3LRDA

Self-assembly of spider silk proteins is controlled by a ph-sensitive relay
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
129
structure length
129
Chain Sequence
HTTPWTNPGLAENFMNSFMQGLSSMPGFTASQLDNMSTIAQSMVQSIQSLAAQGRTSPNKLQALNMAFASSMAEIAASQEGGGSLSTKTSSIASAMSNAFLQTTGVVNQPFINEITQLVSMFAQAGMND
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
source organism Euprosthenops australis
publication title Self-assembly of spider silk proteins is controlled by a pH-sensitive relay.
pubmed doi rcsb
molecule keywords Major ampullate spidroin 1
total genus 54
structure length 129
sequence length 129
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-02-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16763 Spidroin_N Major ampullate spidroin 1, spider silk protein 1, N-term
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.70 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Enzyme I; Chain A, domain 2 3lrdA01
2LPJA 4FBSA 2MX8A 5IZ2A 2MX9A 3LR6A 2K3QA 2LTHA 3LR2A 2N3EA 3LR8A 2LPIA 3LRDA
chains in the Genus database with same CATH superfamily
1WCMA 2AQLA 1EZBA 2MX9A 3LR6A 2X0OA 2MQAA 4FBSA 2A6HD 4C5RA 4C6GA 2K3NA 3U44A 1SMYD 4C2MA 3LR8A 3EZBA 3FKIA 2EZCA 1I50A 2O5JD 1IW7D 2NVXA 2LTHA 3NZ4A 3GTOA 1T6JA 1ZYMA 2LKMB 2E2IA 2EZBA 2A69D 2N3EA 1TWAA 3GTGA 2JA5A 2NVYA 4V2QA 1K83A 3CQZA 2MP0A 2HROA 1I3QA 1SFOA 2HWGA 1YNJD 2B63A 2X0PA 2N1DB 2EZAA 4V2RA 1R9TA 4CEJA 2LPIA 4C5UA 1EZAA 2LPJA 2R92A 2A6ED 2K3QA 1YNND 2Y0NA 4BAAA 3GTJA 3EZAA 2JA6A 1W27A 4C5SA 1TWGA 1TWFA 3GTKA 2CW0D 3EZEA 1TWCA 2YU9A 1Y1WA 3GTPA 4BABA 2YIIA 1TWHA 1Y2MA 3GTQA 2R93A 1Y1VA 2LYIA 2VK9A 4CEHA 4QIWA 3GTLA 3GTMA 4CEIA 2E2HA 3LRDA 2VUMA 3H0GA 1HQMD 1ZYRD 2F5JA 2R7ZA 1T6PA 2FIPA 2JA7A 2FIOA 4CQ5A 2X0QA 3U4QA 2K3OA 2MX8A 5IZ2A 2A68D 3LR2A 1I6VD 2BE5D
chains in the Genus database with same CATH topology
1WCMA 2AQLA 2MX9A 3LR6A 2X0OA 2MQAA 4FBSA 2A6HD 3U44A 2K3NA 1SMYD 4C2MA 3LR8A 3FKIA 1I50A 2O5JD 1IW7D 2NVXA 2LTHA 3GTOA 2LKMB 2E2IA 2N3EA 2A69D 1TWAA 3GTGA 2JA5A 2NVYA 1K83A 3CQZA 1I3QA 1SFOA 1YNJD 2B63A 2X0PA 2N1DB 1R9TA 4CEJA 2LPIA 2LPJA 2R92A 2A6ED 2K3QA 1YNND 2Y0NA 3GTJA 2JA6A 1TWGA 1TWFA 3GTKA 2CW0D 1TWCA 2YU9A 1Y1WA 3GTPA 1TWHA 3GTQA 2R93A 1Y1VA 2LYIA 4CEHA 2VK9A 4QIWA 3GTLA 3GTMA 4CEIA 2E2HA 3LRDA 2VUMA 3H0GA 1HQMD 1ZYRD 2F5JA 2R7ZA 2FIPA 2JA7A 2FIOA 2X0QA 3U4QA 2K3OA 2MX8A 5IZ2A 2A68D 3LR2A 1I6VD 2BE5D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LPJ A;  4FBS A;  2MX8 A;  5IZ2 A;  2MX9 A;  3LR6 A;  2K3Q A;  2LTH A;  3LR2 A;  2N3E A;  3LR8 A;  2LPI A;  3LRD A; 
