2LYIA

Repetitive domain (rp) of aciniform spidroin 1 from nephila antipodiana
Total Genus 58
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
167
structure length
167
Chain Sequence
b'MHHHHHHSGSLGDQLTSTLASALTKTNTLKAVSASKPSANVAVAIVTSGLKKALGALRINAGVSSQLTSAVSQAVANVRPGSSPAVYAKAIAAPSVQILVSSGSVNNNNAKQVASTLSENLVREMANTARRYRVNVPEASVQADVSLVTSMTSTFVISSQTSVQMGG'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title NMR structure note: repetitive domain of aciniform spidroin 1 from Nephila antipodiana
pubmed doi rcsb
molecule keywords PROTEIN (entity)
source organism Nephila antipodiana
molecule tags Structural protein
total genus 58
structure length 167
sequence length 167
ec nomenclature
pdb deposition date 2012-09-18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.60 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Enzyme I; Chain A, domain 2 2lyiA01
2K3OA 2K3NA 2LYIA 2MQAA
chains in the Genus database with same CATH superfamily
2R92A 2LPJA 4FBSA 4C5SA 3H0GA 3NZ4A 1TWAA 2N3EA 2R7ZA 2Y0NA 4C5UA 3LR2A 2HWGA 3GTQA 1T6JA 3GTLA 2F5JA 3GTMA 1TWGA 2E2HA 1TWFA 4V2RA 1SFOA 1IW7D 3GTGA 2A6HD 2X0QA 3LRDA 4V2QA 2YIIA 1ZYMA 2LYIA 4CEHA 3GTKA 2O5JD 3EZBA 2EZBA 4C2MA 3GTOA 1Y1WA 2MP0A 3GTPA 2MX9A 1HQMD 2VK9A 1EZBA 2A68D 2CW0D 3EZEA 3GTJA 1R9TA 2MQAA 2R93A 1Y2MA 4BAAA 2K3NA 3CQZA 2JA6A 2A69D 2MX8A 2K3QA 2EZCA 1T6PA 2N1DB 2K3OA 1Y1VA 2NVYA 1W27A 1EZAA 4C5RA 1I50A 1TWHA 2JA7A 2X0OA 1YNJD 1TWCA 1K83A 1ZYRD 4CQ5A 2FIPA 5IZ2A 3FKIA 2LPIA 3LR6A 4BABA 4CEIA 1SMYD 2YU9A 2HROA 3U44A 4CEJA 2B63A 2BE5D 2E2IA 2NVXA 1YNND 2VUMA 2EZAA 2X0PA 2LKMB 3EZAA 4C6GA 2FIOA 3U4QA 2AQLA 1I3QA 2JA5A 1I6VD 2LTHA 1WCMA 4QIWA 3LR8A 2A6ED
chains in the Genus database with same CATH topology
2R92A 2LPJA 4FBSA 3H0GA 1TWAA 2N3EA 2R7ZA 2Y0NA 3LR2A 3GTQA 3GTLA 2F5JA 3GTMA 1TWGA 2E2HA 1TWFA 1SFOA 1IW7D 3GTGA 2A6HD 2X0QA 3LRDA 2LYIA 4CEHA 3GTKA 2O5JD 4C2MA 3GTOA 1Y1WA 3GTPA 2MX9A 1HQMD 2VK9A 2A68D 2CW0D 3GTJA 1R9TA 2MQAA 2R93A 2K3NA 3CQZA 2JA6A 2A69D 2MX8A 2K3QA 2N1DB 2K3OA 1Y1VA 2NVYA 1I50A 1TWHA 2JA7A 2X0OA 1YNJD 1TWCA 1K83A 1ZYRD 2FIPA 5IZ2A 3FKIA 2LPIA 3LR6A 4CEIA 1SMYD 2YU9A 3U44A 4CEJA 2B63A 2BE5D 2E2IA 2NVXA 1YNND 2VUMA 2X0PA 2LKMB 2FIOA 3U4QA 2AQLA 1I3QA 2JA5A 1I6VD 2LTHA 1WCMA 4QIWA 3LR8A 2A6ED
