2LYIA

Repetitive domain (rp) of aciniform spidroin 1 from nephila antipodiana
Total Genus 58
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
167
structure length
167
Chain Sequence
MHHHHHHSGSLGDQLTSTLASALTKTNTLKAVSASKPSANVAVAIVTSGLKKALGALRINAGVSSQLTSAVSQAVANVRPGSSPAVYAKAIAAPSVQILVSSGSVNNNNAKQVASTLSENLVREMANTARRYRVNVPEASVQADVSLVTSMTSTFVISSQTSVQMGG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords PROTEIN (entity)
publication title NMR structure note: repetitive domain of aciniform spidroin 1 from Nephila antipodiana
pubmed doi rcsb
source organism Nephila antipodiana
total genus 58
structure length 167
sequence length 167
ec nomenclature
pdb deposition date 2012-09-18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.60 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Enzyme I; Chain A, domain 2 2lyiA01
2MQAA 2K3OA 2LYIA 2K3NA
chains in the Genus database with same CATH superfamily
2AQLA 2LTHA 4C6GA 2JA5A 2A6HD 2BE5D 1TWHA 3U44A 1IW7D 2B63A 2CW0D 1R9TA 1T6PA 4QIWA 4V2QA 2X0PA 4CEJA 5IZ2A 3GTOA 1K83A 3GTGA 2YIIA 2N3EA 2EZAA 3LR2A 4V2RA 4C2MA 2F5JA 2MX8A 2X0QA 2HROA 1WCMA 2JA7A 2Y0NA 1I3QA 3EZBA 1Y2MA 4FBSA 2NVXA 4BABA 3GTMA 3LRDA 1YNND 3GTKA 4C5UA 1TWGA 1W27A 3GTLA 2E2HA 2N1DB 2R92A 2HWGA 3LR8A 4CEHA 3U4QA 3EZEA 3GTJA 3GTPA 2JA6A 3LR6A 1EZAA 2EZBA 2LYIA 2MP0A 2A6ED 2VK9A 1TWAA 4CQ5A 2K3OA 2FIPA 2FIOA 1ZYMA 4CEIA 1ZYRD 2EZCA 2A68D 2NVYA 1HQMD 3H0GA 2O5JD 1I6VD 4C5SA 3FKIA 1SFOA 4C5RA 2LKMB 2MQAA 2VUMA 2LPJA 3CQZA 2YU9A 3NZ4A 2R93A 2A69D 2X0OA 1TWFA 1SMYD 2K3NA 4BAAA 1EZBA 2R7ZA 1Y1VA 3GTQA 2LPIA 1YNJD 1I50A 3EZAA 2K3QA 1T6JA 2MX9A 2E2IA 1TWCA 1Y1WA
chains in the Genus database with same CATH topology
2AQLA 2LTHA 2JA5A 2A6HD 2BE5D 1TWHA 3U44A 1IW7D 2B63A 2CW0D 1R9TA 4QIWA 2X0PA 4CEJA 5IZ2A 3GTOA 1K83A 3GTGA 2N3EA 3LR2A 4C2MA 2F5JA 2MX8A 2X0QA 1WCMA 2JA7A 2Y0NA 1I3QA 4FBSA 2NVXA 3GTMA 3LRDA 1YNND 3GTKA 1TWGA 3GTLA 2E2HA 2N1DB 2R92A 3LR8A 4CEHA 3U4QA 3GTJA 3GTPA 2JA6A 3LR6A 2LYIA 2A6ED 2VK9A 1TWAA 2K3OA 2FIPA 2FIOA 4CEIA 1ZYRD 2A68D 2NVYA 1HQMD 3H0GA 2O5JD 1I6VD 3FKIA 1SFOA 2LKMB 2MQAA 2VUMA 2LPJA 2R93A 3CQZA 2YU9A 2A69D 2X0OA 1TWFA 1SMYD 2K3NA 2R7ZA 1Y1VA 3GTQA 2LPIA 1YNJD 1I50A 2K3QA 2MX9A 2E2IA 1TWCA 1Y1WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2MQA A;  2K3O A;  2LYI A;  2K3N A; 
