2LPJA

Nmr structure of major ampullate spidroin 1 n-terminal domain at ph 7.2
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
137
structure length
137
Chain Sequence
GSGNSHTTPWTNPGLAENFMNSFMQGLSSMPGFTASQLDDMSTIAQSMVQSIQSLAAQGRTSPNKLQALNMAFASSMAEIAASEEGGGSLSTKTSSIASAMSNAFLQTTGVVNQPFINEITQLVSMFAQAGMNDVSA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords Major ampullate spidroin 1
publication title pH-Dependent Dimerization of Spider Silk N-Terminal Domain Requires Relocation of a Wedged Tryptophan Side Chain.
pubmed doi rcsb
source organism Euprosthenops australis
total genus 46
structure length 137
sequence length 137
ec nomenclature
pdb deposition date 2012-02-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16763 Spidroin_N Major ampullate spidroin 1, spider silk protein 1, N-term
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.70 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Enzyme I; Chain A, domain 2 2lpjA01
5IZ2A 2N3EA 2LPIA 3LR6A 3LRDA 4FBSA 2MX9A 3LR8A 2MX8A 2K3QA 2LTHA 2LPJA 3LR2A
chains in the Genus database with same CATH superfamily
1I50A 3LRDA 2EZCA 2B63A 2EZBA 4QIWA 2R93A 1YNND 1EZAA 3NZ4A 2K3QA 3GTGA 4CEIA 2NVYA 2Y0NA 1T6PA 4C5SA 4CQ5A 1TWAA 3LR2A 2X0PA 2E2IA 2R7ZA 4C5RA 2NVXA 1YNJD 2EZAA 2F5JA 2LTHA 3CQZA 3U4QA 4CEJA 3GTPA 1Y1VA 2YIIA 4C6GA 4C5UA 2BE5D 1TWCA 3EZBA 2FIPA 5IZ2A 2MP0A 2X0QA 3GTMA 2A6ED 2X0OA 2LKMB 1ZYMA 2R92A 2MX8A 1K83A 2K3NA 3EZEA 1IW7D 3GTOA 2MQAA 2HROA 1SFOA 1TWGA 2K3OA 2JA6A 2VK9A 2N3EA 3EZAA 3LR6A 2JA5A 4FBSA 1I3QA 3H0GA 1HQMD 1ZYRD 2E2HA 1Y1WA 3GTJA 2A69D 2MX9A 2CW0D 2AQLA 3GTLA 2YU9A 3U44A 2JA7A 1WCMA 2LPJA 4V2RA 2N1DB 2LPIA 4C2MA 1W27A 3FKIA 4CEHA 3GTQA 1R9TA 2A6HD 1TWHA 4V2QA 1I6VD 2A68D 4BABA 1SMYD 2FIOA 1T6JA 2O5JD 2HWGA 1Y2MA 3GTKA 1TWFA 2LYIA 3LR8A 4BAAA 1EZBA 2VUMA
chains in the Genus database with same CATH topology
1I50A 3LRDA 2B63A 4QIWA 2R93A 1YNND 2K3QA 3GTGA 4CEIA 2NVYA 2Y0NA 1TWAA 3LR2A 2X0PA 2E2IA 2R7ZA 2NVXA 1YNJD 2F5JA 2LTHA 3CQZA 3U4QA 4CEJA 3GTPA 1Y1VA 2BE5D 1TWCA 2FIPA 5IZ2A 2X0QA 3GTMA 2A6ED 2X0OA 2LKMB 2R92A 2MX8A 1K83A 3GTOA 2K3NA 1IW7D 2MQAA 1SFOA 1TWGA 2K3OA 2JA6A 2VK9A 2N3EA 3LR6A 2JA5A 4FBSA 1I3QA 3H0GA 1HQMD 1ZYRD 2E2HA 1Y1WA 3GTJA 2A69D 2MX9A 2CW0D 2AQLA 3GTLA 2YU9A 3U44A 2JA7A 1WCMA 2LPJA 2N1DB 2LPIA 4C2MA 3FKIA 4CEHA 3GTQA 1R9TA 2A6HD 1TWHA 1I6VD 2A68D 1SMYD 2FIOA 2O5JD 3GTKA 1TWFA 2LYIA 3LR8A 2VUMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5IZ2 A;  2N3E A;  2LPI A;  3LR6 A;  3LRD A;  4FBS A;  2MX9 A;  3LR8 A;  2MX8 A;  2K3Q A;  2LTH A;  2LPJ A;  3LR2 A; 
