2N3EA

Amino-terminal domain of latrodectus hesperus masp1 with neutralized acidic cluster
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
137
structure length
137
Chain Sequence
GMGQANTPWSSKANADAFINSFISAASNTGSFSQDQMENMSLIGNTLMAAMDNMGGRITPSKLQALDMAFASSVAQIAASQGGDLGVTTNAIADALTSAFYQTTGVVNSRFISEIRSLIGMFAQASANDVYASAGSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords Major ampullate spidroin 1
publication title High resolution structure of an engineered amino-terminal ampullate spider silk with neutralized charge cluster
rcsb
source organism Latrodectus hesperus
total genus 42
structure length 137
sequence length 137
ec nomenclature
pdb deposition date 2015-05-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16763 Spidroin_N Major ampullate spidroin 1, spider silk protein 1, N-term
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.70 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Enzyme I; Chain A, domain 2 2n3eA01
2K3QA 3LR6A 2N3EA 3LRDA 2LPJA 2LPIA 3LR2A 5IZ2A 2LTHA 2MX9A 4FBSA 3LR8A 2MX8A
chains in the Genus database with same CATH superfamily
2A6ED 2E2IA 1I3QA 4V2QA 4C5UA 1K83A 2NVXA 3U4QA 3NZ4A 2R93A 5IZ2A 1EZBA 4CQ5A 2JA5A 3GTQA 1T6JA 3LR8A 3LR2A 1W27A 2N1DB 2A69D 1Y1VA 4QIWA 2YIIA 3GTPA 4FBSA 3GTKA 2E2HA 1WCMA 2BE5D 2A68D 2X0OA 2VUMA 2B63A 2JA6A 2LKMB 1TWHA 2EZCA 2HWGA 2K3NA 1TWFA 2LTHA 3EZBA 2MX8A 1HQMD 1ZYMA 3LRDA 1Y2MA 4CEIA 1TWAA 1YNND 3GTMA 1TWGA 2MX9A 1I50A 2A6HD 4C5SA 2K3OA 4C2MA 2AQLA 2X0QA 3EZAA 2EZBA 2YU9A 4C5RA 2R92A 1Y1WA 2LYIA 3EZEA 2R7ZA 1SFOA 2LPIA 3FKIA 3GTLA 2CW0D 2FIPA 4CEHA 1EZAA 2EZAA 2K3QA 3LR6A 4BAAA 1SMYD 4BABA 1IW7D 2LPJA 2O5JD 3CQZA 3GTOA 3U44A 3GTJA 3GTGA 1ZYRD 1T6PA 1YNJD 2F5JA 2VK9A 3H0GA 2Y0NA 2MP0A 4C6GA 2MQAA 1I6VD 2NVYA 2X0PA 4V2RA 1R9TA 1TWCA 2N3EA 2JA7A 2FIOA 4CEJA 2HROA
chains in the Genus database with same CATH topology
2A6ED 2E2IA 1I3QA 1K83A 2NVXA 3U4QA 2R93A 5IZ2A 2JA5A 3GTQA 3LR8A 3LR2A 2N1DB 2A69D 1Y1VA 4QIWA 3GTPA 4FBSA 3GTKA 2E2HA 1WCMA 2BE5D 2A68D 2X0OA 2VUMA 2B63A 2JA6A 2LKMB 1TWHA 2K3NA 1TWFA 2LTHA 2MX8A 1HQMD 3LRDA 4CEIA 1TWAA 1YNND 3GTMA 1TWGA 2MX9A 1I50A 2A6HD 2K3OA 4C2MA 2AQLA 2X0QA 2YU9A 1Y1WA 2R92A 2LYIA 2R7ZA 1SFOA 2LPIA 3FKIA 3GTLA 2CW0D 2FIPA 4CEHA 2K3QA 3LR6A 1SMYD 1IW7D 2LPJA 2O5JD 3CQZA 3GTOA 3U44A 3GTJA 3GTGA 1ZYRD 1YNJD 2F5JA 2VK9A 3H0GA 2Y0NA 2MQAA 1I6VD 2NVYA 2X0PA 1R9TA 1TWCA 2N3EA 2JA7A 2FIOA 4CEJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2K3Q A;  3LR6 A;  2N3E A;  3LRD A;  2LPJ A;  2LPI A;  3LR2 A;  5IZ2 A;  2LTH A;  2MX9 A;  4FBS A;  3LR8 A;  2MX8 A; 
