2N3EA

Amino-terminal domain of latrodectus hesperus masp1 with neutralized acidic cluster
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
137
structure length
137
Chain Sequence
b'GMGQANTPWSSKANADAFINSFISAASNTGSFSQDQMENMSLIGNTLMAAMDNMGGRITPSKLQALDMAFASSVAQIAASQGGDLGVTTNAIADALTSAFYQTTGVVNSRFISEIRSLIGMFAQASANDVYASAGSG'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Major ampullate spidroin 1
publication title High resolution structure of an engineered amino-terminal ampullate spider silk with neutralized charge cluster
rcsb
source organism Latrodectus hesperus
molecule tags Structural protein
total genus 42
structure length 137
sequence length 137
ec nomenclature
pdb deposition date 2015-05-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16763 Spidroin_N Major ampullate spidroin 1, spider silk protein 1, N-term
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.70 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Enzyme I; Chain A, domain 2 2n3eA01
2N3EA 5IZ2A 2LPJA 3LR2A 4FBSA 3LRDA 3LR8A 2MX9A 2LTHA 2K3QA 3LR6A 2LPIA 2MX8A
chains in the Genus database with same CATH superfamily
1K83A 4QIWA 2A6HD 3LR2A 1TWGA 3GTKA 2JA6A 1SFOA 4C6GA 1TWHA 1WCMA 2K3QA 4C5SA 2N1DB 1EZBA 1YNJD 2R92A 4C5RA 1I6VD 2LPJA 2O5JD 2YU9A 2AQLA 2EZBA 3GTJA 2Y0NA 1T6JA 3H0GA 1Y2MA 4CEHA 3CQZA 2JA7A 2VK9A 2A6ED 2NVYA 2LTHA 1TWCA 2LKMB 1YNND 4FBSA 4BABA 4C2MA 2E2IA 1I50A 3GTQA 2EZAA 2MX8A 2X0PA 2A68D 3GTGA 2X0OA 3LR6A 4C5UA 2MP0A 1ZYMA 1W27A 1R9TA 2HWGA 2A69D 1SMYD 1Y1WA 3FKIA 2NVXA 2FIOA 2F5JA 1HQMD 2B63A 2MX9A 1I3QA 3NZ4A 1IW7D 2R7ZA 1ZYRD 2HROA 3GTMA 4CEJA 1EZAA 3EZAA 3U44A 4CQ5A 2K3NA 1TWAA 2YIIA 2EZCA 2CW0D 3GTPA 2LYIA 1T6PA 3LRDA 3U4QA 1TWFA 3GTLA 2N3EA 5IZ2A 4V2RA 4BAAA 3GTOA 2E2HA 2JA5A 2MQAA 4V2QA 3EZBA 2LPIA 2R93A 1Y1VA 2K3OA 2VUMA 3EZEA 3LR8A 2BE5D 2FIPA 4CEIA 2X0QA
chains in the Genus database with same CATH topology
1K83A 4QIWA 2A6HD 3LR2A 1TWGA 3GTKA 2JA6A 1SFOA 1TWHA 1WCMA 2K3QA 2N1DB 1YNJD 2R92A 1I6VD 2LPJA 2O5JD 2YU9A 2AQLA 3GTJA 2Y0NA 3H0GA 4CEHA 3CQZA 2JA7A 2VK9A 2A6ED 2NVYA 2LTHA 1TWCA 2LKMB 1YNND 4FBSA 4C2MA 2E2IA 1I50A 3GTQA 2MX8A 2X0PA 2A68D 3GTGA 2X0OA 3LR6A 1R9TA 2A69D 1SMYD 1Y1WA 3FKIA 2NVXA 2FIOA 2F5JA 1HQMD 2B63A 2MX9A 1I3QA 1IW7D 2R7ZA 1ZYRD 3GTMA 4CEJA 3U44A 2K3NA 1TWAA 2CW0D 3GTPA 2LYIA 3LRDA 3U4QA 1TWFA 3GTLA 2N3EA 5IZ2A 3GTOA 2E2HA 2JA5A 2MQAA 2LPIA 2R93A 1Y1VA 2K3OA 2VUMA 3LR8A 2BE5D 2FIPA 4CEIA 2X0QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2N3E A;  5IZ2 A;  2LPJ A;  3LR2 A;  4FBS A;  3LRD A;  3LR8 A;  2MX9 A;  2LTH A;  2K3Q A;  3LR6 A;  2LPI A;  2MX8 A; 
