3LR6A

Self-assembly of spider silk proteins is controlled by a ph-sensitive relay
Total Genus 53
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
53
sequence length
125
structure length
125
Chain Sequence
HTTPWTNPGLAENFMNSFMQGLSSMPGFTASQLDNMSTIAQSMVQSIQSLAAQGRTSPNKLQALNMAFASSMAEIAASEEGGGSLSTKTSSIASAMSNAFLQTTGVVNQPFINEITQLVSMFAQA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
source organism Euprosthenops australis
publication title Self-assembly of spider silk proteins is controlled by a pH-sensitive relay.
pubmed doi rcsb
molecule keywords Major ampullate spidroin 1
total genus 53
structure length 125
sequence length 125
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-02-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16763 Spidroin_N Major ampullate spidroin 1, spider silk protein 1, N-term
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.70 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Enzyme I; Chain A, domain 2 3lr6A01
3LR6A 2LPJA 3LR8A 2LTHA 2N3EA 3LRDA 2MX8A 5IZ2A 2LPIA 2MX9A 4FBSA 3LR2A 2K3QA
chains in the Genus database with same CATH superfamily
2AQLA 3LR6A 3GTKA 2X0PA 2MX8A 1R9TA 2R92A 2FIPA 4V2QA 2R93A 2A68D 2F5JA 2LYIA 3EZEA 1TWFA 2FIOA 2HWGA 2K3NA 2LTHA 1ZYRD 2EZAA 2CW0D 3GTOA 1EZAA 3FKIA 2VUMA 4QIWA 1WCMA 3LRDA 2BE5D 3U44A 4BAAA 2R7ZA 1Y1VA 2JA5A 3GTGA 1Y1WA 3EZBA 2LPIA 3GTJA 4C6GA 3U4QA 1TWAA 3H0GA 4V2RA 2MX9A 2LPJA 2JA7A 1SFOA 3CQZA 4BABA 4CEHA 2O5JD 1TWGA 2EZCA 4C5RA 2X0QA 2N3EA 4CEJA 2HROA 2E2HA 1T6JA 4C5SA 1W27A 4C2MA 4CEIA 3GTMA 2B63A 3NZ4A 3GTLA 2MP0A 1YNND 1YNJD 1Y2MA 4FBSA 1SMYD 3EZAA 2A6ED 2A6HD 2EZBA 3GTPA 1TWHA 2LKMB 1K83A 3LR2A 2Y0NA 1T6PA 2NVYA 2N1DB 2NVXA 2A69D 1ZYMA 4C5UA 5IZ2A 1IW7D 2YU9A 1EZBA 1TWCA 1I50A 1HQMD 2JA6A 2MQAA 4CQ5A 2E2IA 2VK9A 3LR8A 2YIIA 2K3OA 3GTQA 2X0OA 1I3QA 2K3QA 1I6VD
chains in the Genus database with same CATH topology
2AQLA 3LR6A 3GTKA 2X0PA 2MX8A 1R9TA 2R92A 2FIPA 2R93A 2A68D 2F5JA 2LYIA 1TWFA 2FIOA 2K3NA 2LTHA 1ZYRD 2CW0D 3GTOA 3FKIA 2VUMA 1WCMA 4QIWA 3LRDA 2BE5D 3U44A 2R7ZA 1Y1VA 2JA5A 3GTGA 1Y1WA 2LPIA 3GTJA 3U4QA 1TWAA 3H0GA 2MX9A 2LPJA 2JA7A 1SFOA 3CQZA 4CEHA 2O5JD 1TWGA 2X0QA 2N3EA 4CEJA 2E2HA 4C2MA 4CEIA 3GTMA 2B63A 3GTLA 1YNND 1YNJD 4FBSA 1SMYD 2A6ED 2A6HD 3GTPA 1TWHA 2LKMB 1K83A 3LR2A 2Y0NA 2NVYA 2N1DB 2NVXA 2A69D 5IZ2A 1IW7D 2YU9A 1TWCA 1I50A 1HQMD 2JA6A 2MQAA 2E2IA 2VK9A 3LR8A 2K3OA 3GTQA 2X0OA 1I3QA 2K3QA 1I6VD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LR6 A;  2LPJ A;  3LR8 A;  2LTH A;  2N3E A;  3LRD A;  2MX8 A;  5IZ2 A;  2LPI A;  2MX9 A;  4FBS A;  3LR2 A;  2K3Q A; 
