQK A;  4YVJ A;  4MCC A;  4YPX A;  1TRO A; 
#chains in the Genus database with same CATH homology
 1WRS R;  1JHG A;  1CO0 A;  2XDI A;  3G1C A;  3KOR A;  1TRR A;  1WRT R;  3FRW A;  1WRP R;  3SSW N;  3WRP A;  3SSX N;  1RCS A;  2OZ9 R;  1TRO A;  1MI7 R;  1ZT9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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