2K3OA

Solution structure of the type 2 repetitive domain (tusp1-rp2) of the egg case silk from nephila antipodiana
Total Genus 44
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
129
structure length
129
Chain Sequence
SYSSAFAQAASSSLATSSAISRAFASVSSASAASSLAYNIGLSAARSLGIASDTALAGALAQAVGGVGAGASASAYANAIARAAGQFLATQGVLNAVNASSLGSALANALSDSAANSAVSGNYLGVSQN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Structural protein
molecule keywords TuSp1
publication title Solution structure of eggcase silk protein and its implications for silk fiber formation
pubmed doi rcsb
source organism Nephila antipodiana
total genus 44
structure length 129
sequence length 129
ec nomenclature
pdb deposition date 2008-05-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.60 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Enzyme I; Chain A, domain 2 2k3oA00
2MQAA 2K3NA 2K3OA 2LYIA
chains in the Genus database with same CATH superfamily
1K83A 2F5JA 2CW0D 3GTKA 2B63A 3LR8A 1IW7D 1I50A 1SMYD 2JA6A 1SFOA 3LRDA 1ZYRD 2N1DB 2EZCA 4V2RA 2Y0NA 4BAAA 2K3QA 2HWGA 2MP0A 3CQZA 2A68D 3NZ4A 2LKMB 2A6HD 2MQAA 2LPIA 3EZAA 3LR2A 1Y2MA 2VK9A 2R93A 2JA7A 4C5SA 1TWCA 3GTPA 2K3OA 2FIOA 2E2HA 1T6PA 2LTHA 3EZEA 3GTOA 2NVYA 2MX8A 1WCMA 1HQMD 1R9TA 4CEJA 1TWGA 2R92A 1Y1VA 5IZ2A 2BE5D 2EZBA 2HROA 2E2IA 4CEHA 4C6GA 3GTQA 1ZYMA 3GTJA 3GTMA 2AQLA 2YU9A 1YNJD 3EZBA 2A6ED 1TWHA 4CEIA 2X0OA 2K3NA 2A69D 2YIIA 2VUMA 4C5RA 1TWAA 1EZAA 1W27A 3GTGA 2X0PA 2LPJA 3U4QA 1TWFA 2FIPA 4CQ5A 2R7ZA 1T6JA 3U44A 1I3QA 3GTLA 4C5UA 4BABA 2MX9A 1Y1WA 1I6VD 4QIWA 2LYIA 1YNND 3FKIA 1EZBA 4C2MA 2N3EA 3LR6A 4FBSA 2O5JD 2JA5A 4V2QA 2NVXA 2X0QA 2EZAA 3H0GA
chains in the Genus database with same CATH topology
1K83A 2F5JA 2CW0D 3GTKA 2B63A 3LR8A 1IW7D 1I50A 1SMYD 2JA6A 1SFOA 3LRDA 1ZYRD 2N1DB 2Y0NA 2K3QA 3CQZA 2A68D 2LKMB 2A6HD 2MQAA 2LPIA 3LR2A 2VK9A 2R93A 2JA7A 1TWCA 3GTPA 2K3OA 2FIOA 2E2HA 2LTHA 3GTOA 2NVYA 2MX8A 1WCMA 1HQMD 1R9TA 4CEJA 1TWGA 2R92A 1Y1VA 5IZ2A 2BE5D 2E2IA 4CEHA 3GTQA 3GTJA 3GTMA 2AQLA 2YU9A 1YNJD 2A6ED 1TWHA 4CEIA 2X0OA 2K3NA 2A69D 2VUMA 1TWAA 3GTGA 2X0PA 2LPJA 3U4QA 1TWFA 2FIPA 2R7ZA 3U44A 1I3QA 3GTLA 2MX9A 1Y1WA 1I6VD 4QIWA 2LYIA 1YNND 3FKIA 4C2MA 2N3EA 3LR6A 4FBSA 2O5JD 2JA5A 2NVXA 2X0QA 3H0GA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2MQA A;  2K3N A;  2K3O A;  2LYI A; 
