2K3OA

Solution structure of the type 2 repetitive domain (tusp1-rp2) of the egg case silk from nephila antipodiana
Total Genus 44
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
129
structure length
129
Chain Sequence
SYSSAFAQAASSSLATSSAISRAFASVSSASAASSLAYNIGLSAARSLGIASDTALAGALAQAVGGVGAGASASAYANAIARAAGQFLATQGVLNAVNASSLGSALANALSDSAANSAVSGNYLGVSQN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution structure of eggcase silk protein and its implications for silk fiber formation
pubmed doi rcsb
source organism Nephila antipodiana
molecule tags Structural protein
molecule keywords TuSp1
total genus 44
structure length 129
sequence length 129
ec nomenclature
pdb deposition date 2008-05-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.60 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Enzyme I; Chain A, domain 2 2k3oA00
2LYIA 2K3OA 2K3NA 2MQAA
chains in the Genus database with same CATH superfamily
2FIOA 2MQAA 2MP0A 4CEJA 2R92A 2F5JA 4QIWA 2MX8A 2A6HD 1I3QA 2HROA 1EZAA 2EZCA 1Y1VA 3GTOA 2R93A 1TWGA 2Y0NA 3U4QA 2B63A 3EZBA 1TWCA 2YU9A 2VUMA 2JA6A 2LPIA 3GTPA 2CW0D 1R9TA 2K3NA 4C5RA 2E2IA 4CEHA 3GTKA 1SMYD 3GTQA 2E2HA 2R7ZA 2K3QA 3GTMA 1TWAA 2N3EA 3GTJA 1ZYMA 1WCMA 4C2MA 2EZBA 1IW7D 2YIIA 1EZBA 4C5UA 4CEIA 3CQZA 5IZ2A 2EZAA 1Y1WA 4FBSA 2HWGA 2N1DB 2LKMB 1YNJD 4BABA 1TWFA 4V2RA 1Y2MA 3LR2A 2AQLA 2X0OA 2MX9A 2LTHA 2X0PA 1I50A 1HQMD 2O5JD 4BAAA 3LRDA 4CQ5A 3EZAA 1YNND 2K3OA 1TWHA 2BE5D 3H0GA 2JA7A 1T6JA 2X0QA 2A69D 3GTGA 3LR6A 1K83A 4V2QA 2LPJA 3GTLA 4C6GA 3NZ4A 1W27A 1SFOA 3FKIA 1T6PA 1ZYRD 2VK9A 4C5SA 1I6VD 3LR8A 2NVXA 2NVYA 3U44A 2JA5A 2A6ED 2FIPA 2LYIA 3EZEA 2A68D
chains in the Genus database with same CATH topology
2FIOA 2MQAA 4CEJA 2R92A 2F5JA 4QIWA 2MX8A 2A6HD 1I3QA 1Y1VA 3GTOA 2R93A 1TWGA 2Y0NA 3U4QA 2B63A 1TWCA 2YU9A 2VUMA 2JA6A 2LPIA 3GTPA 2CW0D 1R9TA 2K3NA 2E2IA 4CEHA 2E2HA 1SMYD 3GTQA 2R7ZA 3GTKA 2K3QA 3GTMA 1TWAA 2N3EA 3GTJA 1WCMA 4C2MA 1IW7D 4CEIA 3CQZA 5IZ2A 1Y1WA 4FBSA 2N1DB 2LKMB 1YNJD 1TWFA 3LR2A 2AQLA 2X0OA 2MX9A 2LTHA 2X0PA 1I50A 1HQMD 2O5JD 3LRDA 1YNND 2K3OA 1TWHA 2BE5D 3H0GA 2JA7A 2X0QA 2A69D 3GTGA 1K83A 3LR6A 2LPJA 3GTLA 1SFOA 3FKIA 1ZYRD 2VK9A 1I6VD 3LR8A 2NVXA 2NVYA 3U44A 2JA5A 2A6ED 2FIPA 2LYIA 2A68D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LYI A;  2K3O A;  2K3N A;  2MQA A; 
