2N3EA

Amino-terminal domain of latrodectus hesperus masp1 with neutralized acidic cluster
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
137
structure length
137
Chain Sequence
b'GMGQANTPWSSKANADAFINSFISAASNTGSFSQDQMENMSLIGNTLMAAMDNMGGRITPSKLQALDMAFASSVAQIAASQGGDLGVTTNAIADALTSAFYQTTGVVNSRFISEIRSLIGMFAQASANDVYASAGSG'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Major ampullate spidroin 1
publication title High resolution structure of an engineered amino-terminal ampullate spider silk with neutralized charge cluster
rcsb
source organism Latrodectus hesperus
molecule tags Structural protein
total genus 42
structure length 137
sequence length 137
ec nomenclature
pdb deposition date 2015-05-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16763 Spidroin_N Major ampullate spidroin 1, spider silk protein 1, N-term
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.70 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Enzyme I; Chain A, domain 2 2n3eA01
2LTHA 3LR8A 4FBSA 5IZ2A 2N3EA 3LRDA 2MX8A 2LPJA 2MX9A 2K3QA 3LR6A 3LR2A 2LPIA
chains in the Genus database with same CATH superfamily
1T6PA 4BAAA 2E2HA 1YNJD 2A6ED 1I50A 2HWGA 3LR2A 1Y2MA 1K83A 2X0PA 2VUMA 2BE5D 3GTQA 3GTJA 2EZAA 3LR6A 1Y1WA 2EZCA 3LR8A 2A69D 3H0GA 2O5JD 2Y0NA 2JA6A 3U44A 2LKMB 2R7ZA 2B63A 3EZBA 1SFOA 3GTGA 3NZ4A 4C6GA 2YU9A 2K3OA 1ZYRD 2AQLA 2A6HD 3GTPA 1TWAA 4CQ5A 2LYIA 4V2QA 4C5UA 2E2IA 2F5JA 1TWCA 4QIWA 2X0OA 5IZ2A 1HQMD 2X0QA 1IW7D 1EZAA 3GTLA 2N3EA 2A68D 4V2RA 2EZBA 2CW0D 1TWFA 2JA7A 4CEHA 4C5RA 1TWGA 1SMYD 1ZYMA 2VK9A 2R92A 1I6VD 2HROA 1WCMA 1TWHA 2NVXA 3LRDA 1T6JA 2FIOA 3FKIA 3GTOA 1Y1VA 2FIPA 1I3QA 1W27A 4CEJA 2MX8A 2K3QA 1YNND 2K3NA 3EZAA 1EZBA 3CQZA 2R93A 2LTHA 3EZEA 4C5SA 3GTKA 2YIIA 2MQAA 2JA5A 4CEIA 2NVYA 2LPJA 2MX9A 1R9TA 4C2MA 2MP0A 2LPIA 4BABA 3U4QA 3GTMA 4FBSA 2N1DB
chains in the Genus database with same CATH topology
2E2HA 1YNJD 2A6ED 1I50A 3LR2A 1K83A 2X0PA 2VUMA 2BE5D 3GTQA 3GTJA 3LR6A 1Y1WA 3LR8A 2A69D 3H0GA 2O5JD 2Y0NA 2JA6A 3U44A 2LKMB 2R7ZA 2B63A 1SFOA 3GTGA 2YU9A 2K3OA 1ZYRD 2AQLA 2A6HD 3GTPA 1TWAA 2LYIA 2E2IA 2F5JA 1TWCA 4QIWA 2X0OA 5IZ2A 1HQMD 2X0QA 1IW7D 3GTLA 2N3EA 2A68D 2CW0D 1TWFA 2JA7A 4CEHA 1TWGA 1SMYD 2VK9A 2R92A 1I6VD 1WCMA 1TWHA 2NVXA 3LRDA 2FIOA 3FKIA 3GTOA 1Y1VA 2FIPA 1I3QA 4CEJA 2MX8A 2K3QA 1YNND 2K3NA 3CQZA 2R93A 2LTHA 3GTKA 2MQAA 2JA5A 4CEIA 2NVYA 2LPJA 2MX9A 1R9TA 4C2MA 2LPIA 3U4QA 3GTMA 4FBSA 2N1DB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LTH A;  3LR8 A;  4FBS A;  5IZ2 A;  2N3E A;  3LRD A;  2MX8 A;  2LPJ A;  2MX9 A;  2K3Q A;  3LR6 A;  3LR2 A;  2LPI A; 
