2K3NA

Solution structure of the type 1 repetitive domain (tusp1-rp1) of the egg case silk from nephila antipodiana
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
160
structure length
160
Chain Sequence
SGATSQAASQSASSSYSSAFAQAASSALATSSAISRAFASVSSASAASSLAYNIGLSAARSLGIASDTALAGALAQAVGGVGAGASASAYANAIARAAGQFLATQGVLNAGNASALAGSFARALSASAESQSFAQSQAYQQASAFQQAAAQSAAQSASRA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution structure of eggcase silk protein and its implications for silk fiber formation
pubmed doi rcsb
source organism Nephila antipodiana
molecule tags Structural protein
molecule keywords TuSp1
total genus 40
structure length 160
sequence length 160
ec nomenclature
pdb deposition date 2008-05-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.60 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Enzyme I; Chain A, domain 2 2k3nA00
2K3OA 2MQAA 2K3NA 2LYIA
chains in the Genus database with same CATH superfamily
3LRDA 3GTQA 2LTHA 2A6HD 3U44A 3GTKA 2JA7A 1Y2MA 2MQAA 2R92A 3GTPA 2E2IA 2LPJA 3GTOA 2FIPA 2X0QA 1SFOA 2Y0NA 2VK9A 1R9TA 4CEHA 3EZAA 2N3EA 3CQZA 2HROA 4C6GA 2MP0A 1EZAA 1EZBA 1TWHA 3NZ4A 2X0PA 1TWAA 2K3OA 1YNJD 1SMYD 2LYIA 1I6VD 2JA6A 2HWGA 4CQ5A 5IZ2A 3U4QA 2R93A 1I3QA 2CW0D 2K3QA 3GTLA 2YU9A 2E2HA 4C5UA 3FKIA 4C5SA 2LPIA 2X0OA 1W27A 4C2MA 3GTGA 3EZBA 2MX9A 1T6PA 2EZBA 1K83A 3GTMA 4CEJA 2B63A 2NVXA 2A68D 2A69D 1YNND 2EZAA 2FIOA 1Y1WA 1TWGA 3GTJA 2MX8A 4V2RA 2K3NA 2N1DB 3EZEA 1T6JA 2BE5D 4CEIA 1TWFA 2JA5A 1WCMA 4V2QA 4BAAA 4QIWA 1I50A 1ZYMA 2YIIA 1IW7D 2F5JA 4BABA 3H0GA 3LR6A 2O5JD 2R7ZA 2EZCA 1HQMD 3LR8A 2LKMB 2VUMA 2AQLA 2A6ED 2NVYA 4FBSA 3LR2A 1ZYRD 4C5RA 1TWCA 1Y1VA
chains in the Genus database with same CATH topology
3LRDA 3GTQA 2LTHA 2A6HD 3U44A 3GTKA 2JA7A 2MQAA 2R92A 3GTPA 2E2IA 2LPJA 3GTOA 2FIPA 2X0QA 1SFOA 2Y0NA 2VK9A 1R9TA 4CEHA 2N3EA 3CQZA 1TWHA 2X0PA 1TWAA 2K3OA 1YNJD 1SMYD 2LYIA 1I6VD 2JA6A 5IZ2A 3U4QA 2R93A 1I3QA 2CW0D 2K3QA 3GTLA 2YU9A 2E2HA 3FKIA 2LPIA 2X0OA 4C2MA 3GTGA 2MX9A 1K83A 3GTMA 4CEJA 2B63A 2NVXA 2A68D 2A69D 1YNND 2FIOA 1Y1WA 1TWGA 3GTJA 2MX8A 2K3NA 2N1DB 2BE5D 4CEIA 1TWFA 2JA5A 1WCMA 4QIWA 1I50A 1IW7D 2F5JA 3H0GA 3LR6A 2O5JD 2R7ZA 1HQMD 3LR8A 2LKMB 2VUMA 2AQLA 2A6ED 2NVYA 4FBSA 3LR2A 1ZYRD 1TWCA 1Y1VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2K3O A;  2MQA A;  2K3N A;  2LYI A; 
