2K3NA

Solution structure of the type 1 repetitive domain (tusp1-rp1) of the egg case silk from nephila antipodiana
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
160
structure length
160
Chain Sequence
SGATSQAASQSASSSYSSAFAQAASSALATSSAISRAFASVSSASAASSLAYNIGLSAARSLGIASDTALAGALAQAVGGVGAGASASAYANAIARAAGQFLATQGVLNAGNASALAGSFARALSASAESQSFAQSQAYQQASAFQQAAAQSAAQSASRA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords TuSp1
publication title Solution structure of eggcase silk protein and its implications for silk fiber formation
pubmed doi rcsb
source organism Nephila antipodiana
total genus 40
structure length 160
sequence length 160
ec nomenclature
pdb deposition date 2008-05-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.60 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Enzyme I; Chain A, domain 2 2k3nA00
2LYIA 2K3OA 2K3NA 2MQAA
chains in the Genus database with same CATH superfamily
2K3NA 2A6HD 2YIIA 4CEHA 2FIOA 1EZBA 2BE5D 3GTPA 3U44A 2EZCA 2E2HA 2LPJA 2VUMA 1Y2MA 2A69D 1Y1VA 2R92A 1I6VD 3LR8A 4C5SA 4BAAA 1R9TA 2B63A 1WCMA 3GTQA 1W27A 3EZBA 2A6ED 1TWAA 2LYIA 2Y0NA 3GTGA 4V2QA 1TWFA 2O5JD 3GTKA 1TWGA 2LTHA 1IW7D 4QIWA 2F5JA 2JA6A 3FKIA 3LR6A 1K83A 1T6JA 1YNJD 2K3OA 3GTJA 1T6PA 2X0OA 2E2IA 2K3QA 3GTOA 2VK9A 3U4QA 3NZ4A 2NVXA 5IZ2A 4C2MA 2EZAA 2R7ZA 1EZAA 4C6GA 2CW0D 1ZYRD 1I3QA 2JA7A 1Y1WA 2MP0A 2LPIA 2N1DB 4CQ5A 2JA5A 3LRDA 2YU9A 4C5UA 2R93A 2X0PA 2AQLA 3H0GA 2MX9A 2X0QA 3EZEA 3EZAA 4FBSA 3LR2A 2A68D 4C5RA 1SFOA 1ZYMA 3GTMA 4V2RA 1TWCA 2HWGA 2N3EA 1I50A 2NVYA 2MQAA 4CEJA 3GTLA 4CEIA 1SMYD 1TWHA 2MX8A 4BABA 3CQZA 2EZBA 2HROA 1HQMD 1YNND 2LKMB 2FIPA
chains in the Genus database with same CATH topology
2K3NA 2A6HD 4CEHA 2FIOA 2BE5D 3GTPA 3U44A 2E2HA 2LPJA 2VUMA 2A69D 1Y1VA 2R92A 1I6VD 3LR8A 1R9TA 2B63A 1WCMA 3GTQA 1TWAA 2A6ED 2LYIA 2Y0NA 3GTGA 1TWFA 2O5JD 3GTKA 1TWGA 2LTHA 1IW7D 4QIWA 2F5JA 2JA6A 3FKIA 3LR6A 1K83A 1YNJD 2K3OA 3GTJA 2X0OA 2E2IA 2K3QA 3GTOA 2VK9A 3U4QA 2NVXA 5IZ2A 4C2MA 2R7ZA 2CW0D 1ZYRD 1I3QA 2JA7A 1Y1WA 2LPIA 2N1DB 2JA5A 3LRDA 2YU9A 2R93A 2X0PA 2AQLA 3H0GA 2MX9A 2X0QA 4FBSA 3LR2A 2A68D 1SFOA 3GTMA 1TWCA 2N3EA 1I50A 2NVYA 2MQAA 4CEJA 3GTLA 4CEIA 1SMYD 1TWHA 2MX8A 3CQZA 1HQMD 1YNND 2LKMB 2FIPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LYI A;  2K3O A;  2K3N A;  2MQA A; 
