2LYIA

Repetitive domain (rp) of aciniform spidroin 1 from nephila antipodiana
Total Genus 58
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
167
structure length
167
Chain Sequence
MHHHHHHSGSLGDQLTSTLASALTKTNTLKAVSASKPSANVAVAIVTSGLKKALGALRINAGVSSQLTSAVSQAVANVRPGSSPAVYAKAIAAPSVQILVSSGSVNNNNAKQVASTLSENLVREMANTARRYRVNVPEASVQADVSLVTSMTSTFVISSQTSVQMGG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords PROTEIN (entity)
publication title NMR structure note: repetitive domain of aciniform spidroin 1 from Nephila antipodiana
pubmed doi rcsb
source organism Nephila antipodiana
molecule tags Structural protein
total genus 58
structure length 167
sequence length 167
ec nomenclature
pdb deposition date 2012-09-18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.60 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Enzyme I; Chain A, domain 2 2lyiA01
2MQAA 2LYIA 2K3OA 2K3NA
chains in the Genus database with same CATH superfamily
1Y1WA 1T6PA 2X0QA 2NVYA 2JA5A 2CW0D 2LPIA 2A68D 2EZCA 3GTJA 1WCMA 3GTKA 3U44A 2A69D 1ZYMA 1TWFA 3FKIA 3EZAA 3EZEA 1TWAA 2K3QA 1I3QA 1ZYRD 2R93A 3GTPA 4CEJA 2X0OA 2HROA 2NVXA 2MX8A 5IZ2A 2EZAA 2YU9A 3LR2A 2R92A 2FIOA 1T6JA 1EZAA 4C6GA 3GTOA 3GTGA 4V2RA 4CEHA 1Y1VA 2K3NA 1SMYD 1I50A 3NZ4A 2MP0A 3GTLA 2HWGA 2AQLA 4BAAA 2A6HD 2EZBA 2LPJA 2F5JA 2MQAA 2N3EA 4C2MA 2E2HA 4BABA 4V2QA 2LTHA 4C5SA 4FBSA 1SFOA 1TWHA 3GTQA 1YNND 1TWCA 1I6VD 3CQZA 1Y2MA 1TWGA 2MX9A 2N1DB 2Y0NA 2R7ZA 2B63A 4C5RA 4CEIA 1W27A 2BE5D 3GTMA 4QIWA 2X0PA 4CQ5A 3U4QA 3H0GA 3LRDA 2O5JD 3EZBA 2LKMB 2VUMA 2A6ED 1EZBA 3LR6A 2LYIA 2FIPA 2YIIA 1R9TA 2VK9A 4C5UA 1IW7D 2K3OA 3LR8A 2JA7A 1HQMD 2JA6A 2E2IA 1K83A 1YNJD
chains in the Genus database with same CATH topology
1Y1WA 2X0QA 2NVYA 2JA5A 2CW0D 2LPIA 2A68D 3GTJA 1WCMA 3GTKA 3U44A 2A69D 1TWFA 3FKIA 1TWAA 2K3QA 1I3QA 1ZYRD 2R93A 3GTPA 4CEJA 2X0OA 2NVXA 2MX8A 5IZ2A 2YU9A 3LR2A 2R92A 2FIOA 3GTOA 3GTGA 4CEHA 1Y1VA 2K3NA 1SMYD 1I50A 3GTLA 2AQLA 2A6HD 2LPJA 2F5JA 2MQAA 2N3EA 4C2MA 2E2HA 2LTHA 4FBSA 1SFOA 1TWHA 3GTQA 1YNND 1TWCA 1I6VD 3CQZA 1TWGA 2MX9A 2N1DB 2Y0NA 2R7ZA 2B63A 4CEIA 2BE5D 3GTMA 4QIWA 2X0PA 3U4QA 3H0GA 3LRDA 2O5JD 2VUMA 2LKMB 2A6ED 3LR6A 2LYIA 2FIPA 1R9TA 2VK9A 1IW7D 2K3OA 3LR8A 2JA7A 1HQMD 2JA6A 2E2IA 1K83A 1YNJD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2MQA A;  2LYI A;  2K3O A;  2K3N A; 
