1TRRA

Tandem binding in crystals of a trp repressor/operator half-site complex
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
104
structure length
104
Chain Sequence
AQQSPYSAAMAEQRHEEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Tandem binding in crystals of a trp repressor/operator half-site complex.
pubmed doi rcsb
molecule tags Transcription/dna
molecule keywords DNA (5'-D(*AP*GP*CP*GP*TP*AP*CP*TP*AP*GP*TP*AP*CP*GP*CP*T)-3
total genus 34
structure length 104
sequence length 104
chains with identical sequence B, D, E, G, H, J, K
ec nomenclature
pdb deposition date 1993-10-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01371 Trp_repressor Trp repressor protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.10 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A TrpR-like 1trrA00
1WRPR 3WRPA 1CO0A 2XDIA 1TROA 1JHGA 1WRTR 3KORA 1RCSA 3FRWA 3SSXN 3G1CA 3SSWN 1WRSR 1TRRA 1ZT9A 2OZ9R 1MI7R
chains in the Genus database with same CATH superfamily
4YQCA 1CO0A 2XDIA 4MCCA 3QUVA 4YVKA 1WRTR 4YQPA 4YQ3A 4YQ4A 1UALA 4YQDA 3KY7A 4YQKA 3SSWN 4YQAA 4YVJA 4MCDA 4YVGA 4YQ8A 4YQ5A 4YQ6A 4YQQA 1UAMA 4H3YA 4YVIA 1WRSR 3KNUA 1TRRA 1ZT9A 3G1CA 1WRPR 1UAKA 5D9FA 3WRPA 4YQIA 4YQJA 4YPXA 4YQNA 3KORA 4H3ZA 3FRWA 4YPWA 3AXZA 4YQGA 4YQ1A 4YQ7A 4YQRA 4YQBA 1MI7R 1UAJA 4YQLA 1OY5A 1TROA 1JHGA 4MCBA 4IG6A 4YQSA 1RCSA 4YPYA 3SSXN 4YQ0A 4YVHA 4YQOA 4YQ9A 3IEFA 4YQTA 4YQ2A 1P9PA 2OZ9R 4YPZA
chains in the Genus database with same CATH topology
1WRPR 3WRPA 1CO0A 2XDIA 1TROA 1JHGA 1WRTR 3KORA 1RCSA 3FRWA 3SSXN 3G1CA 3SSWN 1WRSR 1TRRA 1ZT9A 2OZ9R 1MI7R
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WRP R;  3WRP A;  1CO0 A;  2XDI A;  1TRO A;  1JHG A;  1WRT R;  3KOR A;  1RCS A;  3FRW A;  3SSX N;  3G1C A;  3SSW N;  1WRS R;  1TRR A;  1ZT9 A;  2OZ9 R;  1MI7 R; 
#chains in the Genus database with same CATH topology
 4YQC A;  1CO0 A;  2XDI A;  4MCC A;  3QUV A;  4YVK A;  1WRT R;  4YQP A;  4YQ3 A;  4YQ4 A;  1UAL A;  4YQD A;  3KY7 A;  4YQK A;  3SSW N;  4YQA A;  4YVJ A;  4MCD A;  4YVG A;  4YQ8 A;  4YQ5 A;  4YQ6 A;  4YQQ A;  1UAM A;  4H3Y A;  4YVI A;  1WRS R;  3KNU A;  1TRR A;  1ZT9 A;  3G1C A;  1WRP R;  1UAK A;  5D9F A;  3WRP A;  4YQI A;  4YQJ A;  4YPX A;  4YQN A;  3KOR A;  4H3Z A;  3FRW A;  4YPW A;  3AXZ A;  4YQG A;  4YQ1 A;  4YQ7 A;  4YQR A;  4YQB A;  1MI7 R;  1UAJ A;  4YQL A;  1OY5 A;  1TRO A;  1JHG A;  4MCB A;  4IG6 A;  4YQS A;  1RCS A;  4YPY A;  3SSX N;  4YQ0 A;  4YVH A;  4YQO A;  4YQ9 A;  3IEF A;  4YQT A;  4YQ2 A;  1P9P A;  2OZ9 R;  4YPZ A; 
#chains in the Genus database with same CATH homology
 1WRP R;  3WRP A;  1CO0 A;  2XDI A;  1TRO A;  1JHG A;  1WRT R;  3KOR A;  1RCS A;  3FRW A;  3SSX N;  3G1C A;  3SSW N;  1WRS R;  1TRR A;  1ZT9 A;  2OZ9 R;  1MI7 R; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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