2K3NA

Solution structure of the type 1 repetitive domain (tusp1-rp1) of the egg case silk from nephila antipodiana
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
160
structure length
160
Chain Sequence
SGATSQAASQSASSSYSSAFAQAASSALATSSAISRAFASVSSASAASSLAYNIGLSAARSLGIASDTALAGALAQAVGGVGAGASASAYANAIARAAGQFLATQGVLNAGNASALAGSFARALSASAESQSFAQSQAYQQASAFQQAAAQSAAQSASRA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords TuSp1
publication title Solution structure of eggcase silk protein and its implications for silk fiber formation
pubmed doi rcsb
source organism Nephila antipodiana
molecule tags Structural protein
total genus 40
structure length 160
sequence length 160
ec nomenclature
pdb deposition date 2008-05-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.60 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Enzyme I; Chain A, domain 2 2k3nA00
2LYIA 2K3OA 2MQAA 2K3NA
chains in the Genus database with same CATH superfamily
3LRDA 3FKIA 4C2MA 2K3OA 1TWGA 2LPIA 1SFOA 2O5JD 3CQZA 2LYIA 1YNJD 1I3QA 2FIPA 2JA6A 2R7ZA 3GTQA 1IW7D 3EZEA 5IZ2A 3LR6A 2FIOA 2VUMA 2NVXA 1ZYMA 2Y0NA 2JA5A 4C5SA 4CEHA 2A69D 1TWCA 3GTMA 2EZCA 1T6JA 4V2RA 4C6GA 3GTLA 1TWFA 4CQ5A 2X0PA 1HQMD 2E2HA 2E2IA 3NZ4A 1TWAA 2K3QA 1YNND 4V2QA 1TWHA 3EZAA 2VK9A 3U44A 2MX9A 4BAAA 1I6VD 2CW0D 2YIIA 1Y2MA 2HROA 3GTPA 2B63A 2YU9A 3GTOA 2EZAA 4QIWA 2A68D 1I50A 4C5RA 4FBSA 2LTHA 1K83A 4CEIA 1Y1VA 1W27A 1R9TA 2LKMB 2R93A 1Y1WA 1T6PA 2HWGA 4BABA 3GTJA 2NVYA 1WCMA 1SMYD 3EZBA 4CEJA 2EZBA 2A6HD 2F5JA 3H0GA 2K3NA 3U4QA 2N3EA 2A6ED 1EZBA 2JA7A 2N1DB 2X0OA 2MP0A 3LR8A 2BE5D 2R92A 3GTGA 2AQLA 1EZAA 1ZYRD 3LR2A 2LPJA 4C5UA 2X0QA 3GTKA 2MQAA 2MX8A
chains in the Genus database with same CATH topology
3LRDA 3FKIA 4C2MA 2K3OA 1TWGA 2LPIA 1SFOA 2O5JD 3CQZA 2LYIA 1YNJD 1I3QA 2FIPA 2JA6A 2R7ZA 3GTQA 1IW7D 5IZ2A 3LR6A 2VUMA 2NVXA 2Y0NA 2JA5A 4CEHA 2A69D 1TWCA 3GTMA 3GTLA 1TWFA 2X0PA 1HQMD 2E2HA 2E2IA 1TWAA 2K3QA 1YNND 1TWHA 2VK9A 3U44A 2MX9A 1I6VD 2CW0D 3GTPA 2B63A 2YU9A 3GTOA 4QIWA 2A68D 1I50A 2MX8A 4FBSA 2LTHA 1K83A 4CEIA 1Y1VA 1R9TA 2LKMB 2R93A 1Y1WA 3GTJA 2NVYA 1WCMA 1SMYD 4CEJA 2A6HD 2F5JA 3H0GA 2K3NA 3U4QA 2N3EA 2A6ED 2JA7A 2N1DB 2X0OA 3LR8A 2BE5D 2R92A 3GTGA 2AQLA 1ZYRD 3LR2A 2LPJA 2X0QA 3GTKA 2MQAA 2FIOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LYI A;  2K3O A;  2MQA A;  2K3N A; 