#chains in the Genus database with same CATH topology
 1K83 A;  4QIW A;  2A6H D;  3LR2 A;  1TWG A;  3GTK A;  2JA6 A;  1SFO A;  4C6G A;  1TWH A;  1WCM A;  2K3Q A;  4C5S A;  2N1D B;  1EZB A;  1YNJ D;  2R92 A;  4C5R A;  1I6V D;  2LPJ A;  2O5J D;  2YU9 A;  2AQL A;  2EZB A;  3GTJ A;  2Y0N A;  1T6J A;  3H0G A;  1Y2M A;  4CEH A;  3CQZ A;  2JA7 A;  2VK9 A;  2A6E D;  2NVY A;  2LTH A;  1TWC A;  2LKM B;  1YNN D;  4FBS A;  4BAB A;  4C2M A;  2E2I A;  1I50 A;  3GTQ A;  2EZA A;  2MX8 A;  2X0P A;  2A68 D;  3GTG A;  2X0O A;  3LR6 A;  4C5U A;  2MP0 A;  1ZYM A;  1W27 A;  1R9T A;  2HWG A;  2A69 D;  1SMY D;  1Y1W A;  3FKI A;  2NVX A;  2FIO A;  2F5J A;  1HQM D;  2B63 A;  2MX9 A;  1I3Q A;  3NZ4 A;  1IW7 D;  2R7Z A;  1ZYR D;  2HRO A;  3GTM A;  4CEJ A;  1EZA A;  3EZA A;  3U44 A;  4CQ5 A;  2K3N A;  1TWA A;  2YII A;  2EZC A;  2CW0 D;  3GTP A;  2LYI A;  1T6P A;  3LRD A;  3U4Q A;  1TWF A;  3GTL A;  2N3E A;  5IZ2 A;  4V2R A;  4BAA A;  3GTO A;  2E2H A;  2JA5 A;  2MQA A;  4V2Q A;  3EZB A;  2LPI A;  2R93 A;  1Y1V A;  2K3O A;  2VUM A;  3EZE A;  3LR8 A;  2BE5 D;  2FIP A;  4CEI A;  2X0Q A; 
#chains in the Genus database with same CATH homology
 1K83 A;  4QIW A;  2A6H D;  3LR2 A;  1TWG A;  3GTK A;  2JA6 A;  1SFO A;  1TWH A;  1WCM A;  2K3Q A;  2N1D B;  1YNJ D;  2R92 A;  1I6V D;  2LPJ A;  2O5J D;  2YU9 A;  2AQL A;  3GTJ A;  2Y0N A;  3H0G A;  4CEH A;  3CQZ A;  2JA7 A;  2VK9 A;  2A6E D;  2NVY A;  2LTH A;  1TWC A;  2LKM B;  1YNN D;  4FBS A;  4C2M A;  2E2I A;  1I50 A;  3GTQ A;  2MX8 A;  2X0P A;  2A68 D;  3GTG A;  2X0O A;  3LR6 A;  1R9T A;  2A69 D;  1SMY D;  1Y1W A;  3FKI A;  2NVX A;  2FIO A;  2F5J A;  1HQM D;  2B63 A;  2MX9 A;  1I3Q A;  1IW7 D;  2R7Z A;  1ZYR D;  3GTM A;  4CEJ A;  3U44 A;  2K3N A;  1TWA A;  2CW0 D;  3GTP A;  2LYI A;  3LRD A;  3U4Q A;  1TWF A;  3GTL A;  2N3E A;  5IZ2 A;  3GTO A;  2E2H A;  2JA5 A;  2MQA A;  2LPI A;  2R93 A;  1Y1V A;  2K3O A;  2VUM A;  3LR8 A;  2BE5 D;  2FIP A;  4CEI A;  2X0Q A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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