2K3OA

Solution structure of the type 2 repetitive domain (tusp1-rp2) of the egg case silk from nephila antipodiana
Total Genus 44
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
129
structure length
129
Chain Sequence
b'SYSSAFAQAASSSLATSSAISRAFASVSSASAASSLAYNIGLSAARSLGIASDTALAGALAQAVGGVGAGASASAYANAIARAAGQFLATQGVLNAVNASSLGSALANALSDSAANSAVSGNYLGVSQN'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords TuSp1
molecule tags Structural protein
source organism Nephila antipodiana
publication title Solution structure of eggcase silk protein and its implications for silk fiber formation
pubmed doi rcsb
total genus 44
structure length 129
sequence length 129
ec nomenclature
pdb deposition date 2008-05-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.60 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Enzyme I; Chain A, domain 2 2k3oA00
2K3OA 2K3NA 2LYIA 2MQAA
chains in the Genus database with same CATH superfamily
3EZBA 1T6PA 3GTOA 4QIWA 1TWFA 3GTKA 2JA6A 2MQAA 1I6VD 2R93A 1TWAA 2K3OA 1IW7D 3U4QA 2K3QA 1K83A 4V2RA 2LPJA 2A6HD 1Y1VA 2LPIA 2NVYA 3FKIA 2R7ZA 2O5JD 3GTPA 4FBSA 2N3EA 2JA7A 2VUMA 3LR8A 2LYIA 2NVXA 4CEHA 4C5RA 1ZYRD 1T6JA 2YIIA 5IZ2A 2JA5A 3EZAA 1TWHA 3U44A 2B63A 1I50A 1WCMA 4BAAA 1EZBA 4C5UA 3GTMA 3CQZA 1R9TA 3H0GA 2A6ED 2E2IA 2FIOA 2X0PA 2E2HA 2AQLA 4C5SA 3LR6A 1YNND 2HWGA 3GTLA 3GTGA 3LRDA 2MP0A 2Y0NA 2X0OA 2K3NA 3LR2A 1ZYMA 4C6GA 2EZBA 3NZ4A 1SFOA 1YNJD 2A68D 1I3QA 2F5JA 2R92A 1Y2MA 3EZEA 2HROA 4C2MA 2EZCA 2YU9A 2N1DB 2BE5D 1SMYD 4BABA 2MX8A 1EZAA 4V2QA 1TWCA 2EZAA 1W27A 1TWGA 3GTJA 2A69D 2CW0D 1Y1WA 4CEJA 2MX9A 1HQMD 2X0QA 4CEIA 2LKMB 2VK9A 4CQ5A 2LTHA 2FIPA 3GTQA
chains in the Genus database with same CATH topology
3GTOA 4QIWA 1TWFA 3GTKA 2JA6A 2MQAA 1I6VD 2R93A 1TWAA 2K3OA 1IW7D 3U4QA 2K3QA 1K83A 2LPJA 2A6HD 1Y1VA 2LPIA 2NVYA 3FKIA 2R7ZA 2O5JD 3GTPA 4FBSA 2N3EA 2JA7A 2VUMA 3LR8A 2LYIA 2NVXA 4CEHA 1ZYRD 5IZ2A 2JA5A 1TWHA 3U44A 2B63A 1I50A 1WCMA 3GTMA 3CQZA 1R9TA 3H0GA 2A6ED 2E2IA 2FIOA 2X0PA 2E2HA 2AQLA 3LR6A 1YNND 3GTLA 3GTGA 3LRDA 2Y0NA 2X0OA 2K3NA 3LR2A 1SFOA 1YNJD 2A68D 1I3QA 2F5JA 2R92A 4C2MA 2YU9A 2N1DB 2BE5D 1SMYD 2MX8A 1TWCA 1TWGA 3GTJA 2A69D 2CW0D 1Y1WA 4CEJA 2MX9A 1HQMD 2X0QA 4CEIA 2LKMB 2VK9A 2LTHA 2FIPA 3GTQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2K3O A;  2K3N A;  2LYI A;  2MQA A; 
