2K3NA

Solution structure of the type 1 repetitive domain (tusp1-rp1) of the egg case silk from nephila antipodiana
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
160
structure length
160
Chain Sequence
SGATSQAASQSASSSYSSAFAQAASSALATSSAISRAFASVSSASAASSLAYNIGLSAARSLGIASDTALAGALAQAVGGVGAGASASAYANAIARAAGQFLATQGVLNAGNASALAGSFARALSASAESQSFAQSQAYQQASAFQQAAAQSAAQSASRA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
source organism Nephila antipodiana
publication title Solution structure of eggcase silk protein and its implications for silk fiber formation
pubmed doi rcsb
molecule keywords TuSp1
total genus 40
structure length 160
sequence length 160
ec nomenclature
pdb deposition date 2008-05-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.60 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Enzyme I; Chain A, domain 2 2k3nA00
2MQAA 2LYIA 2K3NA 2K3OA
chains in the Genus database with same CATH superfamily
2EZBA 2HWGA 1YNND 2EZCA 4C2MA 4V2QA 3GTGA 3LRDA 4V2RA 2CW0D 4C5RA 2LKMB 2X0QA 1I3QA 1YNJD 1WCMA 2JA6A 1I6VD 1W27A 1Y2MA 2VUMA 4CEIA 2VK9A 3GTMA 3LR2A 2X0OA 2A6HD 2BE5D 2N1DB 3H0GA 2MP0A 2E2IA 2F5JA 2K3OA 3GTPA 1TWAA 1TWFA 5IZ2A 1TWCA 2LYIA 2K3NA 3GTQA 1ZYRD 1K83A 2YIIA 4C5SA 3CQZA 4CEJA 3U4QA 2X0PA 2MX8A 2AQLA 3EZBA 1HQMD 4QIWA 4C5UA 3GTKA 3EZAA 2FIPA 2B63A 1T6JA 3GTLA 3GTJA 1TWHA 1I50A 1TWGA 1ZYMA 2N3EA 2JA7A 4CEHA 3LR8A 2R92A 3GTOA 2O5JD 1T6PA 1SMYD 4FBSA 2MQAA 2K3QA 2E2HA 1EZAA 2YU9A 2NVYA 1Y1WA 1Y1VA 2LTHA 3FKIA 1SFOA 3LR6A 2LPIA 2A68D 2R93A 2A6ED 2Y0NA 3EZEA 2LPJA 1R9TA 2NVXA 4CQ5A 2R7ZA 4BABA 2EZAA 3U44A 4BAAA 1IW7D 2MX9A 2JA5A 2A69D 1EZBA 2HROA 3NZ4A 2FIOA 4C6GA
chains in the Genus database with same CATH topology
1YNND 4C2MA 3GTGA 3LRDA 2CW0D 2LKMB 2X0QA 1I3QA 1YNJD 1WCMA 2JA6A 1I6VD 2VUMA 4CEIA 2VK9A 3GTMA 3LR2A 2X0OA 2A6HD 2BE5D 2N1DB 3H0GA 2E2IA 2F5JA 2K3OA 3GTPA 1TWAA 1TWFA 5IZ2A 1TWCA 2LYIA 2K3NA 3GTQA 1ZYRD 1K83A 3CQZA 4CEJA 3U4QA 2X0PA 2MX8A 2AQLA 1HQMD 4QIWA 3GTKA 2FIPA 2B63A 3GTLA 3GTJA 1TWHA 1I50A 1TWGA 2N3EA 2JA7A 4CEHA 3LR8A 2R92A 3GTOA 2O5JD 1SMYD 4FBSA 2MQAA 2K3QA 2E2HA 2YU9A 2NVYA 1Y1WA 1Y1VA 2LTHA 3FKIA 1SFOA 3LR6A 2LPIA 2A68D 2R93A 2A6ED 2Y0NA 2LPJA 1R9TA 2NVXA 2R7ZA 3U44A 1IW7D 2MX9A 2JA5A 2A69D 2FIOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2MQA A;  2LYI A;  2K3N A;  2K3O A; 