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2K3O A;  2K3N A;  2LYI A;  2MQA A; 
#chains in the Genus database with same CATH topology
 2R92 A;  2LPJ A;  4FBS A;  4C5S A;  3H0G A;  3NZ4 A;  1TWA A;  2N3E A;  2R7Z A;  2Y0N A;  4C5U A;  3LR2 A;  2HWG A;  3GTQ A;  1T6J A;  3GTL A;  2F5J A;  3GTM A;  1TWG A;  2E2H A;  1TWF A;  4V2R A;  1SFO A;  1IW7 D;  3GTG A;  2A6H D;  2X0Q A;  3LRD A;  4V2Q A;  2YII A;  1ZYM A;  2LYI A;  4CEH A;  3GTK A;  2O5J D;  3EZB A;  2EZB A;  4C2M A;  3GTO A;  1Y1W A;  2MP0 A;  3GTP A;  2MX9 A;  1HQM D;  2VK9 A;  1EZB A;  2A68 D;  2CW0 D;  3EZE A;  3GTJ A;  1R9T A;  2MQA A;  2R93 A;  1Y2M A;  4BAA A;  2K3N A;  3CQZ A;  2JA6 A;  2A69 D;  2MX8 A;  2K3Q A;  2EZC A;  1T6P A;  2N1D B;  2K3O A;  1Y1V A;  2NVY A;  1W27 A;  1EZA A;  4C5R A;  1I50 A;  1TWH A;  2JA7 A;  2X0O A;  1YNJ D;  1TWC A;  1K83 A;  1ZYR D;  4CQ5 A;  2FIP A;  5IZ2 A;  3FKI A;  2LPI A;  3LR6 A;  4BAB A;  4CEI A;  1SMY D;  2YU9 A;  2HRO A;  3U44 A;  4CEJ A;  2B63 A;  2BE5 D;  2E2I A;  2NVX A;  1YNN D;  2VUM A;  2EZA A;  2X0P A;  2LKM B;  3EZA A;  4C6G A;  2FIO A;  3U4Q A;  2AQL A;  1I3Q A;  2JA5 A;  1I6V D;  2LTH A;  1WCM A;  4QIW A;  3LR8 A;  2A6E D; 
#chains in the Genus database with same CATH homology
 2R92 A;  2LPJ A;  4FBS A;  3H0G A;  1TWA A;  2N3E A;  2R7Z A;  2Y0N A;  3LR2 A;  3GTQ A;  3GTL A;  2F5J A;  3GTM A;  1TWG A;  2E2H A;  1TWF A;  1SFO A;  1IW7 D;  3GTG A;  2A6H D;  2X0Q A;  3LRD A;  2LYI A;  4CEH A;  3GTK A;  2O5J D;  4C2M A;  3GTO A;  1Y1W A;  3GTP A;  2MX9 A;  1HQM D;  2VK9 A;  2A68 D;  2CW0 D;  3GTJ A;  1R9T A;  2MQA A;  2R93 A;  2K3N A;  3CQZ A;  2JA6 A;  2A69 D;  2MX8 A;  2K3Q A;  2N1D B;  2K3O A;  1Y1V A;  2NVY A;  1I50 A;  1TWH A;  2JA7 A;  2X0O A;  1YNJ D;  1TWC A;  1K83 A;  1ZYR D;  2FIP A;  5IZ2 A;  3FKI A;  2LPI A;  3LR6 A;  4CEI A;  1SMY D;  2YU9 A;  3U44 A;  4CEJ A;  2B63 A;  2BE5 D;  2E2I A;  2NVX A;  1YNN D;  2VUM A;  2X0P A;  2LKM B;  2FIO A;  3U4Q A;  2AQL A;  1I3Q A;  2JA5 A;  1I6V D;  2LTH A;  1WCM A;  4QIW A;  3LR8 A;  2A6E D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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