2K3NA

Solution structure of the type 1 repetitive domain (tusp1-rp1) of the egg case silk from nephila antipodiana
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
160
structure length
160
Chain Sequence
SGATSQAASQSASSSYSSAFAQAASSALATSSAISRAFASVSSASAASSLAYNIGLSAARSLGIASDTALAGALAQAVGGVGAGASASAYANAIARAAGQFLATQGVLNAGNASALAGSFARALSASAESQSFAQSQAYQQASAFQQAAAQSAAQSASRA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords TuSp1
publication title Solution structure of eggcase silk protein and its implications for silk fiber formation
pubmed doi rcsb
source organism Nephila antipodiana
molecule tags Structural protein
total genus 40
structure length 160
sequence length 160
ec nomenclature
pdb deposition date 2008-05-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.60 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Enzyme I; Chain A, domain 2 2k3nA00
2K3NA 2LYIA 2MQAA 2K3OA
chains in the Genus database with same CATH superfamily
2MQAA 3GTJA 4C5SA 2K3OA 1ZYRD 1T6JA 1IW7D 2YIIA 4V2RA 1I3QA 2JA5A 4BABA 2FIPA 4C2MA 3U44A 3GTOA 2A68D 3U4QA 3GTKA 2LTHA 1T6PA 2X0QA 4C5RA 2N3EA 1I6VD 2JA6A 2MX9A 2R92A 1WCMA 1TWAA 2NVYA 3LR8A 2O5JD 4BAAA 1Y1WA 1TWCA 2JA7A 2N1DB 1SMYD 2A69D 3EZBA 1HQMD 1I50A 2F5JA 2X0OA 1K83A 2AQLA 2LKMB 1W27A 3CQZA 2LYIA 1R9TA 2Y0NA 2VUMA 2YU9A 2CW0D 1YNJD 3LR6A 4C6GA 2X0PA 2MX8A 1TWHA 3EZAA 2NVXA 4QIWA 2B63A 1ZYMA 3GTPA 3LR2A 1EZBA 4V2QA 4CQ5A 2E2IA 2BE5D 3GTLA 2EZCA 1SFOA 1EZAA 4CEJA 3FKIA 2E2HA 1YNND 4CEHA 2EZAA 2FIOA 2HROA 2EZBA 2R7ZA 3EZEA 2HWGA 4CEIA 3GTQA 3GTMA 2A6HD 4C5UA 1TWGA 5IZ2A 2R93A 2K3NA 3NZ4A 1TWFA 4FBSA 2A6ED 2LPJA 3GTGA 3LRDA 1Y1VA 2K3QA 2VK9A 3H0GA 1Y2MA 2MP0A 2LPIA
chains in the Genus database with same CATH topology
2MQAA 3GTJA 2K3OA 1ZYRD 1IW7D 1I3QA 2JA5A 2FIPA 4C2MA 3U44A 3GTOA 2A68D 3U4QA 3GTKA 2LTHA 2X0QA 2N3EA 1I6VD 2JA6A 2MX9A 2R92A 1WCMA 1TWAA 2NVYA 3LR8A 2O5JD 1Y1WA 1TWCA 2JA7A 2N1DB 1SMYD 2A69D 1HQMD 1I50A 2F5JA 2X0OA 1K83A 2AQLA 2LKMB 3CQZA 2LYIA 1R9TA 2Y0NA 2VUMA 2YU9A 2CW0D 1YNJD 3LR6A 2X0PA 2MX8A 1TWHA 2NVXA 4QIWA 2B63A 3GTPA 3LR2A 2E2IA 2BE5D 3GTLA 1SFOA 4CEJA 3FKIA 2E2HA 1YNND 4CEHA 2FIOA 2R7ZA 4CEIA 3GTQA 3GTMA 2A6HD 1TWGA 5IZ2A 2R93A 2K3NA 1TWFA 4FBSA 2A6ED 2LPJA 3GTGA 3LRDA 1Y1VA 2K3QA 2VK9A 3H0GA 2LPIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2K3N A;  2LYI A;  2MQA A;  2K3O A; 
