2N3EA

Amino-terminal domain of latrodectus hesperus masp1 with neutralized acidic cluster
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
137
structure length
137
Chain Sequence
GMGQANTPWSSKANADAFINSFISAASNTGSFSQDQMENMSLIGNTLMAAMDNMGGRITPSKLQALDMAFASSVAQIAASQGGDLGVTTNAIADALTSAFYQTTGVVNSRFISEIRSLIGMFAQASANDVYASAGSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Major ampullate spidroin 1
publication title High resolution structure of an engineered amino-terminal ampullate spider silk with neutralized charge cluster
rcsb
source organism Latrodectus hesperus
molecule tags Structural protein
total genus 42
structure length 137
sequence length 137
ec nomenclature
pdb deposition date 2015-05-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16763 Spidroin_N Major ampullate spidroin 1, spider silk protein 1, N-term
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.70 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Enzyme I; Chain A, domain 2 2n3eA01
2MX9A 2LTHA 2K3QA 2N3EA 2LPJA 2LPIA 3LR8A 3LRDA 5IZ2A 2MX8A 3LR2A 3LR6A 4FBSA
chains in the Genus database with same CATH superfamily
3NZ4A 2K3QA 3GTOA 3EZEA 3GTGA 2HROA 2K3OA 1I6VD 1T6JA 2CW0D 3U44A 1Y1WA 2A6ED 2N3EA 2LYIA 3GTJA 4C5SA 2K3NA 2JA5A 2A6HD 4C5RA 2Y0NA 2AQLA 2BE5D 2EZBA 4C5UA 3U4QA 1YNND 1Y1VA 2YIIA 3GTQA 2F5JA 3H0GA 2LPIA 3CQZA 5IZ2A 2MX8A 4QIWA 2X0OA 3GTMA 2HWGA 1R9TA 2YU9A 2VUMA 4C6GA 2R7ZA 1ZYRD 2B63A 2MQAA 4CEHA 1K83A 1TWAA 2NVYA 1I3QA 4C2MA 2MX9A 2NVXA 1ZYMA 4CQ5A 3EZBA 1HQMD 1T6PA 2FIPA 4BABA 4V2RA 1WCMA 2R93A 2JA7A 2R92A 4CEJA 2FIOA 2LTHA 2LKMB 4FBSA 2EZAA 1IW7D 4V2QA 3GTPA 1I50A 2O5JD 2MP0A 2JA6A 3GTLA 1TWCA 2E2HA 3FKIA 2E2IA 1SMYD 1W27A 2EZCA 1TWHA 2VK9A 2X0QA 2X0PA 2A69D 4CEIA 1EZAA 1YNJD 1Y2MA 1TWGA 3EZAA 2LPJA 2N1DB 3LR2A 3LR8A 3GTKA 2A68D 1SFOA 4BAAA 1TWFA 1EZBA 3LRDA 3LR6A
chains in the Genus database with same CATH topology
2K3QA 3GTOA 3GTGA 2K3OA 1I6VD 2CW0D 3U44A 1Y1WA 2A6ED 2N3EA 2LYIA 3GTJA 2K3NA 2JA5A 2A6HD 2Y0NA 2AQLA 2BE5D 3U4QA 1YNND 1Y1VA 3GTQA 2F5JA 3H0GA 2LPIA 3CQZA 5IZ2A 2MX8A 4QIWA 2X0OA 3GTMA 1R9TA 2YU9A 2VUMA 2R7ZA 1ZYRD 2B63A 2MQAA 4CEHA 1K83A 1TWAA 2NVYA 1I3QA 4C2MA 2MX9A 2NVXA 1HQMD 2FIPA 1WCMA 2R93A 2JA7A 2R92A 4CEJA 2FIOA 2LTHA 2LKMB 4FBSA 1IW7D 3GTPA 1I50A 2O5JD 2JA6A 3GTLA 1TWCA 2E2HA 3FKIA 2E2IA 1SMYD 1TWHA 2VK9A 2X0QA 2X0PA 2A69D 4CEIA 1YNJD 1TWGA 2LPJA 2N1DB 3LR2A 3LR8A 3GTKA 2A68D 1SFOA 1TWFA 3LRDA 3LR6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2MX9 A;  2LTH A;  2K3Q A;  2N3E A;  2LPJ A;  2LPI A;  3LR8 A;  3LRD A;  5IZ2 A;  2MX8 A;  3LR2 A;  3LR6 A;  4FBS A; 