#chains in the Genus database with same CATH topology
 2AQL A;  3LR6 A;  3GTK A;  2X0P A;  2MX8 A;  1R9T A;  2R92 A;  2FIP A;  4V2Q A;  2R93 A;  2A68 D;  2F5J A;  2LYI A;  3EZE A;  1TWF A;  2FIO A;  2HWG A;  2K3N A;  2LTH A;  1ZYR D;  2EZA A;  2CW0 D;  3GTO A;  1EZA A;  3FKI A;  2VUM A;  4QIW A;  1WCM A;  3LRD A;  2BE5 D;  3U44 A;  4BAA A;  2R7Z A;  1Y1V A;  2JA5 A;  3GTG A;  1Y1W A;  3EZB A;  2LPI A;  3GTJ A;  4C6G A;  3U4Q A;  1TWA A;  3H0G A;  4V2R A;  2MX9 A;  2LPJ A;  2JA7 A;  1SFO A;  3CQZ A;  4BAB A;  4CEH A;  2O5J D;  1TWG A;  2EZC A;  4C5R A;  2X0Q A;  2N3E A;  4CEJ A;  2HRO A;  2E2H A;  1T6J A;  4C5S A;  1W27 A;  4C2M A;  4CEI A;  3GTM A;  2B63 A;  3NZ4 A;  3GTL A;  2MP0 A;  1YNN D;  1YNJ D;  1Y2M A;  4FBS A;  1SMY D;  3EZA A;  2A6E D;  2A6H D;  2EZB A;  3GTP A;  1TWH A;  2LKM B;  1K83 A;  3LR2 A;  2Y0N A;  1T6P A;  2NVY A;  2N1D B;  2NVX A;  2A69 D;  1ZYM A;  4C5U A;  5IZ2 A;  1IW7 D;  2YU9 A;  1EZB A;  1TWC A;  1I50 A;  1HQM D;  2JA6 A;  2MQA A;  4CQ5 A;  2E2I A;  2VK9 A;  3LR8 A;  2YII A;  2K3O A;  3GTQ A;  2X0O A;  1I3Q A;  2K3Q A;  1I6V D; 
#chains in the Genus database with same CATH homology
 2AQL A;  3LR6 A;  3GTK A;  2X0P A;  2MX8 A;  1R9T A;  2R92 A;  2FIP A;  2R93 A;  2A68 D;  2F5J A;  2LYI A;  1TWF A;  2FIO A;  2K3N A;  2LTH A;  1ZYR D;  2CW0 D;  3GTO A;  3FKI A;  2VUM A;  1WCM A;  4QIW A;  3LRD A;  2BE5 D;  3U44 A;  2R7Z A;  1Y1V A;  2JA5 A;  3GTG A;  1Y1W A;  2LPI A;  3GTJ A;  3U4Q A;  1TWA A;  3H0G A;  2MX9 A;  2LPJ A;  2JA7 A;  1SFO A;  3CQZ A;  4CEH A;  2O5J D;  1TWG A;  2X0Q A;  2N3E A;  4CEJ A;  2E2H A;  4C2M A;  4CEI A;  3GTM A;  2B63 A;  3GTL A;  1YNN D;  1YNJ D;  4FBS A;  1SMY D;  2A6E D;  2A6H D;  3GTP A;  1TWH A;  2LKM B;  1K83 A;  3LR2 A;  2Y0N A;  2NVY A;  2N1D B;  2NVX A;  2A69 D;  5IZ2 A;  1IW7 D;  2YU9 A;  1TWC A;  1I50 A;  1HQM D;  2JA6 A;  2MQA A;  2E2I A;  2VK9 A;  3LR8 A;  2K3O A;  3GTQ A;  2X0O A;  1I3Q A;  2K3Q A;  1I6V D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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