#chains in the Genus database with same CATH topology
 2AQL A;  2LTH A;  4C6G A;  2JA5 A;  2A6H D;  2BE5 D;  1TWH A;  3U44 A;  1IW7 D;  2B63 A;  2CW0 D;  1R9T A;  1T6P A;  4QIW A;  4V2Q A;  2X0P A;  4CEJ A;  5IZ2 A;  3GTO A;  1K83 A;  3GTG A;  2YII A;  2N3E A;  2EZA A;  3LR2 A;  4V2R A;  4C2M A;  2F5J A;  2MX8 A;  2X0Q A;  2HRO A;  1WCM A;  2JA7 A;  2Y0N A;  1I3Q A;  3EZB A;  1Y2M A;  4FBS A;  2NVX A;  4BAB A;  3GTM A;  3LRD A;  1YNN D;  3GTK A;  4C5U A;  1TWG A;  1W27 A;  3GTL A;  2E2H A;  2N1D B;  2R92 A;  2HWG A;  3LR8 A;  4CEH A;  3U4Q A;  3EZE A;  3GTJ A;  3GTP A;  2JA6 A;  3LR6 A;  1EZA A;  2EZB A;  2LYI A;  2MP0 A;  2A6E D;  2VK9 A;  1TWA A;  4CQ5 A;  2K3O A;  2FIP A;  2FIO A;  1ZYM A;  4CEI A;  1ZYR D;  2EZC A;  2A68 D;  2NVY A;  1HQM D;  3H0G A;  2O5J D;  1I6V D;  4C5S A;  3FKI A;  1SFO A;  4C5R A;  2LKM B;  2MQA A;  2VUM A;  2LPJ A;  3CQZ A;  2YU9 A;  3NZ4 A;  2R93 A;  2A69 D;  2X0O A;  1TWF A;  1SMY D;  2K3N A;  4BAA A;  1EZB A;  2R7Z A;  1Y1V A;  3GTQ A;  2LPI A;  1YNJ D;  1I50 A;  3EZA A;  2K3Q A;  1T6J A;  2MX9 A;  2E2I A;  1TWC A;  1Y1W A; 
#chains in the Genus database with same CATH homology
 2AQL A;  2LTH A;  2JA5 A;  2A6H D;  2BE5 D;  1TWH A;  3U44 A;  1IW7 D;  2B63 A;  2CW0 D;  1R9T A;  4QIW A;  2X0P A;  4CEJ A;  5IZ2 A;  3GTO A;  1K83 A;  3GTG A;  2N3E A;  3LR2 A;  4C2M A;  2F5J A;  2MX8 A;  2X0Q A;  1WCM A;  2JA7 A;  2Y0N A;  1I3Q A;  4FBS A;  2NVX A;  3GTM A;  3LRD A;  1YNN D;  3GTK A;  1TWG A;  3GTL A;  2E2H A;  2N1D B;  2R92 A;  3LR8 A;  4CEH A;  3U4Q A;  3GTJ A;  3GTP A;  2JA6 A;  3LR6 A;  2LYI A;  2A6E D;  2VK9 A;  1TWA A;  2K3O A;  2FIP A;  2FIO A;  4CEI A;  1ZYR D;  2A68 D;  2NVY A;  1HQM D;  3H0G A;  2O5J D;  1I6V D;  3FKI A;  1SFO A;  2LKM B;  2MQA A;  2VUM A;  2LPJ A;  2R93 A;  3CQZ A;  2YU9 A;  2A69 D;  2X0O A;  1TWF A;  1SMY D;  2K3N A;  2R7Z A;  1Y1V A;  3GTQ A;  2LPI A;  1YNJ D;  1I50 A;  2K3Q A;  2MX9 A;  2E2I A;  1TWC A;  1Y1W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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