2N3EA

Amino-terminal domain of latrodectus hesperus masp1 with neutralized acidic cluster
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
137
structure length
137
Chain Sequence
GMGQANTPWSSKANADAFINSFISAASNTGSFSQDQMENMSLIGNTLMAAMDNMGGRITPSKLQALDMAFASSVAQIAASQGGDLGVTTNAIADALTSAFYQTTGVVNSRFISEIRSLIGMFAQASANDVYASAGSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords Major ampullate spidroin 1
publication title High resolution structure of an engineered amino-terminal ampullate spider silk with neutralized charge cluster
rcsb
source organism Latrodectus hesperus
total genus 42
structure length 137
sequence length 137
ec nomenclature
pdb deposition date 2015-05-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16763 Spidroin_N Major ampullate spidroin 1, spider silk protein 1, N-term
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.70 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Enzyme I; Chain A, domain 2 2n3eA01
2LPJA 2LTHA 2MX9A 3LR2A 3LRDA 2N3EA 4FBSA 2LPIA 2K3QA 3LR8A 2MX8A 5IZ2A 3LR6A
chains in the Genus database with same CATH superfamily
3U4QA 2NVYA 4QIWA 4V2RA 2N3EA 1I50A 3H0GA 1TWGA 3FKIA 3LRDA 4C5SA 2JA6A 2EZBA 2A6HD 4V2QA 1TWHA 2YU9A 2R7ZA 2N1DB 3GTLA 3GTQA 2MX8A 2LPJA 1Y1WA 1ZYRD 4FBSA 4C5RA 3LR8A 2X0QA 2LTHA 3GTKA 1TWFA 2BE5D 3GTOA 1WCMA 2EZAA 3GTJA 4CEHA 3EZEA 1YNND 3NZ4A 1I6VD 1SFOA 5IZ2A 1T6JA 2CW0D 4C6GA 2MP0A 2FIPA 2LPIA 2HWGA 3GTGA 1IW7D 2F5JA 2MX9A 2A69D 3EZBA 1Y1VA 3CQZA 3GTMA 2R93A 1ZYMA 2Y0NA 2YIIA 2EZCA 2VK9A 2X0OA 3GTPA 4CEJA 1W27A 1TWAA 2NVXA 1I3QA 2LKMB 2E2HA 1K83A 2O5JD 2HROA 2K3NA 2MQAA 1YNJD 4C5UA 3U44A 2FIOA 4C2MA 1Y2MA 2X0PA 1EZBA 2K3OA 2B63A 2K3QA 1EZAA 4CQ5A 2A68D 2A6ED 1SMYD 2LYIA 2R92A 1T6PA 3LR2A 2AQLA 1R9TA 2E2IA 2VUMA 3LR6A 4CEIA 1TWCA 2JA7A 2JA5A 4BABA 1HQMD 4BAAA 3EZAA
chains in the Genus database with same CATH topology
3U4QA 2NVYA 4QIWA 2N3EA 1I50A 3H0GA 1TWGA 3FKIA 3LRDA 2JA6A 2A6HD 1TWHA 2YU9A 2R7ZA 2N1DB 3GTLA 3GTQA 2MX8A 2LPJA 1Y1WA 1ZYRD 4FBSA 3LR8A 2X0QA 2LTHA 3GTKA 1TWFA 2BE5D 3GTOA 1WCMA 3GTJA 4CEHA 1YNND 1I6VD 1SFOA 5IZ2A 2CW0D 2LPIA 2FIPA 3GTGA 1IW7D 2F5JA 2MX9A 2A69D 1Y1VA 3CQZA 3GTMA 2R93A 2Y0NA 2VK9A 2X0OA 3GTPA 4CEJA 1TWAA 2NVXA 1I3QA 2LKMB 2E2HA 1K83A 2O5JD 2K3NA 2MQAA 1YNJD 3U44A 2FIOA 4C2MA 2X0PA 2K3OA 2B63A 2K3QA 2A68D 2A6ED 1SMYD 2LYIA 2R92A 3LR2A 2AQLA 1R9TA 2E2IA 2VUMA 3LR6A 4CEIA 1TWCA 2JA7A 2JA5A 1HQMD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LPJ A;  2LTH A;  2MX9 A;  3LR2 A;  3LRD A;  2N3E A;  4FBS A;  2LPI A;  2K3Q A;  3LR8 A;  2MX8 A;  5IZ2 A;  3LR6 A; 