#chains in the Genus database with same CATH topology
 2K3N A;  2A6H D;  2YII A;  4CEH A;  2FIO A;  1EZB A;  2BE5 D;  3GTP A;  3U44 A;  2EZC A;  2E2H A;  2LPJ A;  2VUM A;  1Y2M A;  2A69 D;  1Y1V A;  2R92 A;  1I6V D;  3LR8 A;  4C5S A;  4BAA A;  1R9T A;  2B63 A;  1WCM A;  3GTQ A;  1W27 A;  3EZB A;  2A6E D;  1TWA A;  2LYI A;  2Y0N A;  3GTG A;  4V2Q A;  1TWF A;  2O5J D;  3GTK A;  1TWG A;  2LTH A;  1IW7 D;  4QIW A;  2F5J A;  2JA6 A;  3FKI A;  3LR6 A;  1K83 A;  1T6J A;  1YNJ D;  2K3O A;  3GTJ A;  1T6P A;  2X0O A;  2E2I A;  2K3Q A;  3GTO A;  2VK9 A;  3U4Q A;  3NZ4 A;  2NVX A;  5IZ2 A;  4C2M A;  2EZA A;  2R7Z A;  1EZA A;  4C6G A;  2CW0 D;  1ZYR D;  1I3Q A;  2JA7 A;  1Y1W A;  2MP0 A;  2LPI A;  2N1D B;  4CQ5 A;  2JA5 A;  3LRD A;  2YU9 A;  4C5U A;  2R93 A;  2X0P A;  2AQL A;  3H0G A;  2MX9 A;  2X0Q A;  3EZE A;  3EZA A;  4FBS A;  3LR2 A;  2A68 D;  4C5R A;  1SFO A;  1ZYM A;  3GTM A;  4V2R A;  1TWC A;  2HWG A;  2N3E A;  1I50 A;  2NVY A;  2MQA A;  4CEJ A;  3GTL A;  4CEI A;  1SMY D;  1TWH A;  2MX8 A;  4BAB A;  3CQZ A;  2EZB A;  2HRO A;  1HQM D;  1YNN D;  2LKM B;  2FIP A; 
#chains in the Genus database with same CATH homology
 2K3N A;  2A6H D;  4CEH A;  2FIO A;  2BE5 D;  3GTP A;  3U44 A;  2E2H A;  2LPJ A;  2VUM A;  2A69 D;  1Y1V A;  2R92 A;  1I6V D;  3LR8 A;  1R9T A;  2B63 A;  1WCM A;  3GTQ A;  1TWA A;  2A6E D;  2LYI A;  2Y0N A;  3GTG A;  1TWF A;  2O5J D;  3GTK A;  1TWG A;  2LTH A;  1IW7 D;  4QIW A;  2F5J A;  2JA6 A;  3FKI A;  3LR6 A;  1K83 A;  1YNJ D;  2K3O A;  3GTJ A;  2X0O A;  2E2I A;  2K3Q A;  3GTO A;  2VK9 A;  3U4Q A;  2NVX A;  5IZ2 A;  4C2M A;  2R7Z A;  2CW0 D;  1ZYR D;  1I3Q A;  2JA7 A;  1Y1W A;  2LPI A;  2N1D B;  2JA5 A;  3LRD A;  2YU9 A;  2R93 A;  2X0P A;  2AQL A;  3H0G A;  2MX9 A;  2X0Q A;  4FBS A;  3LR2 A;  2A68 D;  1SFO A;  3GTM A;  1TWC A;  2N3E A;  1I50 A;  2NVY A;  2MQA A;  4CEJ A;  3GTL A;  4CEI A;  1SMY D;  1TWH A;  2MX8 A;  3CQZ A;  1HQM D;  1YNN D;  2LKM B;  2FIP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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