#chains in the Genus database with same CATH topology
 1T6P A;  4BAA A;  2E2H A;  1YNJ D;  2A6E D;  1I50 A;  2HWG A;  3LR2 A;  1Y2M A;  1K83 A;  2X0P A;  2VUM A;  2BE5 D;  3GTQ A;  3GTJ A;  2EZA A;  3LR6 A;  1Y1W A;  2EZC A;  3LR8 A;  2A69 D;  3H0G A;  2O5J D;  2Y0N A;  2JA6 A;  3U44 A;  2LKM B;  2R7Z A;  2B63 A;  3EZB A;  1SFO A;  3GTG A;  3NZ4 A;  4C6G A;  2YU9 A;  2K3O A;  1ZYR D;  2AQL A;  2A6H D;  3GTP A;  1TWA A;  4CQ5 A;  2LYI A;  4V2Q A;  4C5U A;  2E2I A;  2F5J A;  1TWC A;  4QIW A;  2X0O A;  5IZ2 A;  1HQM D;  2X0Q A;  1IW7 D;  1EZA A;  3GTL A;  2N3E A;  2A68 D;  4V2R A;  2EZB A;  2CW0 D;  1TWF A;  2JA7 A;  4CEH A;  4C5R A;  1TWG A;  1SMY D;  1ZYM A;  2VK9 A;  2R92 A;  1I6V D;  2HRO A;  1WCM A;  1TWH A;  2NVX A;  3LRD A;  1T6J A;  2FIO A;  3FKI A;  3GTO A;  1Y1V A;  2FIP A;  1I3Q A;  1W27 A;  4CEJ A;  2MX8 A;  2K3Q A;  1YNN D;  2K3N A;  3EZA A;  1EZB A;  3CQZ A;  2R93 A;  2LTH A;  3EZE A;  4C5S A;  3GTK A;  2YII A;  2MQA A;  2JA5 A;  4CEI A;  2NVY A;  2LPJ A;  2MX9 A;  1R9T A;  4C2M A;  2MP0 A;  2LPI A;  4BAB A;  3U4Q A;  3GTM A;  4FBS A;  2N1D B; 
#chains in the Genus database with same CATH homology
 2E2H A;  1YNJ D;  2A6E D;  1I50 A;  3LR2 A;  1K83 A;  2X0P A;  2VUM A;  2BE5 D;  3GTQ A;  3GTJ A;  3LR6 A;  1Y1W A;  3LR8 A;  2A69 D;  3H0G A;  2O5J D;  2Y0N A;  2JA6 A;  3U44 A;  2LKM B;  2R7Z A;  2B63 A;  1SFO A;  3GTG A;  2YU9 A;  2K3O A;  1ZYR D;  2AQL A;  2A6H D;  3GTP A;  1TWA A;  2LYI A;  2E2I A;  2F5J A;  1TWC A;  4QIW A;  2X0O A;  5IZ2 A;  1HQM D;  2X0Q A;  1IW7 D;  3GTL A;  2N3E A;  2A68 D;  2CW0 D;  1TWF A;  2JA7 A;  4CEH A;  1TWG A;  1SMY D;  2VK9 A;  2R92 A;  1I6V D;  1WCM A;  1TWH A;  2NVX A;  3LRD A;  2FIO A;  3FKI A;  3GTO A;  1Y1V A;  2FIP A;  1I3Q A;  4CEJ A;  2MX8 A;  2K3Q A;  1YNN D;  2K3N A;  3CQZ A;  2R93 A;  2LTH A;  3GTK A;  2MQA A;  2JA5 A;  4CEI A;  2NVY A;  2LPJ A;  2MX9 A;  1R9T A;  4C2M A;  2LPI A;  3U4Q A;  3GTM A;  4FBS A;  2N1D B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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