2K3NA

Solution structure of the type 1 repetitive domain (tusp1-rp1) of the egg case silk from nephila antipodiana
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
160
structure length
160
Chain Sequence
SGATSQAASQSASSSYSSAFAQAASSALATSSAISRAFASVSSASAASSLAYNIGLSAARSLGIASDTALAGALAQAVGGVGAGASASAYANAIARAAGQFLATQGVLNAGNASALAGSFARALSASAESQSFAQSQAYQQASAFQQAAAQSAAQSASRA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords TuSp1
publication title Solution structure of eggcase silk protein and its implications for silk fiber formation
pubmed doi rcsb
source organism Nephila antipodiana
total genus 40
structure length 160
sequence length 160
ec nomenclature
pdb deposition date 2008-05-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.60 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Enzyme I; Chain A, domain 2 2k3nA00
2K3NA 2MQAA 2K3OA 2LYIA
chains in the Genus database with same CATH superfamily
1Y1WA 3LR8A 2LKMB 2X0PA 2MP0A 3H0GA 1ZYRD 4CQ5A 4FBSA 2NVXA 3GTOA 1K83A 2A6HD 1SFOA 2FIPA 2K3NA 3GTGA 1TWHA 2EZAA 4BABA 3U44A 4CEIA 1I6VD 1IW7D 4C6GA 3GTPA 4QIWA 2JA7A 3U4QA 2LPJA 2X0OA 1EZBA 1SMYD 4C2MA 2N3EA 2B63A 3LRDA 3LR6A 1TWFA 1Y1VA 1R9TA 2E2IA 1YNJD 2R92A 2EZBA 2HROA 2A68D 2F5JA 2N1DB 1I50A 2LTHA 1ZYMA 2LYIA 2Y0NA 2YU9A 2R93A 2AQLA 3EZAA 1YNND 2JA6A 2NVYA 2JA5A 1I3QA 1TWGA 2R7ZA 4BAAA 1T6PA 3GTJA 2MX8A 2MQAA 2A69D 3EZBA 2K3OA 3GTKA 3GTMA 1HQMD 4C5UA 1WCMA 1TWCA 2BE5D 2E2HA 1W27A 2CW0D 2LPIA 1T6JA 2O5JD 3LR2A 2VK9A 3EZEA 4V2QA 4CEHA 2VUMA 3GTQA 4V2RA 4C5RA 2X0QA 3CQZA 3FKIA 5IZ2A 2K3QA 4CEJA 2EZCA 2YIIA 1Y2MA 2HWGA 2A6ED 2FIOA 2MX9A 3NZ4A 1EZAA 1TWAA 4C5SA 3GTLA
chains in the Genus database with same CATH topology
1Y1WA 3LR8A 2LKMB 2X0PA 3H0GA 1ZYRD 4FBSA 2NVXA 3GTOA 1K83A 2A6HD 1SFOA 2FIPA 2K3NA 3GTGA 1TWHA 3U44A 4CEIA 1I6VD 1IW7D 3GTPA 4QIWA 2JA7A 3U4QA 2LPJA 2X0OA 1SMYD 4C2MA 2N3EA 2B63A 3LRDA 3LR6A 1TWFA 1Y1VA 1R9TA 2E2IA 1YNJD 2R92A 2A68D 2F5JA 2N1DB 1I50A 2LTHA 2LYIA 2Y0NA 2YU9A 2R93A 2AQLA 1YNND 2JA6A 2NVYA 2JA5A 1I3QA 1TWGA 2R7ZA 3GTJA 2MX8A 2MQAA 2A69D 2K3OA 3GTKA 3GTMA 1HQMD 1WCMA 1TWCA 2BE5D 2E2HA 2CW0D 2LPIA 2O5JD 3LR2A 2VK9A 4CEHA 2VUMA 3GTQA 2X0QA 3CQZA 3FKIA 5IZ2A 2K3QA 4CEJA 2A6ED 2FIOA 2MX9A 1TWAA 3GTLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2K3N A;  2MQA A;  2K3O A;  2LYI A; 