#chains in the Genus database with same CATH topology
 3LRD A;  3FKI A;  4C2M A;  2K3O A;  1TWG A;  2LPI A;  1SFO A;  2O5J D;  3CQZ A;  2LYI A;  1YNJ D;  1I3Q A;  2FIP A;  2JA6 A;  2R7Z A;  3GTQ A;  1IW7 D;  3EZE A;  5IZ2 A;  3LR6 A;  2FIO A;  2VUM A;  2NVX A;  1ZYM A;  2Y0N A;  2JA5 A;  4C5S A;  4CEH A;  2A69 D;  1TWC A;  3GTM A;  2EZC A;  1T6J A;  4V2R A;  4C6G A;  3GTL A;  1TWF A;  4CQ5 A;  2X0P A;  1HQM D;  2E2H A;  2E2I A;  3NZ4 A;  1TWA A;  2K3Q A;  1YNN D;  4V2Q A;  1TWH A;  3EZA A;  2VK9 A;  3U44 A;  2MX9 A;  4BAA A;  1I6V D;  2CW0 D;  2YII A;  1Y2M A;  2HRO A;  3GTP A;  2B63 A;  2YU9 A;  3GTO A;  2EZA A;  4QIW A;  2A68 D;  1I50 A;  4C5R A;  4FBS A;  2LTH A;  1K83 A;  4CEI A;  1Y1V A;  1W27 A;  1R9T A;  2LKM B;  2R93 A;  1Y1W A;  1T6P A;  2HWG A;  4BAB A;  3GTJ A;  2NVY A;  1WCM A;  1SMY D;  3EZB A;  4CEJ A;  2EZB A;  2A6H D;  2F5J A;  3H0G A;  2K3N A;  3U4Q A;  2N3E A;  2A6E D;  1EZB A;  2JA7 A;  2N1D B;  2X0O A;  2MP0 A;  3LR8 A;  2BE5 D;  2R92 A;  3GTG A;  2AQL A;  1EZA A;  1ZYR D;  3LR2 A;  2LPJ A;  4C5U A;  2X0Q A;  3GTK A;  2MQA A;  2MX8 A; 
#chains in the Genus database with same CATH homology
 3LRD A;  3FKI A;  4C2M A;  2K3O A;  1TWG A;  2LPI A;  1SFO A;  2O5J D;  3CQZ A;  2LYI A;  1YNJ D;  1I3Q A;  2FIP A;  2JA6 A;  2R7Z A;  3GTQ A;  1IW7 D;  5IZ2 A;  3LR6 A;  2VUM A;  2NVX A;  2Y0N A;  2JA5 A;  4CEH A;  2A69 D;  1TWC A;  3GTM A;  3GTL A;  1TWF A;  2X0P A;  1HQM D;  2E2H A;  2E2I A;  1TWA A;  2K3Q A;  1YNN D;  1TWH A;  2VK9 A;  3U44 A;  2MX9 A;  1I6V D;  2CW0 D;  3GTP A;  2B63 A;  2YU9 A;  3GTO A;  4QIW A;  2A68 D;  1I50 A;  2MX8 A;  4FBS A;  2LTH A;  1K83 A;  4CEI A;  1Y1V A;  1R9T A;  2LKM B;  2R93 A;  1Y1W A;  3GTJ A;  2NVY A;  1WCM A;  1SMY D;  4CEJ A;  2A6H D;  2F5J A;  3H0G A;  2K3N A;  3U4Q A;  2N3E A;  2A6E D;  2JA7 A;  2N1D B;  2X0O A;  3LR8 A;  2BE5 D;  2R92 A;  3GTG A;  2AQL A;  1ZYR D;  3LR2 A;  2LPJ A;  2X0Q A;  3GTK A;  2MQA A;  2FIO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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