3NZ4A

Crystal structure of a taxus phenylalanine aminomutase
Total Genus 257
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
257
sequence length
670
structure length
653
Chain Sequence
SRSHVKDILGLINTFNEVKKITVDGTTPITVAHVAALARRHDVKVALEAEQCRARVETCSSWVQRKAEDGADIYGVTTGFGACSSRRTNQLSELQESLIRCLLAGVFTKGCASSVDELPATVTRSAMLLRLNSFTYGCSGIRWEVMEALEKLLNSNVSPKVPLRGSVSDLIPLAYIAGLLIGKPSVIARIGDDVEVPAPEALSRVGLRPFKLQAKEGLALVNGTSFATALASTVMYDANVLLLLVETLCGMFCEVIFGREEFAHPLIHKVKPHPGQIESAELLEWLLRSSPFQDLSREYYSIDKLKKPKQDRYALRSSPQWLAPLVQTIRDATTTVETEVNSANDNPIIDHANDRALHGANFQGSAVGFYMDYVRIAVAGLGKLLFAQFTELMIEYYSNGLPGNLSLGPDLSVDYGLKGLDIAMAAYSSELQYLANPVTTHVHSAEQHNQDINSLALISARKTDEALDILKLMIASHLTAMCQAVDLRQLEEALVKVVENVVSTLADECGLPNDTKARLLYVAKAVPVYTYLESPCDPTLPLLLGLKQSCFGSILALHKETDTLVDRLAEFEKRLSDRLENEMTAVRVLYEKVRIQGSRFLPFYRFVRDELDTGVMSARREQTPQEDVQKVFDAIADGRITVPLLHCLQGFLG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Lyase
molecule keywords Phenylalanine ammonia-lyase
publication title Mechanistic, mutational, and structural evaluation of a taxus phenylalanine aminomutase.
pubmed doi rcsb
source organism Taxus canadensis
total genus 257
structure length 653
sequence length 670
chains with identical sequence B
ec nomenclature ec 4.3.1.24: Phenylalanine ammonia-lyase.
pdb deposition date 2010-07-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00221 Lyase_aromatic Aromatic amino acid lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.20 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Phenylalanine ammonia-lyase 1; domain 3 3nz4A03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 3nz4A01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 3nz4A02
1XWOA 2O7EA 4FFXA 1FUQA 2PFMA 4APBA 2OHYA 1RE5A 2X75A 3KDZA 4NLEA 1C3UA 3C8TA 1GKMA 4ADMA 3UNVA 3QBPA 2PTSA 5EYVA 3R6QA 1GK3A 1TJVA 1W27A 2PTRA 3RD8A 3RRPA 1K7WA 1U16A 1YFMA 3NZ4A 2O6YA 4NSLA 4C5UA 4EEIA 4BABA 2HVGA 1KQ7A 1B8FA 4FLCA 4V2QA 1EB4A 3NO9A 4V2RA 2O7BA 1FUPA 4EFCA 1GK2A 1AUWA 1FUOA 1HY0A 4APAA 2NYNA 2FUSA 1Q5NA 1U15A 1JSWA 3OCEA 1I0AA 1TJWA 4CQ5A 2PTQA 2NYFA 1YFEA 3GTDA 4C5RA 1VDKA 3TV2A 2J91A 1Y2MA 3R6VA 4BAAA 2QVEA 2VD6A 5D6BA 1YISA 2YIIA 1J3UA 1T6PA 2O7FA 4ADLA 3R6YA 5F92A 3CZOA 1DOFA 3GZHA 2RJRA 3BHGA 4C6GA 1TJ7A 3E04A 3OCFA 1DCNA 1TJUA 5HW2A 4C5SA 2O7DA 4HGVA 2E9FA 2O78A 1K62A 2RJSA 1GKJA 3KDYA 1C3CA 5EYTA 4MX2A 1FURA 1HY1A 2QGAB 5F91A 1T6JA