#chains in the Genus database with same CATH topology
 2EZB A;  2HWG A;  1YNN D;  2EZC A;  4C2M A;  4V2Q A;  3GTG A;  3LRD A;  4V2R A;  2CW0 D;  4C5R A;  2LKM B;  2X0Q A;  1I3Q A;  1YNJ D;  1WCM A;  2JA6 A;  1I6V D;  1W27 A;  1Y2M A;  2VUM A;  4CEI A;  2VK9 A;  3GTM A;  3LR2 A;  2X0O A;  2A6H D;  2BE5 D;  2N1D B;  3H0G A;  2MP0 A;  2E2I A;  2F5J A;  2K3O A;  3GTP A;  1TWA A;  1TWF A;  5IZ2 A;  1TWC A;  2LYI A;  2K3N A;  3GTQ A;  1ZYR D;  1K83 A;  2YII A;  4C5S A;  3CQZ A;  4CEJ A;  3U4Q A;  2X0P A;  2MX8 A;  2AQL A;  3EZB A;  1HQM D;  4QIW A;  4C5U A;  3GTK A;  3EZA A;  2FIP A;  2B63 A;  1T6J A;  3GTL A;  3GTJ A;  1TWH A;  1I50 A;  1TWG A;  1ZYM A;  2N3E A;  2JA7 A;  4CEH A;  3LR8 A;  2R92 A;  3GTO A;  2O5J D;  1T6P A;  1SMY D;  4FBS A;  2MQA A;  2K3Q A;  2E2H A;  1EZA A;  2YU9 A;  2NVY A;  1Y1W A;  1Y1V A;  2LTH A;  3FKI A;  1SFO A;  3LR6 A;  2LPI A;  2A68 D;  2R93 A;  2A6E D;  2Y0N A;  3EZE A;  2LPJ A;  1R9T A;  2NVX A;  4CQ5 A;  2R7Z A;  4BAB A;  2EZA A;  3U44 A;  4BAA A;  1IW7 D;  2MX9 A;  2JA5 A;  2A69 D;  1EZB A;  2HRO A;  3NZ4 A;  2FIO A;  4C6G A; 
#chains in the Genus database with same CATH homology
 1YNN D;  4C2M A;  3GTG A;  3LRD A;  2CW0 D;  2LKM B;  2X0Q A;  1I3Q A;  1YNJ D;  1WCM A;  2JA6 A;  1I6V D;  2VUM A;  4CEI A;  2VK9 A;  3GTM A;  3LR2 A;  2X0O A;  2A6H D;  2BE5 D;  2N1D B;  3H0G A;  2E2I A;  2F5J A;  2K3O A;  3GTP A;  1TWA A;  1TWF A;  5IZ2 A;  1TWC A;  2LYI A;  2K3N A;  3GTQ A;  1ZYR D;  1K83 A;  3CQZ A;  4CEJ A;  3U4Q A;  2X0P A;  2MX8 A;  2AQL A;  1HQM D;  4QIW A;  3GTK A;  2FIP A;  2B63 A;  3GTL A;  3GTJ A;  1TWH A;  1I50 A;  1TWG A;  2N3E A;  2JA7 A;  4CEH A;  3LR8 A;  2R92 A;  3GTO A;  2O5J D;  1SMY D;  4FBS A;  2MQA A;  2K3Q A;  2E2H A;  2YU9 A;  2NVY A;  1Y1W A;  1Y1V A;  2LTH A;  3FKI A;  1SFO A;  3LR6 A;  2LPI A;  2A68 D;  2R93 A;  2A6E D;  2Y0N A;  2LPJ A;  1R9T A;  2NVX A;  2R7Z A;  3U44 A;  1IW7 D;  2MX9 A;  2JA5 A;  2A69 D;  2FIO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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