2LYIA

Repetitive domain (rp) of aciniform spidroin 1 from nephila antipodiana
Total Genus 58
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
167
structure length
167
Chain Sequence
MHHHHHHSGSLGDQLTSTLASALTKTNTLKAVSASKPSANVAVAIVTSGLKKALGALRINAGVSSQLTSAVSQAVANVRPGSSPAVYAKAIAAPSVQILVSSGSVNNNNAKQVASTLSENLVREMANTARRYRVNVPEASVQADVSLVTSMTSTFVISSQTSVQMGG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title NMR structure note: repetitive domain of aciniform spidroin 1 from Nephila antipodiana
pubmed doi rcsb
source organism Nephila antipodiana
molecule tags Structural protein
molecule keywords PROTEIN (entity)
total genus 58
structure length 167
sequence length 167
ec nomenclature
pdb deposition date 2012-09-18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.60 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Enzyme I; Chain A, domain 2 2lyiA01
2K3OA 2LYIA 2K3NA 2MQAA
chains in the Genus database with same CATH superfamily
1ZYMA 2MQAA 4C5SA 3LR8A 4CQ5A 3GTPA 2LPJA 2E2HA 4C5RA 2NVYA 2JA6A 5IZ2A 2R93A 2NVXA 4C5UA 2K3OA 1SFOA 2YU9A 2MP0A 2A68D 2R7ZA 1SMYD 2X0QA 2F5JA 3GTLA 1HQMD 3EZBA 3U4QA 2BE5D 1TWHA 2AQLA 3GTOA 2N1DB 4BABA 2YIIA 3CQZA 2X0PA 3EZEA 4C6GA 1Y1WA 1Y2MA 3NZ4A 4C2MA 1K83A 2VK9A 2FIPA 3U44A 2EZBA 4BAAA 2A6HD 3LR2A 2E2IA 2A6ED 1T6JA 4CEIA 4CEJA 2K3QA 3GTMA 3LR6A 2CW0D 2JA5A 4FBSA 1W27A 4V2RA 1I3QA 1I50A 1YNND 2LYIA 1ZYRD 3GTGA 2LTHA 2R92A 2VUMA 2K3NA 4V2QA 3GTQA 4CEHA 1TWCA 1TWGA 2HWGA 3LRDA 4QIWA 2EZCA 2O5JD 1EZBA 2LPIA 2LKMB 2A69D 3FKIA 1Y1VA 3GTJA 2HROA 2B63A 2FIOA 1EZAA 2N3EA 3H0GA 2X0OA 3EZAA 2MX8A 1TWFA 1WCMA 1I6VD 2EZAA 2MX9A 1R9TA 3GTKA 1YNJD 2JA7A 1T6PA 1TWAA 1IW7D 2Y0NA
chains in the Genus database with same CATH topology
2MQAA 3LR8A 3GTPA 2LPJA 2E2HA 2JA6A 2NVYA 5IZ2A 2R93A 2NVXA 2K3OA 1SFOA 2YU9A 2A68D 2R7ZA 1SMYD 2X0QA 2F5JA 3GTLA 1HQMD 3U4QA 2BE5D 1TWHA 2AQLA 3GTOA 2N1DB 3CQZA 2X0PA 1Y1WA 4C2MA 1K83A 2VK9A 2FIPA 3U44A 2A6HD 3LR2A 2E2IA 2A6ED 4CEIA 4CEJA 2K3QA 3GTMA 3LR6A 2CW0D 2JA5A 4FBSA 1I3QA 1I50A 1YNND 2LYIA 1ZYRD 3GTGA 2LTHA 2R92A 2VUMA 2K3NA 3GTQA 4CEHA 1TWCA 1TWGA 3LRDA 4QIWA 2O5JD 2LPIA 2LKMB 2A69D 3FKIA 1Y1VA 3GTJA 2B63A 2FIOA 3H0GA 2N3EA 2X0OA 2MX8A 1TWFA 1WCMA 1I6VD 2MX9A 1R9TA 3GTKA 1YNJD 2JA7A 1TWAA 1IW7D 2Y0NA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2K3O A;  2LYI A;  2K3N A;  2MQA A; 