#chains in the Genus database with same CATH topology
 3U4Q A;  2NVY A;  4QIW A;  4V2R A;  2N3E A;  1I50 A;  3H0G A;  1TWG A;  3FKI A;  3LRD A;  4C5S A;  2JA6 A;  2EZB A;  2A6H D;  4V2Q A;  1TWH A;  2YU9 A;  2R7Z A;  2N1D B;  3GTL A;  3GTQ A;  2MX8 A;  2LPJ A;  1Y1W A;  1ZYR D;  4FBS A;  4C5R A;  3LR8 A;  2X0Q A;  2LTH A;  3GTK A;  1TWF A;  2BE5 D;  3GTO A;  1WCM A;  2EZA A;  3GTJ A;  4CEH A;  3EZE A;  1YNN D;  3NZ4 A;  1I6V D;  1SFO A;  5IZ2 A;  1T6J A;  2CW0 D;  4C6G A;  2MP0 A;  2FIP A;  2LPI A;  2HWG A;  3GTG A;  1IW7 D;  2F5J A;  2MX9 A;  2A69 D;  3EZB A;  1Y1V A;  3CQZ A;  3GTM A;  2R93 A;  1ZYM A;  2Y0N A;  2YII A;  2EZC A;  2VK9 A;  2X0O A;  3GTP A;  4CEJ A;  1W27 A;  1TWA A;  2NVX A;  1I3Q A;  2LKM B;  2E2H A;  1K83 A;  2O5J D;  2HRO A;  2K3N A;  2MQA A;  1YNJ D;  4C5U A;  3U44 A;  2FIO A;  4C2M A;  1Y2M A;  2X0P A;  1EZB A;  2K3O A;  2B63 A;  2K3Q A;  1EZA A;  4CQ5 A;  2A68 D;  2A6E D;  1SMY D;  2LYI A;  2R92 A;  1T6P A;  3LR2 A;  2AQL A;  1R9T A;  2E2I A;  2VUM A;  3LR6 A;  4CEI A;  1TWC A;  2JA7 A;  2JA5 A;  4BAB A;  1HQM D;  4BAA A;  3EZA A; 
#chains in the Genus database with same CATH homology
 3U4Q A;  2NVY A;  4QIW A;  2N3E A;  1I50 A;  3H0G A;  1TWG A;  3FKI A;  3LRD A;  2JA6 A;  2A6H D;  1TWH A;  2YU9 A;  2R7Z A;  2N1D B;  3GTL A;  3GTQ A;  2MX8 A;  2LPJ A;  1Y1W A;  1ZYR D;  4FBS A;  3LR8 A;  2X0Q A;  2LTH A;  3GTK A;  1TWF A;  2BE5 D;  3GTO A;  1WCM A;  3GTJ A;  4CEH A;  1YNN D;  1I6V D;  1SFO A;  5IZ2 A;  2CW0 D;  2LPI A;  2FIP A;  3GTG A;  1IW7 D;  2F5J A;  2MX9 A;  2A69 D;  1Y1V A;  3CQZ A;  3GTM A;  2R93 A;  2Y0N A;  2VK9 A;  2X0O A;  3GTP A;  4CEJ A;  1TWA A;  2NVX A;  1I3Q A;  2LKM B;  2E2H A;  1K83 A;  2O5J D;  2K3N A;  2MQA A;  1YNJ D;  3U44 A;  2FIO A;  4C2M A;  2X0P A;  2K3O A;  2B63 A;  2K3Q A;  2A68 D;  2A6E D;  1SMY D;  2LYI A;  2R92 A;  3LR2 A;  2AQL A;  1R9T A;  2E2I A;  2VUM A;  3LR6 A;  4CEI A;  1TWC A;  2JA7 A;  2JA5 A;  1HQM D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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