#chains in the Genus database with same CATH topology
 1WCM A;  2AQL A;  1EZB A;  2MX9 A;  3LR6 A;  2X0O A;  2MQA A;  4FBS A;  2A6H D;  4C5R A;  4C6G A;  2K3N A;  3U44 A;  1SMY D;  4C2M A;  3LR8 A;  3EZB A;  3FKI A;  2EZC A;  1I50 A;  2O5J D;  1IW7 D;  2NVX A;  2LTH A;  3NZ4 A;  3GTO A;  1T6J A;  1ZYM A;  2LKM B;  2E2I A;  2EZB A;  2A69 D;  2N3E A;  1TWA A;  3GTG A;  2JA5 A;  2NVY A;  4V2Q A;  1K83 A;  3CQZ A;  2MP0 A;  2HRO A;  1I3Q A;  1SFO A;  2HWG A;  1YNJ D;  2B63 A;  2X0P A;  2N1D B;  2EZA A;  4V2R A;  1R9T A;  4CEJ A;  2LPI A;  4C5U A;  1EZA A;  2LPJ A;  2R92 A;  2A6E D;  2K3Q A;  1YNN D;  2Y0N A;  4BAA A;  3GTJ A;  3EZA A;  2JA6 A;  1W27 A;  4C5S A;  1TWG A;  1TWF A;  3GTK A;  2CW0 D;  3EZE A;  1TWC A;  2YU9 A;  1Y1W A;  3GTP A;  4BAB A;  2YII A;  1TWH A;  1Y2M A;  3GTQ A;  2R93 A;  1Y1V A;  2LYI A;  2VK9 A;  4CEH A;  4QIW A;  3GTL A;  3GTM A;  4CEI A;  2E2H A;  3LRD A;  2VUM A;  3H0G A;  1HQM D;  1ZYR D;  2F5J A;  2R7Z A;  1T6P A;  2FIP A;  2JA7 A;  2FIO A;  4CQ5 A;  2X0Q A;  3U4Q A;  2K3O A;  2MX8 A;  5IZ2 A;  2A68 D;  3LR2 A;  1I6V D;  2BE5 D; 
#chains in the Genus database with same CATH homology
 1WCM A;  2AQL A;  2MX9 A;  3LR6 A;  2X0O A;  2MQA A;  4FBS A;  2A6H D;  3U44 A;  2K3N A;  1SMY D;  4C2M A;  3LR8 A;  3FKI A;  1I50 A;  2O5J D;  1IW7 D;  2NVX A;  2LTH A;  3GTO A;  2LKM B;  2E2I A;  2N3E A;  2A69 D;  1TWA A;  3GTG A;  2JA5 A;  2NVY A;  1K83 A;  3CQZ A;  1I3Q A;  1SFO A;  1YNJ D;  2B63 A;  2X0P A;  2N1D B;  1R9T A;  4CEJ A;  2LPI A;  2LPJ A;  2R92 A;  2A6E D;  2K3Q A;  1YNN D;  2Y0N A;  3GTJ A;  2JA6 A;  1TWG A;  1TWF A;  3GTK A;  2CW0 D;  1TWC A;  2YU9 A;  1Y1W A;  3GTP A;  1TWH A;  3GTQ A;  2R93 A;  1Y1V A;  2LYI A;  4CEH A;  2VK9 A;  4QIW A;  3GTL A;  3GTM A;  4CEI A;  2E2H A;  3LRD A;  2VUM A;  3H0G A;  1HQM D;  1ZYR D;  2F5J A;  2R7Z A;  2FIP A;  2JA7 A;  2FIO A;  2X0Q A;  3U4Q A;  2K3O A;  2MX8 A;  5IZ2 A;  2A68 D;  3LR2 A;  1I6V D;  2BE5 D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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