2LYIA

Repetitive domain (rp) of aciniform spidroin 1 from nephila antipodiana
Total Genus 58
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
167
structure length
167
Chain Sequence
b'MHHHHHHSGSLGDQLTSTLASALTKTNTLKAVSASKPSANVAVAIVTSGLKKALGALRINAGVSSQLTSAVSQAVANVRPGSSPAVYAKAIAAPSVQILVSSGSVNNNNAKQVASTLSENLVREMANTARRYRVNVPEASVQADVSLVTSMTSTFVISSQTSVQMGG'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords PROTEIN (entity)
publication title NMR structure note: repetitive domain of aciniform spidroin 1 from Nephila antipodiana
pubmed doi rcsb
source organism Nephila antipodiana
molecule tags Structural protein
total genus 58
structure length 167
sequence length 167
ec nomenclature
pdb deposition date 2012-09-18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.60 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Enzyme I; Chain A, domain 2 2lyiA01
2K3OA 2LYIA 2K3NA 2MQAA
chains in the Genus database with same CATH superfamily
3LR8A 2N1DB 4C5RA 3GTGA 2R93A 2A69D 2LKMB 2X0OA 3GTOA 2X0QA 1IW7D 2MQAA 2F5JA 2LPJA 3GTPA 2K3NA 2K3QA 2O5JD 3EZEA 1I3QA 2JA7A 1T6JA 1TWAA 2YIIA 4BABA 1W27A 3U4QA 3H0GA 1ZYRD 3LR6A 4BAAA 2MP0A 4C5UA 1YNND 3GTQA 1WCMA 2EZBA 4CEJA 4FBSA 1I50A 2HWGA 1EZBA 1TWCA 1Y1WA 2A6HD 2NVYA 3NZ4A 1TWHA 2B63A 1YNJD 2EZCA 4C6GA 2N3EA 4CQ5A 2LTHA 2FIOA 2JA6A 3GTLA 2FIPA 2R92A 2CW0D 1TWGA 2YU9A 3GTKA 2A68D 1TWFA 4V2RA 1Y1VA 1R9TA 3GTMA 2BE5D 3CQZA 2Y0NA 3LR2A 2MX8A 1SMYD 1T6PA 2A6ED 2HROA 3U44A 2AQLA 2VK9A 2X0PA 4CEIA 2EZAA 4V2QA 2LYIA 1Y2MA 1EZAA 3GTJA 2MX9A 1SFOA 1HQMD 2JA5A 3EZAA 1I6VD 3LRDA 3FKIA 4QIWA 1ZYMA 4C5SA 2K3OA 2E2IA 2VUMA 1K83A 2NVXA 2LPIA 3EZBA 2R7ZA 4C2MA 4CEHA 5IZ2A 2E2HA
chains in the Genus database with same CATH topology
3LR8A 2N1DB 3GTGA 2R93A 2A69D 2LKMB 2X0OA 3GTOA 2X0QA 1IW7D 2MQAA 2F5JA 2LPJA 3GTPA 2K3NA 2K3QA 2O5JD 1I3QA 2JA7A 1TWAA 3U4QA 3H0GA 1ZYRD 3LR6A 1YNND 3GTQA 1WCMA 4CEJA 4FBSA 1I50A 1TWCA 1Y1WA 2A6HD 2NVYA 1TWHA 2B63A 1YNJD 2N3EA 2LTHA 2FIOA 2JA6A 3GTLA 2FIPA 2R92A 2CW0D 1TWGA 2YU9A 3GTKA 2A68D 1TWFA 1Y1VA 1R9TA 3GTMA 2BE5D 3CQZA 2Y0NA 3LR2A 2MX8A 1SMYD 2A6ED 3U44A 2AQLA 2VK9A 2X0PA 4CEIA 2LYIA 3GTJA 2MX9A 1SFOA 1HQMD 2JA5A 1I6VD 3LRDA 3FKIA 4QIWA 2E2IA 2K3OA 2VUMA 1K83A 2NVXA 2LPIA 2R7ZA 4C2MA 4CEHA 5IZ2A 2E2HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2K3O A;  2LYI A;  2K3N A;  2MQA A; 