chains in the Genus database with same CATH superfamily
1XWOA 5H8WA 2O7EA 2VSFA 1XL7A 3CRVA 4FFXA 1FUQA 1Y1WA 5IZ2A 2PFMA 4APBA 3CQZA 2OHYA 1RE5A 2EZBA 2X75A 3KDZA 4NLEA 2O5JD 1C3UA 2X0OA 1GKMA 3C8TA 2CW0D 4ADMA 3UNVA 3QBPA 2PTSA 5EYVA 1ZYMA 3R6QA 1XLYA 2MX9A 1TWCA 2E2HA 2K3QA 1GK3A 1TJVA 4A15A 1W27A 2PTRA 2LKMB 3RD8A 1XMDA 1ZYRD 3FKIA 3LRDA 3RRPA 1EZAA 1TWAA 2Y0NA 1I50A 1EZBA 1K7WA 3EZEA 1R9TA 1U16A 2R92A 1HQMD 1YFMA 3LR6A 2K3NA 2X0QA 2F5JA 3NZ4A 2A68D 2O6YA 4NSLA 4C5UA 4EEIA 1SFOA 4BABA 2QGAB 1TWHA 2FENA 2HVGA 1I6VD 4C2MA 2N3EA 1B8FA 1TWGA 1KQ7A 3U44A 4WNLA 2NVYA 4CEIA 4FLCA 2A6HD 2JA6A 4V2QA 3GTOA 3EZAA 1EB4A 3NO9A 1YNND 2HROA 3EZBA 4V2RA 2O7BA 1TWFA 1FUPA 2A6ED 4EFCA 1I3QA 1YNJD 1GK2A 1AUWA 3CRW1 1Y1VA 3GTQA 2VUMA 1FUOA 2R7ZA 2FIOA 2MQAA 2E2IA 2MP0A 1IW7D 1HY0A 4APAA 2NYNA 2B63A 2A69D 2FUSA 4QIWA 2JA7A 1Q5NA 1U15A 1JSWA 3OCEA 5M0IA 1I0AA 5M0JA 1TJWA 4CQ5A 2PTQA 2VL7A 2X0PA 3LR8A 1YFEA 3GTDA 3LR2A 2LPIA 4C5RA 4FBSA 3GTKA 1VDKA 2LYIA 2K3OA 1SMYD 3TV2A 2J91A 1Y2MA 1XMCA 3R6VA 4BAAA 2QVEA 2VD6A 3GTPA 1YISA 5D6BA 2YIIA 4CEJA 1J3UA 2MX8A 1T6PA 2VK9A 3GTMA 2O7FA 4ADLA 2N1DB 3R6YA 1K83A 2YU9A 5F92A 3GTLA 3CZOA 1DOFA 3U4QA 3GTJA 3GZHA 2R93A 1XL8A 2RJRA 2EZCA 3BHGA 3GTGA 4C6GA 2EZAA 1TJ7A 2FIPA 3E04A 3OCFA 1DCNA 2LTHA 1TJUA 5HW2A 2BE5D 4C5SA 2O7DA 4HGVA 2JA5A 2E9FA 2O78A 2NVXA 4CEHA 2LPJA 1K62A 2RJSA 3H0GA 1GKJA 3KDYA 1WCMA 1C3CA 2AQLA 5EYTA 2FELA 2HWGA 4MX2A 1FURA 1HY1A 2NYFA 5F91A 1T6JA
chains in the Genus database with same CATH topology
1XWOA 2O7EA 4FFXA 1FUQA 2PFMA 4APBA 2OHYA 1RE5A 2X75A 3KDZA 4NLEA 1C3UA 3C8TA 1GKMA 4ADMA 3UNVA 3QBPA 2PTSA 5EYVA 3R6QA 1GK3A 1TJVA 1W27A 2PTRA 3RD8A 3RRPA 1K7WA 1U16A 1YFMA 3NZ4A 2O6YA 4NSLA 4C5UA 4EEIA 4BABA 2HVGA 1KQ7A 1B8FA 4FLCA 4V2QA 1EB4A 3NO9A 4V2RA 2O7BA 1FUPA 4EFCA 1GK2A 1AUWA 1FUOA 1HY0A 4APAA 2NYNA 2FUSA 1Q5NA 1U15A 1JSWA 3OCEA 1I0AA 1TJWA 4CQ5A 2PTQA 2NYFA 1YFEA 3GTDA 4C5RA 1VDKA 3TV2A 2J91A 1Y2MA 3R6VA 4BAAA 2QVEA 2VD6A 5D6BA 1YISA 2YIIA 1J3UA 1T6PA 2O7FA 4ADLA 3R6YA 5F92A 3CZOA 1DOFA 3GZHA 2RJRA 3BHGA 4C6GA 1TJ7A 3E04A 3OCFA 1DCNA 1TJUA 5HW2A 4C5SA 2O7DA 4HGVA 2E9FA 