#chains in the Genus database with same CATH topology
 1ZYM A;  2MQA A;  4C5S A;  3LR8 A;  4CQ5 A;  3GTP A;  2LPJ A;  2E2H A;  4C5R A;  2NVY A;  2JA6 A;  5IZ2 A;  2R93 A;  2NVX A;  4C5U A;  2K3O A;  1SFO A;  2YU9 A;  2MP0 A;  2A68 D;  2R7Z A;  1SMY D;  2X0Q A;  2F5J A;  3GTL A;  1HQM D;  3EZB A;  3U4Q A;  2BE5 D;  1TWH A;  2AQL A;  3GTO A;  2N1D B;  4BAB A;  2YII A;  3CQZ A;  2X0P A;  3EZE A;  4C6G A;  1Y1W A;  1Y2M A;  3NZ4 A;  4C2M A;  1K83 A;  2VK9 A;  2FIP A;  3U44 A;  2EZB A;  4BAA A;  2A6H D;  3LR2 A;  2E2I A;  2A6E D;  1T6J A;  4CEI A;  4CEJ A;  2K3Q A;  3GTM A;  3LR6 A;  2CW0 D;  2JA5 A;  4FBS A;  1W27 A;  4V2R A;  1I3Q A;  1I50 A;  1YNN D;  2LYI A;  1ZYR D;  3GTG A;  2LTH A;  2R92 A;  2VUM A;  2K3N A;  4V2Q A;  3GTQ A;  4CEH A;  1TWC A;  1TWG A;  2HWG A;  3LRD A;  4QIW A;  2EZC A;  2O5J D;  1EZB A;  2LPI A;  2LKM B;  2A69 D;  3FKI A;  1Y1V A;  3GTJ A;  2HRO A;  2B63 A;  2FIO A;  1EZA A;  2N3E A;  3H0G A;  2X0O A;  3EZA A;  2MX8 A;  1TWF A;  1WCM A;  1I6V D;  2EZA A;  2MX9 A;  1R9T A;  3GTK A;  1YNJ D;  2JA7 A;  1T6P A;  1TWA A;  1IW7 D;  2Y0N A; 
#chains in the Genus database with same CATH homology
 2MQA A;  3LR8 A;  3GTP A;  2LPJ A;  2E2H A;  2JA6 A;  2NVY A;  5IZ2 A;  2R93 A;  2NVX A;  2K3O A;  1SFO A;  2YU9 A;  2A68 D;  2R7Z A;  1SMY D;  2X0Q A;  2F5J A;  3GTL A;  1HQM D;  3U4Q A;  2BE5 D;  1TWH A;  2AQL A;  3GTO A;  2N1D B;  3CQZ A;  2X0P A;  1Y1W A;  4C2M A;  1K83 A;  2VK9 A;  2FIP A;  3U44 A;  2A6H D;  3LR2 A;  2E2I A;  2A6E D;  4CEI A;  4CEJ A;  2K3Q A;  3GTM A;  3LR6 A;  2CW0 D;  2JA5 A;  4FBS A;  1I3Q A;  1I50 A;  1YNN D;  2LYI A;  1ZYR D;  3GTG A;  2LTH A;  2R92 A;  2VUM A;  2K3N A;  3GTQ A;  4CEH A;  1TWC A;  1TWG A;  3LRD A;  4QIW A;  2O5J D;  2LPI A;  2LKM B;  2A69 D;  3FKI A;  1Y1V A;  3GTJ A;  2B63 A;  2FIO A;  3H0G A;  2N3E A;  2X0O A;  2MX8 A;  1TWF A;  1WCM A;  1I6V D;  2MX9 A;  1R9T A;  3GTK A;  1YNJ D;  2JA7 A;  1TWA A;  1IW7 D;  2Y0N A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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