#chains in the Genus database with same CATH topology
 3LR8 A;  2N1D B;  4C5R A;  3GTG A;  2R93 A;  2A69 D;  2LKM B;  2X0O A;  3GTO A;  2X0Q A;  1IW7 D;  2MQA A;  2F5J A;  2LPJ A;  3GTP A;  2K3N A;  2K3Q A;  2O5J D;  3EZE A;  1I3Q A;  2JA7 A;  1T6J A;  1TWA A;  2YII A;  4BAB A;  1W27 A;  3U4Q A;  3H0G A;  1ZYR D;  3LR6 A;  4BAA A;  2MP0 A;  4C5U A;  1YNN D;  3GTQ A;  1WCM A;  2EZB A;  4CEJ A;  4FBS A;  1I50 A;  2HWG A;  1EZB A;  1TWC A;  1Y1W A;  2A6H D;  2NVY A;  3NZ4 A;  1TWH A;  2B63 A;  1YNJ D;  2EZC A;  4C6G A;  2N3E A;  4CQ5 A;  2LTH A;  2FIO A;  2JA6 A;  3GTL A;  2FIP A;  2R92 A;  2CW0 D;  1TWG A;  2YU9 A;  3GTK A;  2A68 D;  1TWF A;  4V2R A;  1Y1V A;  1R9T A;  3GTM A;  2BE5 D;  3CQZ A;  2Y0N A;  3LR2 A;  2MX8 A;  1SMY D;  1T6P A;  2A6E D;  2HRO A;  3U44 A;  2AQL A;  2VK9 A;  2X0P A;  4CEI A;  2EZA A;  4V2Q A;  2LYI A;  1Y2M A;  1EZA A;  3GTJ A;  2MX9 A;  1SFO A;  1HQM D;  2JA5 A;  3EZA A;  1I6V D;  3LRD A;  3FKI A;  4QIW A;  1ZYM A;  4C5S A;  2K3O A;  2E2I A;  2VUM A;  1K83 A;  2NVX A;  2LPI A;  3EZB A;  2R7Z A;  4C2M A;  4CEH A;  5IZ2 A;  2E2H A; 
#chains in the Genus database with same CATH homology
 3LR8 A;  2N1D B;  3GTG A;  2R93 A;  2A69 D;  2LKM B;  2X0O A;  3GTO A;  2X0Q A;  1IW7 D;  2MQA A;  2F5J A;  2LPJ A;  3GTP A;  2K3N A;  2K3Q A;  2O5J D;  1I3Q A;  2JA7 A;  1TWA A;  3U4Q A;  3H0G A;  1ZYR D;  3LR6 A;  1YNN D;  3GTQ A;  1WCM A;  4CEJ A;  4FBS A;  1I50 A;  1TWC A;  1Y1W A;  2A6H D;  2NVY A;  1TWH A;  2B63 A;  1YNJ D;  2N3E A;  2LTH A;  2FIO A;  2JA6 A;  3GTL A;  2FIP A;  2R92 A;  2CW0 D;  1TWG A;  2YU9 A;  3GTK A;  2A68 D;  1TWF A;  1Y1V A;  1R9T A;  3GTM A;  2BE5 D;  3CQZ A;  2Y0N A;  3LR2 A;  2MX8 A;  1SMY D;  2A6E D;  3U44 A;  2AQL A;  2VK9 A;  2X0P A;  4CEI A;  2LYI A;  3GTJ A;  2MX9 A;  1SFO A;  1HQM D;  2JA5 A;  1I6V D;  3LRD A;  3FKI A;  4QIW A;  2E2I A;  2K3O A;  2VUM A;  1K83 A;  2NVX A;  2LPI A;  2R7Z A;  4C2M A;  4CEH A;  5IZ2 A;  2E2H A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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