2N3EA

Amino-terminal domain of latrodectus hesperus masp1 with neutralized acidic cluster
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
137
structure length
137
Chain Sequence
GMGQANTPWSSKANADAFINSFISAASNTGSFSQDQMENMSLIGNTLMAAMDNMGGRITPSKLQALDMAFASSVAQIAASQGGDLGVTTNAIADALTSAFYQTTGVVNSRFISEIRSLIGMFAQASANDVYASAGSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title High resolution structure of an engineered amino-terminal ampullate spider silk with neutralized charge cluster
rcsb
source organism Latrodectus hesperus
molecule tags Structural protein
molecule keywords Major ampullate spidroin 1
total genus 42
structure length 137
sequence length 137
ec nomenclature
pdb deposition date 2015-05-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16763 Spidroin_N Major ampullate spidroin 1, spider silk protein 1, N-term
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.70 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Enzyme I; Chain A, domain 2 2n3eA01
3LR6A 2K3QA 3LRDA 4FBSA 3LR2A 2MX9A 3LR8A 2LPJA 5IZ2A 2MX8A 2N3EA 2LTHA 2LPIA
chains in the Genus database with same CATH superfamily
3LRDA 2A6HD 3LR8A 3GTKA 2A69D 2E2HA 3U4QA 2Y0NA 3FKIA 3NZ4A 2BE5D 1TWFA 2YIIA 4CQ5A 4C2MA 3GTQA 2K3NA 3U44A 3GTJA 1ZYMA 1WCMA 1TWAA 2HROA 1Y2MA 2EZAA 1HQMD 3EZAA 2R93A 2AQLA 2N3EA 2X0QA 2NVXA 4CEHA 3LR6A 2B63A 2LTHA 2JA5A 2LYIA 4BAAA 2A68D 4QIWA 2HWGA 2O5JD 3H0GA 2N1DB 4C6GA 2LKMB 4CEIA 2F5JA 3GTPA 5IZ2A 2MX8A 2R92A 3GTGA 1EZAA 1TWGA 4V2RA 2A6ED 2MX9A 2X0OA 1W27A 1T6PA 3EZEA 4FBSA 4V2QA 1TWHA 2X0PA 4C5SA 3CQZA 4BABA 2YU9A 2FIOA 2MQAA 1SFOA 1Y1WA 2R7ZA 2JA6A 1I3QA 4CEJA 1TWCA 4C5UA 1YNJD 2LPJA 4C5RA 1Y1VA 2E2IA 1R9TA 2VUMA 1I6VD 2FIPA 2K3OA 2EZCA 1I50A 2LPIA 2NVYA 1IW7D 3GTLA 3GTMA 2K3QA 3LR2A 2VK9A 2EZBA 1SMYD 1K83A 1YNND 2JA7A 3EZBA 2CW0D 1T6JA 3GTOA 1EZBA 1ZYRD 2MP0A
chains in the Genus database with same CATH topology
3LRDA 2A6HD 3LR8A 3GTKA 2A69D 2E2HA 3U4QA 2Y0NA 3FKIA 2BE5D 1TWFA 4C2MA 3GTQA 2K3NA 3U44A 3GTJA 1WCMA 1TWAA 1HQMD 2R93A 2AQLA 2N3EA 2X0QA 2NVXA 4CEHA 3LR6A 2B63A 2LTHA 2JA5A 2LYIA 2A68D 4QIWA 2O5JD 3H0GA 2N1DB 2LKMB 4CEIA 2F5JA 3GTPA 5IZ2A 2MX8A 2R92A 3GTGA 1TWGA 2A6ED 2MX9A 2X0OA 4FBSA 1TWHA 2X0PA 3CQZA 2YU9A 2FIOA 2MQAA 1SFOA 1Y1WA 2R7ZA 2JA6A 1I3QA 4CEJA 1TWCA 1YNJD 2LPJA 1Y1VA 2E2IA 1R9TA 2VUMA 1I6VD 2FIPA 2K3OA 1I50A 2LPIA 2NVYA 1IW7D 3GTLA 3GTMA 2K3QA 3LR2A 2VK9A 1SMYD 1K83A 1YNND 2JA7A 2CW0D 3GTOA 1ZYRD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LR6 A;  2K3Q A;  3LRD A;  4FBS A;  3LR2 A;  2MX9 A;  3LR8 A;  2LPJ A;  5IZ2 A;  2MX8 A;  2N3E A;  2LTH A;  2LPI A; 