#chains in the Genus database with same CATH topology
 1I50 A;  3LRD A;  2EZC A;  2B63 A;  2EZB A;  4QIW A;  2R93 A;  1YNN D;  1EZA A;  3NZ4 A;  2K3Q A;  3GTG A;  4CEI A;  2NVY A;  2Y0N A;  1T6P A;  4C5S A;  4CQ5 A;  1TWA A;  3LR2 A;  2X0P A;  2E2I A;  2R7Z A;  4C5R A;  2NVX A;  1YNJ D;  2EZA A;  2F5J A;  2LTH A;  3CQZ A;  3U4Q A;  4CEJ A;  3GTP A;  1Y1V A;  2YII A;  4C6G A;  4C5U A;  2BE5 D;  1TWC A;  3EZB A;  2FIP A;  5IZ2 A;  2MP0 A;  2X0Q A;  3GTM A;  2A6E D;  2X0O A;  2LKM B;  1ZYM A;  2R92 A;  2MX8 A;  1K83 A;  2K3N A;  3EZE A;  1IW7 D;  3GTO A;  2MQA A;  2HRO A;  1SFO A;  1TWG A;  2K3O A;  2JA6 A;  2VK9 A;  2N3E A;  3EZA A;  3LR6 A;  2JA5 A;  4FBS A;  1I3Q A;  3H0G A;  1HQM D;  1ZYR D;  2E2H A;  1Y1W A;  3GTJ A;  2A69 D;  2MX9 A;  2CW0 D;  2AQL A;  3GTL A;  2YU9 A;  3U44 A;  2JA7 A;  1WCM A;  2LPJ A;  4V2R A;  2N1D B;  2LPI A;  4C2M A;  1W27 A;  3FKI A;  4CEH A;  3GTQ A;  1R9T A;  2A6H D;  1TWH A;  4V2Q A;  1I6V D;  2A68 D;  4BAB A;  1SMY D;  2FIO A;  1T6J A;  2O5J D;  2HWG A;  1Y2M A;  3GTK A;  1TWF A;  2LYI A;  3LR8 A;  4BAA A;  1EZB A;  2VUM A; 
#chains in the Genus database with same CATH homology
 1I50 A;  3LRD A;  2B63 A;  4QIW A;  2R93 A;  1YNN D;  2K3Q A;  3GTG A;  4CEI A;  2NVY A;  2Y0N A;  1TWA A;  3LR2 A;  2X0P A;  2E2I A;  2R7Z A;  2NVX A;  1YNJ D;  2F5J A;  2LTH A;  3CQZ A;  3U4Q A;  4CEJ A;  3GTP A;  1Y1V A;  2BE5 D;  1TWC A;  2FIP A;  5IZ2 A;  2X0Q A;  3GTM A;  2A6E D;  2X0O A;  2LKM B;  2R92 A;  2MX8 A;  1K83 A;  3GTO A;  2K3N A;  1IW7 D;  2MQA A;  1SFO A;  1TWG A;  2K3O A;  2JA6 A;  2VK9 A;  2N3E A;  3LR6 A;  2JA5 A;  4FBS A;  1I3Q A;  3H0G A;  1HQM D;  1ZYR D;  2E2H A;  1Y1W A;  3GTJ A;  2A69 D;  2MX9 A;  2CW0 D;  2AQL A;  3GTL A;  2YU9 A;  3U44 A;  2JA7 A;  1WCM A;  2LPJ A;  2N1D B;  2LPI A;  4C2M A;  3FKI A;  4CEH A;  3GTQ A;  1R9T A;  2A6H D;  1TWH A;  1I6V D;  2A68 D;  1SMY D;  2FIO A;  2O5J D;  3GTK A;  1TWF A;  2LYI A;  3LR8 A;  2VUM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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