2MX8A

Nmr structure of n-terminal domain from a. ventricosus minor ampullate spidroin (misp) at ph 7.2
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
133
structure length
133
Chain Sequence
GSGNSQPIWTNPNAAMTMTNNLVQCASRSGVLTADQMDDMGMMADSVNSQMQKMGPNPPQHRLRAMNTAMAAEVAEVVATSPPQSYSAVLNTIGACLRESMMQATGSVDNAFTNEVMQLVKMLSADSANEVST
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords Minor ampullate spidroin
publication title Diversified Structural Basis of a Conserved Molecular Mechanism for pH-Dependent Dimerization in Spider Silk N-Terminal Domains.
pubmed doi rcsb
source organism Araneus ventricosus
total genus 43
structure length 133
sequence length 133
ec nomenclature
pdb deposition date 2014-12-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16763 Spidroin_N Major ampullate spidroin 1, spider silk protein 1, N-term
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.70 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Enzyme I; Chain A, domain 2 2mx8A01
2MX9A 2LPIA 3LRDA 5IZ2A 2LPJA 3LR2A 3LR8A 4FBSA 2K3QA 2MX8A 2N3EA 3LR6A 2LTHA
chains in the Genus database with same CATH superfamily
2MX9A 3LR2A 4CEJA 2CW0D 1T6PA 3GTGA 3H0GA 2E2IA 2EZBA 2LPIA 2VUMA 3EZBA 4CQ5A 2N3EA 3GTLA 2X0QA 3FKIA 2LPJA 3EZEA 1IW7D 2LKMB 2R7ZA 3LR6A 1TWAA 4FBSA 1YNJD 3CQZA 2VK9A 1ZYMA 5IZ2A 1Y1VA 1I50A 2EZCA 2A69D 4C5UA 3U4QA 1W27A 1TWHA 3LR8A 1R9TA 4CEHA 3GTQA 2EZAA 2B63A 1TWFA 2HROA 2MQAA 1EZBA 2YU9A 2BE5D 2X0PA 1TWGA 3LRDA 2FIPA 3GTKA 2E2HA 1WCMA 4V2RA 2AQLA 3GTOA 3GTPA 1ZYRD 1YNND 3EZAA 1EZAA 2A6HD 2A68D 4BABA 1Y2MA 2NVXA 1SMYD 1I3QA 2Y0NA 4CEIA 4QIWA 3NZ4A 2K3QA 3U44A 2MX8A 4V2QA 2JA5A 1SFOA 4C5RA 2X0OA 2A6ED 2MP0A 2R92A 4C6GA 1K83A 1I6VD 2O5JD 2JA7A 2LYIA 1TWCA 1HQMD 2K3NA 4C2MA 3GTJA 2YIIA 2F5JA 2FIOA 4C5SA 2N1DB 2HWGA 2LTHA 2NVYA 3GTMA 2JA6A 1T6JA 1Y1WA 4BAAA 2R93A 2K3OA
chains in the Genus database with same CATH topology
2MX9A 3LR2A 4CEJA 2CW0D 3GTGA 3H0GA 2E2IA 2LPIA 2VUMA 2N3EA 3GTLA 2X0QA 3FKIA 2LPJA 1IW7D 2LKMB 2R7ZA 3LR6A 1TWAA 4FBSA 1YNJD 3CQZA 2VK9A 5IZ2A 1Y1VA 1I50A 2A69D 3U4QA 1TWHA 3LR8A 1R9TA 4CEHA 3GTQA 2B63A 1TWFA 2MQAA 2YU9A 2BE5D 2X0PA 1TWGA 3LRDA 2FIPA 3GTKA 2E2HA 1WCMA 2AQLA 3GTOA 3GTPA 1ZYRD 1YNND 2A6HD 2A68D 2NVXA 1SMYD 1I3QA 2Y0NA 4CEIA 4QIWA 2K3QA 3U44A 2MX8A 2JA5A 1SFOA 2X0OA 2A6ED 2R92A 1K83A 1I6VD 2O5JD 2JA7A 2LYIA 1TWCA 1HQMD 2K3NA 4C2MA 3GTJA 2F5JA 2FIOA 2N1DB 2LTHA 2NVYA 3GTMA 2JA6A 1Y1WA 2R93A 2K3OA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2MX9 A;  2LPI A;  3LRD A;  5IZ2 A;  2LPJ A;  3LR2 A;  3LR8 A;  4FBS A;  2K3Q A;  2MX8 A;  2N3E A;  3LR6 A;  2LTH A; 