#chains in the Genus database with same CATH topology
 3LRD A;  2A6H D;  3LR8 A;  3GTK A;  2A69 D;  2E2H A;  3U4Q A;  2Y0N A;  3FKI A;  3NZ4 A;  2BE5 D;  1TWF A;  2YII A;  4CQ5 A;  4C2M A;  3GTQ A;  2K3N A;  3U44 A;  3GTJ A;  1ZYM A;  1WCM A;  1TWA A;  2HRO A;  1Y2M A;  2EZA A;  1HQM D;  3EZA A;  2R93 A;  2AQL A;  2N3E A;  2X0Q A;  2NVX A;  4CEH A;  3LR6 A;  2B63 A;  2LTH A;  2JA5 A;  2LYI A;  4BAA A;  2A68 D;  4QIW A;  2HWG A;  2O5J D;  3H0G A;  2N1D B;  4C6G A;  2LKM B;  4CEI A;  2F5J A;  3GTP A;  5IZ2 A;  2MX8 A;  2R92 A;  3GTG A;  1EZA A;  1TWG A;  4V2R A;  2A6E D;  2MX9 A;  2X0O A;  1W27 A;  1T6P A;  3EZE A;  4FBS A;  4V2Q A;  1TWH A;  2X0P A;  4C5S A;  3CQZ A;  4BAB A;  2YU9 A;  2FIO A;  2MQA A;  1SFO A;  1Y1W A;  2R7Z A;  2JA6 A;  1I3Q A;  4CEJ A;  1TWC A;  4C5U A;  1YNJ D;  2LPJ A;  4C5R A;  1Y1V A;  2E2I A;  1R9T A;  2VUM A;  1I6V D;  2FIP A;  2K3O A;  2EZC A;  1I50 A;  2LPI A;  2NVY A;  1IW7 D;  3GTL A;  3GTM A;  2K3Q A;  3LR2 A;  2VK9 A;  2EZB A;  1SMY D;  1K83 A;  1YNN D;  2JA7 A;  3EZB A;  2CW0 D;  1T6J A;  3GTO A;  1EZB A;  1ZYR D;  2MP0 A; 
#chains in the Genus database with same CATH homology
 3LRD A;  2A6H D;  3LR8 A;  3GTK A;  2A69 D;  2E2H A;  3U4Q A;  2Y0N A;  3FKI A;  2BE5 D;  1TWF A;  4C2M A;  3GTQ A;  2K3N A;  3U44 A;  3GTJ A;  1WCM A;  1TWA A;  1HQM D;  2R93 A;  2AQL A;  2N3E A;  2X0Q A;  2NVX A;  4CEH A;  3LR6 A;  2B63 A;  2LTH A;  2JA5 A;  2LYI A;  2A68 D;  4QIW A;  2O5J D;  3H0G A;  2N1D B;  2LKM B;  4CEI A;  2F5J A;  3GTP A;  5IZ2 A;  2MX8 A;  2R92 A;  3GTG A;  1TWG A;  2A6E D;  2MX9 A;  2X0O A;  4FBS A;  1TWH A;  2X0P A;  3CQZ A;  2YU9 A;  2FIO A;  2MQA A;  1SFO A;  1Y1W A;  2R7Z A;  2JA6 A;  1I3Q A;  4CEJ A;  1TWC A;  1YNJ D;  2LPJ A;  1Y1V A;  2E2I A;  1R9T A;  2VUM A;  1I6V D;  2FIP A;  2K3O A;  1I50 A;  2LPI A;  2NVY A;  1IW7 D;  3GTL A;  3GTM A;  2K3Q A;  3LR2 A;  2VK9 A;  1SMY D;  1K83 A;  1YNN D;  2JA7 A;  2CW0 D;  3GTO A;  1ZYR D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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