#chains in the Genus database with same CATH topology
 2MQA A;  3GTJ A;  4C5S A;  2K3O A;  1ZYR D;  1T6J A;  1IW7 D;  2YII A;  4V2R A;  1I3Q A;  2JA5 A;  4BAB A;  2FIP A;  4C2M A;  3U44 A;  3GTO A;  2A68 D;  3U4Q A;  3GTK A;  2LTH A;  1T6P A;  2X0Q A;  4C5R A;  2N3E A;  1I6V D;  2JA6 A;  2MX9 A;  2R92 A;  1WCM A;  1TWA A;  2NVY A;  3LR8 A;  2O5J D;  4BAA A;  1Y1W A;  1TWC A;  2JA7 A;  2N1D B;  1SMY D;  2A69 D;  3EZB A;  1HQM D;  1I50 A;  2F5J A;  2X0O A;  1K83 A;  2AQL A;  2LKM B;  1W27 A;  3CQZ A;  2LYI A;  1R9T A;  2Y0N A;  2VUM A;  2YU9 A;  2CW0 D;  1YNJ D;  3LR6 A;  4C6G A;  2X0P A;  2MX8 A;  1TWH A;  3EZA A;  2NVX A;  4QIW A;  2B63 A;  1ZYM A;  3GTP A;  3LR2 A;  1EZB A;  4V2Q A;  4CQ5 A;  2E2I A;  2BE5 D;  3GTL A;  2EZC A;  1SFO A;  1EZA A;  4CEJ A;  3FKI A;  2E2H A;  1YNN D;  4CEH A;  2EZA A;  2FIO A;  2HRO A;  2EZB A;  2R7Z A;  3EZE A;  2HWG A;  4CEI A;  3GTQ A;  3GTM A;  2A6H D;  4C5U A;  1TWG A;  5IZ2 A;  2R93 A;  2K3N A;  3NZ4 A;  1TWF A;  4FBS A;  2A6E D;  2LPJ A;  3GTG A;  3LRD A;  1Y1V A;  2K3Q A;  2VK9 A;  3H0G A;  1Y2M A;  2MP0 A;  2LPI A; 
#chains in the Genus database with same CATH homology
 2MQA A;  3GTJ A;  2K3O A;  1ZYR D;  1IW7 D;  1I3Q A;  2JA5 A;  2FIP A;  4C2M A;  3U44 A;  3GTO A;  2A68 D;  3U4Q A;  3GTK A;  2LTH A;  2X0Q A;  2N3E A;  1I6V D;  2JA6 A;  2MX9 A;  2R92 A;  1WCM A;  1TWA A;  2NVY A;  3LR8 A;  2O5J D;  1Y1W A;  1TWC A;  2JA7 A;  2N1D B;  1SMY D;  2A69 D;  1HQM D;  1I50 A;  2F5J A;  2X0O A;  1K83 A;  2AQL A;  2LKM B;  3CQZ A;  2LYI A;  1R9T A;  2Y0N A;  2VUM A;  2YU9 A;  2CW0 D;  1YNJ D;  3LR6 A;  2X0P A;  2MX8 A;  1TWH A;  2NVX A;  4QIW A;  2B63 A;  3GTP A;  3LR2 A;  2E2I A;  2BE5 D;  3GTL A;  1SFO A;  4CEJ A;  3FKI A;  2E2H A;  1YNN D;  4CEH A;  2FIO A;  2R7Z A;  4CEI A;  3GTQ A;  3GTM A;  2A6H D;  1TWG A;  5IZ2 A;  2R93 A;  2K3N A;  1TWF A;  4FBS A;  2A6E D;  2LPJ A;  3GTG A;  3LRD A;  1Y1V A;  2K3Q A;  2VK9 A;  3H0G A;  2LPI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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