#chains in the Genus database with same CATH topology
 2MX9 A;  3LR2 A;  4CEJ A;  2CW0 D;  1T6P A;  3GTG A;  3H0G A;  2E2I A;  2EZB A;  2LPI A;  2VUM A;  3EZB A;  4CQ5 A;  2N3E A;  3GTL A;  2X0Q A;  3FKI A;  2LPJ A;  3EZE A;  1IW7 D;  2LKM B;  2R7Z A;  3LR6 A;  1TWA A;  4FBS A;  1YNJ D;  3CQZ A;  2VK9 A;  1ZYM A;  5IZ2 A;  1Y1V A;  1I50 A;  2EZC A;  2A69 D;  4C5U A;  3U4Q A;  1W27 A;  1TWH A;  3LR8 A;  1R9T A;  4CEH A;  3GTQ A;  2EZA A;  2B63 A;  1TWF A;  2HRO A;  2MQA A;  1EZB A;  2YU9 A;  2BE5 D;  2X0P A;  1TWG A;  3LRD A;  2FIP A;  3GTK A;  2E2H A;  1WCM A;  4V2R A;  2AQL A;  3GTO A;  3GTP A;  1ZYR D;  1YNN D;  3EZA A;  1EZA A;  2A6H D;  2A68 D;  4BAB A;  1Y2M A;  2NVX A;  1SMY D;  1I3Q A;  2Y0N A;  4CEI A;  4QIW A;  3NZ4 A;  2K3Q A;  3U44 A;  2MX8 A;  4V2Q A;  2JA5 A;  1SFO A;  4C5R A;  2X0O A;  2A6E D;  2MP0 A;  2R92 A;  4C6G A;  1K83 A;  1I6V D;  2O5J D;  2JA7 A;  2LYI A;  1TWC A;  1HQM D;  2K3N A;  4C2M A;  3GTJ A;  2YII A;  2F5J A;  2FIO A;  4C5S A;  2N1D B;  2HWG A;  2LTH A;  2NVY A;  3GTM A;  2JA6 A;  1T6J A;  1Y1W A;  4BAA A;  2R93 A;  2K3O A; 
#chains in the Genus database with same CATH homology
 2MX9 A;  3LR2 A;  4CEJ A;  2CW0 D;  3GTG A;  3H0G A;  2E2I A;  2LPI A;  2VUM A;  2N3E A;  3GTL A;  2X0Q A;  3FKI A;  2LPJ A;  1IW7 D;  2LKM B;  2R7Z A;  3LR6 A;  1TWA A;  4FBS A;  1YNJ D;  3CQZ A;  2VK9 A;  5IZ2 A;  1Y1V A;  1I50 A;  2A69 D;  3U4Q A;  1TWH A;  3LR8 A;  1R9T A;  4CEH A;  3GTQ A;  2B63 A;  1TWF A;  2MQA A;  2YU9 A;  2BE5 D;  2X0P A;  1TWG A;  3LRD A;  2FIP A;  3GTK A;  2E2H A;  1WCM A;  2AQL A;  3GTO A;  3GTP A;  1ZYR D;  1YNN D;  2A6H D;  2A68 D;  2NVX A;  1SMY D;  1I3Q A;  2Y0N A;  4CEI A;  4QIW A;  2K3Q A;  3U44 A;  2MX8 A;  2JA5 A;  1SFO A;  2X0O A;  2A6E D;  2R92 A;  1K83 A;  1I6V D;  2O5J D;  2JA7 A;  2LYI A;  1TWC A;  1HQM D;  2K3N A;  4C2M A;  3GTJ A;  2F5J A;  2FIO A;  2N1D B;  2LTH A;  2NVY A;  3GTM A;  2JA6 A;  1Y1W A;  2R93 A;  2K3O A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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