2O78A 1K62A 2RJSA 1GKJA 3KDYA 1C3CA 5EYTA 4MX2A 1FURA 1HY1A 2QGAB 5F91A 1T6JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1XWO A;  2O7E A;  4FFX A;  1FUQ A;  2PFM A;  4APB A;  2OHY A;  1RE5 A;  2X75 A;  3KDZ A;  4NLE A;  1C3U A;  3C8T A;  1GKM A;  4ADM A;  3UNV A;  3QBP A;  2PTS A;  5EYV A;  3R6Q A;  1GK3 A;  1TJV A;  1W27 A;  2PTR A;  3RD8 A;  3RRP A;  1K7W A;  1U16 A;  1YFM A;  3NZ4 A;  2O6Y A;  4NSL A;  4C5U A;  4EEI A;  4BAB A;  2HVG A;  1KQ7 A;  1B8F A;  4FLC A;  4V2Q A;  1EB4 A;  3NO9 A;  4V2R A;  2O7B A;  1FUP A;  4EFC A;  1GK2 A;  1AUW A;  1FUO A;  1HY0 A;  4APA A;  2NYN A;  2FUS A;  1Q5N A;  1U15 A;  1JSW A;  3OCE A;  1I0A A;  1TJW A;  4CQ5 A;  2PTQ A;  2NYF A;  1YFE A;  3GTD A;  4C5R A;  1VDK A;  3TV2 A;  2J91 A;  1Y2M A;  3R6V A;  4BAA A;  2QVE A;  2VD6 A;  5D6B A;  1YIS A;  2YII A;  1J3U A;  1T6P A;  2O7F A;  4ADL A;  3R6Y A;  5F92 A;  3CZO A;  1DOF A;  3GZH A;  2RJR A;  3BHG A;  4C6G A;  1TJ7 A;  3E04 A;  3OCF A;  1DCN A;  1TJU A;  5HW2 A;  4C5S A;  2O7D A;  4HGV A;  2E9F A;  2O78 A;  1K62 A;  2RJS A;  1GKJ A;  3KDY A;  1C3C A;  5EYT A;  4MX2 A;  1FUR A;  1HY1 A;  2QGA B;  5F91 A;  1T6J A; 
#chains in the Genus database with same CATH topology
 1XWO A;  5H8W A;  2O7E A;  2VSF A;  1XL7 A;  3CRV A;  4FFX A;  1FUQ A;  1Y1W A;  5IZ2 A;  2PFM A;  4APB A;  3CQZ A;  2OHY A;  1RE5 A;  2EZB A;  2X75 A;  3KDZ A;  4NLE A;  2O5J D;  1C3U A;  2X0O A;  1GKM A;  3C8T A;  2CW0 D;  4ADM A;  3UNV A;  3QBP A;  2PTS A;  5EYV A;  1ZYM A;  3R6Q A;  1XLY A;  2MX9 A;  1TWC A;  2E2H A;  2K3Q A;  1GK3 A;  1TJV A;  4A15 A;  1W27 A;  2PTR A;  2LKM B;  3RD8 A;  1XMD A;  1ZYR D;  3FKI A;  3LRD A;  3RRP A;  1EZA A;  1TWA A;  2Y0N A;  1I50 A;  1EZB A;  1K7W A;  3EZE A;  1R9T A;  1U16 A;  2R92 A;  1HQM D;  1YFM A;  3LR6 A;  2K3N A;  2X0Q A;  2F5J A;  3NZ4 A;  2A68 D;  2O6Y A;  4NSL A;  4C5U A;  4EEI A;  1SFO A;  4BAB A;  2QGA B;  1TWH A;  2FEN A;  2HVG A;  1I6V D;  4C2M A;  2N3E A;  1B8F A;  1TWG A;  1KQ7 A;  3U44 A;  4WNL A;  2NVY A;  4CEI A;  4FLC A;  2A6H D;  2JA6 A;  4V2Q A;  3GTO A;  3EZA A;  1EB4 A;  3NO9 A;  1YNN D;  2HRO A;  3EZB A;  4V2R A;  2O7B A;  1TWF A;  1FUP A;  2A6E D;  4EFC A;  1I3Q A;  1YNJ D;  1GK2 A;  1AUW A;  3CRW 1;  1Y1V A;  3GTQ A;  