2LYIA

Repetitive domain (rp) of aciniform spidroin 1 from nephila antipodiana
Total Genus 58
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
167
structure length
167
Chain Sequence
MHHHHHHSGSLGDQLTSTLASALTKTNTLKAVSASKPSANVAVAIVTSGLKKALGALRINAGVSSQLTSAVSQAVANVRPGSSPAVYAKAIAAPSVQILVSSGSVNNNNAKQVASTLSENLVREMANTARRYRVNVPEASVQADVSLVTSMTSTFVISSQTSVQMGG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
source organism Nephila antipodiana
publication title NMR structure note: repetitive domain of aciniform spidroin 1 from Nephila antipodiana
pubmed doi rcsb
molecule keywords PROTEIN (entity)
total genus 58
structure length 167
sequence length 167
ec nomenclature
pdb deposition date 2012-09-18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.60 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Enzyme I; Chain A, domain 2 2lyiA01
2MQAA 2K3NA 2K3OA 2LYIA
chains in the Genus database with same CATH superfamily
1TWHA 2K3QA 2A69D 2MX8A 2FIOA 1YNND 3EZEA 2MP0A 2E2HA 2X0OA 4CEJA 1Y1WA 1ZYRD 3NZ4A 2YIIA 3GTGA 3GTLA 1TWFA 2NVXA 2NVYA 2F5JA 3LR2A 2HWGA 2R7ZA 2MX9A 4BABA 1I6VD 2AQLA 2CW0D 1IW7D 4C5SA 3GTJA 2N1DB 1EZBA 3U44A 2EZAA 2HROA 1ZYMA 4C5UA 1I50A 1T6PA 2EZBA 2X0PA 1HQMD 2B63A 2EZCA 2LKMB 2VUMA 4CEIA 4V2RA 3CQZA 1Y2MA 3GTMA 2MQAA 4V2QA 3U4QA 2LYIA 2R92A 1SFOA 3EZBA 2A68D 3EZAA 5IZ2A 1TWAA 2K3NA 4BAAA 2O5JD 4FBSA 2VK9A 1WCMA 2LPIA 1TWGA 3FKIA 3LR8A 3GTKA 1W27A 2K3OA 1YNJD 2JA5A 2BE5D 2LTHA 2FIPA 3GTQA 1SMYD 4C2MA 2A6ED 1K83A 2LPJA 2X0QA 1TWCA 1EZAA 2E2IA 2JA7A 3LRDA 2JA6A 3H0GA 2A6HD 2YU9A 1R9TA 1T6JA 4QIWA 1Y1VA 1I3QA 4C6GA 4CEHA 2R93A 3GTOA 2N3EA 2Y0NA 3LR6A 4CQ5A 3GTPA 4C5RA
chains in the Genus database with same CATH topology
1TWHA 2K3QA 2A69D 2MX8A 2FIOA 1YNND 2E2HA 2X0OA 4CEJA 1Y1WA 1ZYRD 3GTGA 3GTLA 1TWFA 2NVXA 2NVYA 2F5JA 3LR2A 2R7ZA 2MX9A 1I6VD 2AQLA 2CW0D 1IW7D 3GTJA 2N1DB 3U44A 1I50A 2X0PA 1HQMD 2B63A 2LKMB 2VUMA 4CEIA 3CQZA 3GTMA 2MQAA 3U4QA 2LYIA 2R92A 1SFOA 2A68D 5IZ2A 1TWAA 2K3NA 2O5JD 4FBSA 2VK9A 1WCMA 2LPIA 1TWGA 3FKIA 3LR8A 3GTKA 2K3OA 1YNJD 2JA5A 2BE5D 2LTHA 2FIPA 3GTQA 1SMYD 4C2MA 2A6ED 1K83A 2LPJA 2X0QA 1TWCA 2E2IA 2JA7A 3LRDA 2JA6A 3H0GA 2A6HD 2YU9A 1R9TA 4QIWA 1Y1VA 1I3QA 4CEHA 2R93A 3GTOA 2N3EA 2Y0NA 3LR6A 3GTPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2MQA A;  2K3N A;  2K3O A;  2LYI A; 