#chains in the Genus database with same CATH topology
 3LRD A;  3GTQ A;  2LTH A;  2A6H D;  3U44 A;  3GTK A;  2JA7 A;  1Y2M A;  2MQA A;  2R92 A;  3GTP A;  2E2I A;  2LPJ A;  3GTO A;  2FIP A;  2X0Q A;  1SFO A;  2Y0N A;  2VK9 A;  1R9T A;  4CEH A;  3EZA A;  2N3E A;  3CQZ A;  2HRO A;  4C6G A;  2MP0 A;  1EZA A;  1EZB A;  1TWH A;  3NZ4 A;  2X0P A;  1TWA A;  2K3O A;  1YNJ D;  1SMY D;  2LYI A;  1I6V D;  2JA6 A;  2HWG A;  4CQ5 A;  5IZ2 A;  3U4Q A;  2R93 A;  1I3Q A;  2CW0 D;  2K3Q A;  3GTL A;  2YU9 A;  2E2H A;  4C5U A;  3FKI A;  4C5S A;  2LPI A;  2X0O A;  1W27 A;  4C2M A;  3GTG A;  3EZB A;  2MX9 A;  1T6P A;  2EZB A;  1K83 A;  3GTM A;  4CEJ A;  2B63 A;  2NVX A;  2A68 D;  2A69 D;  1YNN D;  2EZA A;  2FIO A;  1Y1W A;  1TWG A;  3GTJ A;  2MX8 A;  4V2R A;  2K3N A;  2N1D B;  3EZE A;  1T6J A;  2BE5 D;  4CEI A;  1TWF A;  2JA5 A;  1WCM A;  4V2Q A;  4BAA A;  4QIW A;  1I50 A;  1ZYM A;  2YII A;  1IW7 D;  2F5J A;  4BAB A;  3H0G A;  3LR6 A;  2O5J D;  2R7Z A;  2EZC A;  1HQM D;  3LR8 A;  2LKM B;  2VUM A;  2AQL A;  2A6E D;  2NVY A;  4FBS A;  3LR2 A;  1ZYR D;  4C5R A;  1TWC A;  1Y1V A; 
#chains in the Genus database with same CATH homology
 3LRD A;  3GTQ A;  2LTH A;  2A6H D;  3U44 A;  3GTK A;  2JA7 A;  2MQA A;  2R92 A;  3GTP A;  2E2I A;  2LPJ A;  3GTO A;  2FIP A;  2X0Q A;  1SFO A;  2Y0N A;  2VK9 A;  1R9T A;  4CEH A;  2N3E A;  3CQZ A;  1TWH A;  2X0P A;  1TWA A;  2K3O A;  1YNJ D;  1SMY D;  2LYI A;  1I6V D;  2JA6 A;  5IZ2 A;  3U4Q A;  2R93 A;  1I3Q A;  2CW0 D;  2K3Q A;  3GTL A;  2YU9 A;  2E2H A;  3FKI A;  2LPI A;  2X0O A;  4C2M A;  3GTG A;  2MX9 A;  1K83 A;  3GTM A;  4CEJ A;  2B63 A;  2NVX A;  2A68 D;  2A69 D;  1YNN D;  2FIO A;  1Y1W A;  1TWG A;  3GTJ A;  2MX8 A;  2K3N A;  2N1D B;  2BE5 D;  4CEI A;  1TWF A;  2JA5 A;  1WCM A;  4QIW A;  1I50 A;  1IW7 D;  2F5J A;  3H0G A;  3LR6 A;  2O5J D;  2R7Z A;  1HQM D;  3LR8 A;  2LKM B;  2VUM A;  2AQL A;  2A6E D;  2NVY A;  4FBS A;  3LR2 A;  1ZYR D;  1TWC A;  1Y1V A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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