#chains in the Genus database with same CATH topology
 2FIO A;  2MQA A;  2MP0 A;  4CEJ A;  2R92 A;  2F5J A;  4QIW A;  2MX8 A;  2A6H D;  1I3Q A;  2HRO A;  1EZA A;  2EZC A;  1Y1V A;  3GTO A;  2R93 A;  1TWG A;  2Y0N A;  3U4Q A;  2B63 A;  3EZB A;  1TWC A;  2YU9 A;  2VUM A;  2JA6 A;  2LPI A;  3GTP A;  2CW0 D;  1R9T A;  2K3N A;  4C5R A;  2E2I A;  4CEH A;  3GTK A;  1SMY D;  3GTQ A;  2E2H A;  2R7Z A;  2K3Q A;  3GTM A;  1TWA A;  2N3E A;  3GTJ A;  1ZYM A;  1WCM A;  4C2M A;  2EZB A;  1IW7 D;  2YII A;  1EZB A;  4C5U A;  4CEI A;  3CQZ A;  5IZ2 A;  2EZA A;  1Y1W A;  4FBS A;  2HWG A;  2N1D B;  2LKM B;  1YNJ D;  4BAB A;  1TWF A;  4V2R A;  1Y2M A;  3LR2 A;  2AQL A;  2X0O A;  2MX9 A;  2LTH A;  2X0P A;  1I50 A;  1HQM D;  2O5J D;  4BAA A;  3LRD A;  4CQ5 A;  3EZA A;  1YNN D;  2K3O A;  1TWH A;  2BE5 D;  3H0G A;  2JA7 A;  1T6J A;  2X0Q A;  2A69 D;  3GTG A;  3LR6 A;  1K83 A;  4V2Q A;  2LPJ A;  3GTL A;  4C6G A;  3NZ4 A;  1W27 A;  1SFO A;  3FKI A;  1T6P A;  1ZYR D;  2VK9 A;  4C5S A;  1I6V D;  3LR8 A;  2NVX A;  2NVY A;  3U44 A;  2JA5 A;  2A6E D;  2FIP A;  2LYI A;  3EZE A;  2A68 D; 
#chains in the Genus database with same CATH homology
 2FIO A;  2MQA A;  4CEJ A;  2R92 A;  2F5J A;  4QIW A;  2MX8 A;  2A6H D;  1I3Q A;  1Y1V A;  3GTO A;  2R93 A;  1TWG A;  2Y0N A;  3U4Q A;  2B63 A;  1TWC A;  2YU9 A;  2VUM A;  2JA6 A;  2LPI A;  3GTP A;  2CW0 D;  1R9T A;  2K3N A;  2E2I A;  4CEH A;  2E2H A;  1SMY D;  3GTQ A;  2R7Z A;  3GTK A;  2K3Q A;  3GTM A;  1TWA A;  2N3E A;  3GTJ A;  1WCM A;  4C2M A;  1IW7 D;  4CEI A;  3CQZ A;  5IZ2 A;  1Y1W A;  4FBS A;  2N1D B;  2LKM B;  1YNJ D;  1TWF A;  3LR2 A;  2AQL A;  2X0O A;  2MX9 A;  2LTH A;  2X0P A;  1I50 A;  1HQM D;  2O5J D;  3LRD A;  1YNN D;  2K3O A;  1TWH A;  2BE5 D;  3H0G A;  2JA7 A;  2X0Q A;  2A69 D;  3GTG A;  1K83 A;  3LR6 A;  2LPJ A;  3GTL A;  1SFO A;  3FKI A;  1ZYR D;  2VK9 A;  1I6V D;  3LR8 A;  2NVX A;  2NVY A;  3U44 A;  2JA5 A;  2A6E D;  2FIP A;  2LYI A;  2A68 D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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