#chains in the Genus database with same CATH topology
 1TWH A;  2K3Q A;  2A69 D;  2MX8 A;  2FIO A;  1YNN D;  3EZE A;  2MP0 A;  2E2H A;  2X0O A;  4CEJ A;  1Y1W A;  1ZYR D;  3NZ4 A;  2YII A;  3GTG A;  3GTL A;  1TWF A;  2NVX A;  2NVY A;  2F5J A;  3LR2 A;  2HWG A;  2R7Z A;  2MX9 A;  4BAB A;  1I6V D;  2AQL A;  2CW0 D;  1IW7 D;  4C5S A;  3GTJ A;  2N1D B;  1EZB A;  3U44 A;  2EZA A;  2HRO A;  1ZYM A;  4C5U A;  1I50 A;  1T6P A;  2EZB A;  2X0P A;  1HQM D;  2B63 A;  2EZC A;  2LKM B;  2VUM A;  4CEI A;  4V2R A;  3CQZ A;  1Y2M A;  3GTM A;  2MQA A;  4V2Q A;  3U4Q A;  2LYI A;  2R92 A;  1SFO A;  3EZB A;  2A68 D;  3EZA A;  5IZ2 A;  1TWA A;  2K3N A;  4BAA A;  2O5J D;  4FBS A;  2VK9 A;  1WCM A;  2LPI A;  1TWG A;  3FKI A;  3LR8 A;  3GTK A;  1W27 A;  2K3O A;  1YNJ D;  2JA5 A;  2BE5 D;  2LTH A;  2FIP A;  3GTQ A;  1SMY D;  4C2M A;  2A6E D;  1K83 A;  2LPJ A;  2X0Q A;  1TWC A;  1EZA A;  2E2I A;  2JA7 A;  3LRD A;  2JA6 A;  3H0G A;  2A6H D;  2YU9 A;  1R9T A;  1T6J A;  4QIW A;  1Y1V A;  1I3Q A;  4C6G A;  4CEH A;  2R93 A;  3GTO A;  2N3E A;  2Y0N A;  3LR6 A;  4CQ5 A;  3GTP A;  4C5R A; 
#chains in the Genus database with same CATH homology
 1TWH A;  2K3Q A;  2A69 D;  2MX8 A;  2FIO A;  1YNN D;  2E2H A;  2X0O A;  4CEJ A;  1Y1W A;  1ZYR D;  3GTG A;  3GTL A;  1TWF A;  2NVX A;  2NVY A;  2F5J A;  3LR2 A;  2R7Z A;  2MX9 A;  1I6V D;  2AQL A;  2CW0 D;  1IW7 D;  3GTJ A;  2N1D B;  3U44 A;  1I50 A;  2X0P A;  1HQM D;  2B63 A;  2LKM B;  2VUM A;  4CEI A;  3CQZ A;  3GTM A;  2MQA A;  3U4Q A;  2LYI A;  2R92 A;  1SFO A;  2A68 D;  5IZ2 A;  1TWA A;  2K3N A;  2O5J D;  4FBS A;  2VK9 A;  1WCM A;  2LPI A;  1TWG A;  3FKI A;  3LR8 A;  3GTK A;  2K3O A;  1YNJ D;  2JA5 A;  2BE5 D;  2LTH A;  2FIP A;  3GTQ A;  1SMY D;  4C2M A;  2A6E D;  1K83 A;  2LPJ A;  2X0Q A;  1TWC A;  2E2I A;  2JA7 A;  3LRD A;  2JA6 A;  3H0G A;  2A6H D;  2YU9 A;  1R9T A;  4QIW A;  1Y1V A;  1I3Q A;  4CEH A;  2R93 A;  3GTO A;  2N3E A;  2Y0N A;  3LR6 A;  3GTP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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