#chains in the Genus database with same CATH topology
 2A6E D;  2E2I A;  1I3Q A;  4V2Q A;  4C5U A;  1K83 A;  2NVX A;  3U4Q A;  3NZ4 A;  2R93 A;  5IZ2 A;  1EZB A;  4CQ5 A;  2JA5 A;  3GTQ A;  1T6J A;  3LR8 A;  3LR2 A;  1W27 A;  2N1D B;  2A69 D;  1Y1V A;  4QIW A;  2YII A;  3GTP A;  4FBS A;  3GTK A;  2E2H A;  1WCM A;  2BE5 D;  2A68 D;  2X0O A;  2VUM A;  2B63 A;  2JA6 A;  2LKM B;  1TWH A;  2EZC A;  2HWG A;  2K3N A;  1TWF A;  2LTH A;  3EZB A;  2MX8 A;  1HQM D;  1ZYM A;  3LRD A;  1Y2M A;  4CEI A;  1TWA A;  1YNN D;  3GTM A;  1TWG A;  2MX9 A;  1I50 A;  2A6H D;  4C5S A;  2K3O A;  4C2M A;  2AQL A;  2X0Q A;  3EZA A;  2EZB A;  2YU9 A;  4C5R A;  2R92 A;  1Y1W A;  2LYI A;  3EZE A;  2R7Z A;  1SFO A;  2LPI A;  3FKI A;  3GTL A;  2CW0 D;  2FIP A;  4CEH A;  1EZA A;  2EZA A;  2K3Q A;  3LR6 A;  4BAA A;  1SMY D;  4BAB A;  1IW7 D;  2LPJ A;  2O5J D;  3CQZ A;  3GTO A;  3U44 A;  3GTJ A;  3GTG A;  1ZYR D;  1T6P A;  1YNJ D;  2F5J A;  2VK9 A;  3H0G A;  2Y0N A;  2MP0 A;  4C6G A;  2MQA A;  1I6V D;  2NVY A;  2X0P A;  4V2R A;  1R9T A;  1TWC A;  2N3E A;  2JA7 A;  2FIO A;  4CEJ A;  2HRO A; 
#chains in the Genus database with same CATH homology
 2A6E D;  2E2I A;  1I3Q A;  1K83 A;  2NVX A;  3U4Q A;  2R93 A;  5IZ2 A;  2JA5 A;  3GTQ A;  3LR8 A;  3LR2 A;  2N1D B;  2A69 D;  1Y1V A;  4QIW A;  3GTP A;  4FBS A;  3GTK A;  2E2H A;  1WCM A;  2BE5 D;  2A68 D;  2X0O A;  2VUM A;  2B63 A;  2JA6 A;  2LKM B;  1TWH A;  2K3N A;  1TWF A;  2LTH A;  2MX8 A;  1HQM D;  3LRD A;  4CEI A;  1TWA A;  1YNN D;  3GTM A;  1TWG A;  2MX9 A;  1I50 A;  2A6H D;  2K3O A;  4C2M A;  2AQL A;  2X0Q A;  2YU9 A;  1Y1W A;  2R92 A;  2LYI A;  2R7Z A;  1SFO A;  2LPI A;  3FKI A;  3GTL A;  2CW0 D;  2FIP A;  4CEH A;  2K3Q A;  3LR6 A;  1SMY D;  1IW7 D;  2LPJ A;  2O5J D;  3CQZ A;  3GTO A;  3U44 A;  3GTJ A;  3GTG A;  1ZYR D;  1YNJ D;  2F5J A;  2VK9 A;  3H0G A;  2Y0N A;  2MQA A;  1I6V D;  2NVY A;  2X0P A;  1R9T A;  1TWC A;  2N3E A;  2JA7 A;  2FIO A;  4CEJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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