#chains in the Genus database with same CATH topology
 3EZB A;  1T6P A;  3GTO A;  4QIW A;  1TWF A;  3GTK A;  2JA6 A;  2MQA A;  1I6V D;  2R93 A;  1TWA A;  2K3O A;  1IW7 D;  3U4Q A;  2K3Q A;  1K83 A;  4V2R A;  2LPJ A;  2A6H D;  1Y1V A;  2LPI A;  2NVY A;  3FKI A;  2R7Z A;  2O5J D;  3GTP A;  4FBS A;  2N3E A;  2JA7 A;  2VUM A;  3LR8 A;  2LYI A;  2NVX A;  4CEH A;  4C5R A;  1ZYR D;  1T6J A;  2YII A;  5IZ2 A;  2JA5 A;  3EZA A;  1TWH A;  3U44 A;  2B63 A;  1I50 A;  1WCM A;  4BAA A;  1EZB A;  4C5U A;  3GTM A;  3CQZ A;  1R9T A;  3H0G A;  2A6E D;  2E2I A;  2FIO A;  2X0P A;  2E2H A;  2AQL A;  4C5S A;  3LR6 A;  1YNN D;  2HWG A;  3GTL A;  3GTG A;  3LRD A;  2MP0 A;  2Y0N A;  2X0O A;  2K3N A;  3LR2 A;  1ZYM A;  4C6G A;  2EZB A;  3NZ4 A;  1SFO A;  1YNJ D;  2A68 D;  1I3Q A;  2F5J A;  2R92 A;  1Y2M A;  3EZE A;  2HRO A;  4C2M A;  2EZC A;  2YU9 A;  2N1D B;  2BE5 D;  1SMY D;  4BAB A;  2MX8 A;  1EZA A;  4V2Q A;  1TWC A;  2EZA A;  1W27 A;  1TWG A;  3GTJ A;  2A69 D;  2CW0 D;  1Y1W A;  4CEJ A;  2MX9 A;  1HQM D;  2X0Q A;  4CEI A;  2LKM B;  2VK9 A;  4CQ5 A;  2LTH A;  2FIP A;  3GTQ A; 
#chains in the Genus database with same CATH homology
 3GTO A;  4QIW A;  1TWF A;  3GTK A;  2JA6 A;  2MQA A;  1I6V D;  2R93 A;  1TWA A;  2K3O A;  1IW7 D;  3U4Q A;  2K3Q A;  1K83 A;  2LPJ A;  2A6H D;  1Y1V A;  2LPI A;  2NVY A;  3FKI A;  2R7Z A;  2O5J D;  3GTP A;  4FBS A;  2N3E A;  2JA7 A;  2VUM A;  3LR8 A;  2LYI A;  2NVX A;  4CEH A;  1ZYR D;  5IZ2 A;  2JA5 A;  1TWH A;  3U44 A;  2B63 A;  1I50 A;  1WCM A;  3GTM A;  3CQZ A;  1R9T A;  3H0G A;  2A6E D;  2E2I A;  2FIO A;  2X0P A;  2E2H A;  2AQL A;  3LR6 A;  1YNN D;  3GTL A;  3GTG A;  3LRD A;  2Y0N A;  2X0O A;  2K3N A;  3LR2 A;  1SFO A;  1YNJ D;  2A68 D;  1I3Q A;  2F5J A;  2R92 A;  4C2M A;  2YU9 A;  2N1D B;  2BE5 D;  1SMY D;  2MX8 A;  1TWC A;  1TWG A;  3GTJ A;  2A69 D;  2CW0 D;  1Y1W A;  4CEJ A;  2MX9 A;  1HQM D;  2X0Q A;  4CEI A;  2LKM B;  2VK9 A;  2LTH A;  2FIP A;  3GTQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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