#chains in the Genus database with same CATH topology
 3NZ4 A;  2K3Q A;  3GTO A;  3EZE A;  3GTG A;  2HRO A;  2K3O A;  1I6V D;  1T6J A;  2CW0 D;  3U44 A;  1Y1W A;  2A6E D;  2N3E A;  2LYI A;  3GTJ A;  4C5S A;  2K3N A;  2JA5 A;  2A6H D;  4C5R A;  2Y0N A;  2AQL A;  2BE5 D;  2EZB A;  4C5U A;  3U4Q A;  1YNN D;  1Y1V A;  2YII A;  3GTQ A;  2F5J A;  3H0G A;  2LPI A;  3CQZ A;  5IZ2 A;  2MX8 A;  4QIW A;  2X0O A;  3GTM A;  2HWG A;  1R9T A;  2YU9 A;  2VUM A;  4C6G A;  2R7Z A;  1ZYR D;  2B63 A;  2MQA A;  4CEH A;  1K83 A;  1TWA A;  2NVY A;  1I3Q A;  4C2M A;  2MX9 A;  2NVX A;  1ZYM A;  4CQ5 A;  3EZB A;  1HQM D;  1T6P A;  2FIP A;  4BAB A;  4V2R A;  1WCM A;  2R93 A;  2JA7 A;  2R92 A;  4CEJ A;  2FIO A;  2LTH A;  2LKM B;  4FBS A;  2EZA A;  1IW7 D;  4V2Q A;  3GTP A;  1I50 A;  2O5J D;  2MP0 A;  2JA6 A;  3GTL A;  1TWC A;  2E2H A;  3FKI A;  2E2I A;  1SMY D;  1W27 A;  2EZC A;  1TWH A;  2VK9 A;  2X0Q A;  2X0P A;  2A69 D;  4CEI A;  1EZA A;  1YNJ D;  1Y2M A;  1TWG A;  3EZA A;  2LPJ A;  2N1D B;  3LR2 A;  3LR8 A;  3GTK A;  2A68 D;  1SFO A;  4BAA A;  1TWF A;  1EZB A;  3LRD A;  3LR6 A; 
#chains in the Genus database with same CATH homology
 2K3Q A;  3GTO A;  3GTG A;  2K3O A;  1I6V D;  2CW0 D;  3U44 A;  1Y1W A;  2A6E D;  2N3E A;  2LYI A;  3GTJ A;  2K3N A;  2JA5 A;  2A6H D;  2Y0N A;  2AQL A;  2BE5 D;  3U4Q A;  1YNN D;  1Y1V A;  3GTQ A;  2F5J A;  3H0G A;  2LPI A;  3CQZ A;  5IZ2 A;  2MX8 A;  4QIW A;  2X0O A;  3GTM A;  1R9T A;  2YU9 A;  2VUM A;  2R7Z A;  1ZYR D;  2B63 A;  2MQA A;  4CEH A;  1K83 A;  1TWA A;  2NVY A;  1I3Q A;  4C2M A;  2MX9 A;  2NVX A;  1HQM D;  2FIP A;  1WCM A;  2R93 A;  2JA7 A;  2R92 A;  4CEJ A;  2FIO A;  2LTH A;  2LKM B;  4FBS A;  1IW7 D;  3GTP A;  1I50 A;  2O5J D;  2JA6 A;  3GTL A;  1TWC A;  2E2H A;  3FKI A;  2E2I A;  1SMY D;  1TWH A;  2VK9 A;  2X0Q A;  2X0P A;  2A69 D;  4CEI A;  1YNJ D;  1TWG A;  2LPJ A;  2N1D B;  3LR2 A;  3LR8 A;  3GTK A;  2A68 D;  1SFO A;  1TWF A;  3LRD A;  3LR6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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