#chains in the Genus database with same CATH topology
 1Y1W A;  1T6P A;  2X0Q A;  2NVY A;  2JA5 A;  2CW0 D;  2LPI A;  2A68 D;  2EZC A;  3GTJ A;  1WCM A;  3GTK A;  3U44 A;  2A69 D;  1ZYM A;  1TWF A;  3FKI A;  3EZA A;  3EZE A;  1TWA A;  2K3Q A;  1I3Q A;  1ZYR D;  2R93 A;  3GTP A;  4CEJ A;  2X0O A;  2HRO A;  2NVX A;  2MX8 A;  5IZ2 A;  2EZA A;  2YU9 A;  3LR2 A;  2R92 A;  2FIO A;  1T6J A;  1EZA A;  4C6G A;  3GTO A;  3GTG A;  4V2R A;  4CEH A;  1Y1V A;  2K3N A;  1SMY D;  1I50 A;  3NZ4 A;  2MP0 A;  3GTL A;  2HWG A;  2AQL A;  4BAA A;  2A6H D;  2EZB A;  2LPJ A;  2F5J A;  2MQA A;  2N3E A;  4C2M A;  2E2H A;  4BAB A;  4V2Q A;  2LTH A;  4C5S A;  4FBS A;  1SFO A;  1TWH A;  3GTQ A;  1YNN D;  1TWC A;  1I6V D;  3CQZ A;  1Y2M A;  1TWG A;  2MX9 A;  2N1D B;  2Y0N A;  2R7Z A;  2B63 A;  4C5R A;  4CEI A;  1W27 A;  2BE5 D;  3GTM A;  4QIW A;  2X0P A;  4CQ5 A;  3U4Q A;  3H0G A;  3LRD A;  2O5J D;  3EZB A;  2LKM B;  2VUM A;  2A6E D;  1EZB A;  3LR6 A;  2LYI A;  2FIP A;  2YII A;  1R9T A;  2VK9 A;  4C5U A;  1IW7 D;  2K3O A;  3LR8 A;  2JA7 A;  1HQM D;  2JA6 A;  2E2I A;  1K83 A;  1YNJ D; 
#chains in the Genus database with same CATH homology
 1Y1W A;  2X0Q A;  2NVY A;  2JA5 A;  2CW0 D;  2LPI A;  2A68 D;  3GTJ A;  1WCM A;  3GTK A;  3U44 A;  2A69 D;  1TWF A;  3FKI A;  1TWA A;  2K3Q A;  1I3Q A;  1ZYR D;  2R93 A;  3GTP A;  4CEJ A;  2X0O A;  2NVX A;  2MX8 A;  5IZ2 A;  2YU9 A;  3LR2 A;  2R92 A;  2FIO A;  3GTO A;  3GTG A;  4CEH A;  1Y1V A;  2K3N A;  1SMY D;  1I50 A;  3GTL A;  2AQL A;  2A6H D;  2LPJ A;  2F5J A;  2MQA A;  2N3E A;  4C2M A;  2E2H A;  2LTH A;  4FBS A;  1SFO A;  1TWH A;  3GTQ A;  1YNN D;  1TWC A;  1I6V D;  3CQZ A;  1TWG A;  2MX9 A;  2N1D B;  2Y0N A;  2R7Z A;  2B63 A;  4CEI A;  2BE5 D;  3GTM A;  4QIW A;  2X0P A;  3U4Q A;  3H0G A;  3LRD A;  2O5J D;  2VUM A;  2LKM B;  2A6E D;  3LR6 A;  2LYI A;  2FIP A;  1R9T A;  2VK9 A;  1IW7 D;  2K3O A;  3LR8 A;  2JA7 A;  1HQM D;  2JA6 A;  2E2I A;  1K83 A;  1YNJ D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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