2VUM A;  1FUO A;  2R7Z A;  2FIO A;  2MQA A;  2E2I A;  2MP0 A;  1IW7 D;  1HY0 A;  4APA A;  2NYN A;  2B63 A;  2A69 D;  2FUS A;  4QIW A;  2JA7 A;  1Q5N A;  1U15 A;  1JSW A;  3OCE A;  5M0I A;  1I0A A;  5M0J A;  1TJW A;  4CQ5 A;  2PTQ A;  2VL7 A;  2X0P A;  3LR8 A;  1YFE A;  3GTD A;  3LR2 A;  2LPI A;  4C5R A;  4FBS A;  3GTK A;  1VDK A;  2LYI A;  2K3O A;  1SMY D;  3TV2 A;  2J91 A;  1Y2M A;  1XMC A;  3R6V A;  4BAA A;  2QVE A;  2VD6 A;  3GTP A;  1YIS A;  5D6B A;  2YII A;  4CEJ A;  1J3U A;  2MX8 A;  1T6P A;  2VK9 A;  3GTM A;  2O7F A;  4ADL A;  2N1D B;  3R6Y A;  1K83 A;  2YU9 A;  5F92 A;  3GTL A;  3CZO A;  1DOF A;  3U4Q A;  3GTJ A;  3GZH A;  2R93 A;  1XL8 A;  2RJR A;  2EZC A;  3BHG A;  3GTG A;  4C6G A;  2EZA A;  1TJ7 A;  2FIP A;  3E04 A;  3OCF A;  1DCN A;  2LTH A;  1TJU A;  5HW2 A;  2BE5 D;  4C5S A;  2O7D A;  4HGV A;  2JA5 A;  2E9F A;  2O78 A;  2NVX A;  4CEH A;  2LPJ A;  1K62 A;  2RJS A;  3H0G A;  1GKJ A;  3KDY A;  1WCM A;  1C3C A;  2AQL A;  5EYT A;  2FEL A;  2HWG A;  4MX2 A;  1FUR A;  1HY1 A;  2NYF A;  5F91 A;  1T6J A; 
#chains in the Genus database with same CATH homology
 1XWO A;  2O7E A;  4FFX A;  1FUQ A;  2PFM A;  4APB A;  2OHY A;  1RE5 A;  2X75 A;  3KDZ A;  4NLE A;  1C3U A;  3C8T A;  1GKM A;  4ADM A;  3UNV A;  3QBP A;  2PTS A;  5EYV A;  3R6Q A;  1GK3 A;  1TJV A;  1W27 A;  2PTR A;  3RD8 A;  3RRP A;  1K7W A;  1U16 A;  1YFM A;  3NZ4 A;  2O6Y A;  4NSL A;  4C5U A;  4EEI A;  4BAB A;  2HVG A;  1KQ7 A;  1B8F A;  4FLC A;  4V2Q A;  1EB4 A;  3NO9 A;  4V2R A;  2O7B A;  1FUP A;  4EFC A;  1GK2 A;  1AUW A;  1FUO A;  1HY0 A;  4APA A;  2NYN A;  2FUS A;  1Q5N A;  1U15 A;  1JSW A;  3OCE A;  1I0A A;  1TJW A;  4CQ5 A;  2PTQ A;  2NYF A;  1YFE A;  3GTD A;  4C5R A;  1VDK A;  3TV2 A;  2J91 A;  1Y2M A;  3R6V A;  4BAA A;  2QVE A;  2VD6 A;  5D6B A;  1YIS A;  2YII A;  1J3U A;  1T6P A;  2O7F A;  4ADL A;  3R6Y A;  5F92 A;  3CZO A;  1DOF A;  3GZH A;  2RJR A;  3BHG A;  4C6G A;  1TJ7 A;  3E04 A;  3OCF A;  1DCN A;  1TJU A;  5HW2 A;  4C5S A;  2O7D A;  4HGV A;  2E9F A;  2O78 A;  1K62 A;  2RJS A;  1GKJ A;  3KDY A;  1C3C A;  5EYT A;  4MX2 A;  1FUR A;  1HY1 A;  2QGA B;  5F91 A;  1T6J A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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