#chains in the Genus database with same CATH topology
 1K83 A;  2F5J A;  2CW0 D;  3GTK A;  2B63 A;  3LR8 A;  1IW7 D;  1I50 A;  1SMY D;  2JA6 A;  1SFO A;  3LRD A;  1ZYR D;  2N1D B;  2EZC A;  4V2R A;  2Y0N A;  4BAA A;  2K3Q A;  2HWG A;  2MP0 A;  3CQZ A;  2A68 D;  3NZ4 A;  2LKM B;  2A6H D;  2MQA A;  2LPI A;  3EZA A;  3LR2 A;  1Y2M A;  2VK9 A;  2R93 A;  2JA7 A;  4C5S A;  1TWC A;  3GTP A;  2K3O A;  2FIO A;  2E2H A;  1T6P A;  2LTH A;  3EZE A;  3GTO A;  2NVY A;  2MX8 A;  1WCM A;  1HQM D;  1R9T A;  4CEJ A;  1TWG A;  2R92 A;  1Y1V A;  5IZ2 A;  2BE5 D;  2EZB A;  2HRO A;  2E2I A;  4CEH A;  4C6G A;  3GTQ A;  1ZYM A;  3GTJ A;  3GTM A;  2AQL A;  2YU9 A;  1YNJ D;  3EZB A;  2A6E D;  1TWH A;  4CEI A;  2X0O A;  2K3N A;  2A69 D;  2YII A;  2VUM A;  4C5R A;  1TWA A;  1EZA A;  1W27 A;  3GTG A;  2X0P A;  2LPJ A;  3U4Q A;  1TWF A;  2FIP A;  4CQ5 A;  2R7Z A;  1T6J A;  3U44 A;  1I3Q A;  3GTL A;  4C5U A;  4BAB A;  2MX9 A;  1Y1W A;  1I6V D;  4QIW A;  2LYI A;  1YNN D;  3FKI A;  1EZB A;  4C2M A;  2N3E A;  3LR6 A;  4FBS A;  2O5J D;  2JA5 A;  4V2Q A;  2NVX A;  2X0Q A;  2EZA A;  3H0G A; 
#chains in the Genus database with same CATH homology
 1K83 A;  2F5J A;  2CW0 D;  3GTK A;  2B63 A;  3LR8 A;  1IW7 D;  1I50 A;  1SMY D;  2JA6 A;  1SFO A;  3LRD A;  1ZYR D;  2N1D B;  2Y0N A;  2K3Q A;  3CQZ A;  2A68 D;  2LKM B;  2A6H D;  2MQA A;  2LPI A;  3LR2 A;  2VK9 A;  2R93 A;  2JA7 A;  1TWC A;  3GTP A;  2K3O A;  2FIO A;  2E2H A;  2LTH A;  3GTO A;  2NVY A;  2MX8 A;  1WCM A;  1HQM D;  1R9T A;  4CEJ A;  1TWG A;  2R92 A;  1Y1V A;  5IZ2 A;  2BE5 D;  2E2I A;  4CEH A;  3GTQ A;  3GTJ A;  3GTM A;  2AQL A;  2YU9 A;  1YNJ D;  2A6E D;  1TWH A;  4CEI A;  2X0O A;  2K3N A;  2A69 D;  2VUM A;  1TWA A;  3GTG A;  2X0P A;  2LPJ A;  3U4Q A;  1TWF A;  2FIP A;  2R7Z A;  3U44 A;  1I3Q A;  3GTL A;  2MX9 A;  1Y1W A;  1I6V D;  4QIW A;  2LYI A;  1YNN D;  3FKI A;  4C2M A;  2N3E A;  3LR6 A;  4FBS A;  2O5J D;  2JA5 A;  2NVX A;  2X0Q A;  3H0G A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...