#chains in the Genus database with same CATH topology
 1Y1W A;  3LR8 A;  2LKM B;  2X0P A;  2MP0 A;  3H0G A;  1ZYR D;  4CQ5 A;  4FBS A;  2NVX A;  3GTO A;  1K83 A;  2A6H D;  1SFO A;  2FIP A;  2K3N A;  3GTG A;  1TWH A;  2EZA A;  4BAB A;  3U44 A;  4CEI A;  1I6V D;  1IW7 D;  4C6G A;  3GTP A;  4QIW A;  2JA7 A;  3U4Q A;  2LPJ A;  2X0O A;  1EZB A;  1SMY D;  4C2M A;  2N3E A;  2B63 A;  3LRD A;  3LR6 A;  1TWF A;  1Y1V A;  1R9T A;  2E2I A;  1YNJ D;  2R92 A;  2EZB A;  2HRO A;  2A68 D;  2F5J A;  2N1D B;  1I50 A;  2LTH A;  1ZYM A;  2LYI A;  2Y0N A;  2YU9 A;  2R93 A;  2AQL A;  3EZA A;  1YNN D;  2JA6 A;  2NVY A;  2JA5 A;  1I3Q A;  1TWG A;  2R7Z A;  4BAA A;  1T6P A;  3GTJ A;  2MX8 A;  2MQA A;  2A69 D;  3EZB A;  2K3O A;  3GTK A;  3GTM A;  1HQM D;  4C5U A;  1WCM A;  1TWC A;  2BE5 D;  2E2H A;  1W27 A;  2CW0 D;  2LPI A;  1T6J A;  2O5J D;  3LR2 A;  2VK9 A;  3EZE A;  4V2Q A;  4CEH A;  2VUM A;  3GTQ A;  4V2R A;  4C5R A;  2X0Q A;  3CQZ A;  3FKI A;  5IZ2 A;  2K3Q A;  4CEJ A;  2EZC A;  2YII A;  1Y2M A;  2HWG A;  2A6E D;  2FIO A;  2MX9 A;  3NZ4 A;  1EZA A;  1TWA A;  4C5S A;  3GTL A; 
#chains in the Genus database with same CATH homology
 1Y1W A;  3LR8 A;  2LKM B;  2X0P A;  3H0G A;  1ZYR D;  4FBS A;  2NVX A;  3GTO A;  1K83 A;  2A6H D;  1SFO A;  2FIP A;  2K3N A;  3GTG A;  1TWH A;  3U44 A;  4CEI A;  1I6V D;  1IW7 D;  3GTP A;  4QIW A;  2JA7 A;  3U4Q A;  2LPJ A;  2X0O A;  1SMY D;  4C2M A;  2N3E A;  2B63 A;  3LRD A;  3LR6 A;  1TWF A;  1Y1V A;  1R9T A;  2E2I A;  1YNJ D;  2R92 A;  2A68 D;  2F5J A;  2N1D B;  1I50 A;  2LTH A;  2LYI A;  2Y0N A;  2YU9 A;  2R93 A;  2AQL A;  1YNN D;  2JA6 A;  2NVY A;  2JA5 A;  1I3Q A;  1TWG A;  2R7Z A;  3GTJ A;  2MX8 A;  2MQA A;  2A69 D;  2K3O A;  3GTK A;  3GTM A;  1HQM D;  1WCM A;  1TWC A;  2BE5 D;  2E2H A;  2CW0 D;  2LPI A;  2O5J D;  3LR2 A;  2VK9 A;  4CEH A;  2VUM A;  3GTQ A;  2X0Q A;  3CQZ A;  3FKI A;  5IZ2 A;  2K3Q A;  4CEJ A;  2A6E D;  2FIO A;  2MX9 A;  1TWA A;  3GTL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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