4CQ5A

Structural investigations into the stereochemistry and activity of a phenylalanine-2,3-aminomutase from taxus chinensis
Total Genus 268
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
268
sequence length
667
structure length
638
Chain Sequence
SHVKDILGLINAFNEVKKITVDGTTPITVAHVAALARRHDVKVALEAEQCRARVETCSSWVQRKAEDGADIAGVTTGFGACSSRRTNRLSELQESLIRCLLAGVFTLPATATRSAMLLRLNSFTYGCSGIRWEVMEALEKLLNSNVSPKVPLRGSVSDLIPLAYIAGLLIGKPSVIARIGDDVEVPAPEALSRVGLRPFKLQAKEGLALVNGTSFATAVASTVMYDANVLLLLVETLCGMFCEVIFGREEFAHPLIHKVKPHPGQIESAELLEWLLRSSPFQELSREYYSIDKLKKPKQDRYALRSSPQWLAPLVQTIRDATTTVETEVNSANDNPIIDHANDRALHGANFQGSAVGFYMDYVRIAVAGLGKLLFAQFTELMIEYYSNGLPGNLSLGPDLSVDYGLKGLDIAMAAYSSELQYLANPVTTHVHSAEQHNQDINSLALISARKTEEALDILKLMIASHLTAMCQAVDLRQLEEALVKVVENVVSTLADECGLPNDTKARLLYVAKAVPVYTYLESPCDPTLPLLLGLKQSCFDTILALHDTLVDRLAEFEKRLSDRLENEMTAVRVLYEKVRIQGSKFLPFYRFVREELDTGVMSARREQTPQEDVQKVFDAIADGRITVPLLHCLQGFL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Lyase
source organism Taxus wallichiana var. chinensis
publication title Structural Investigations Into the Stereochemistry and Activity of a Phenylalanine-2,3-Aminomutase from Taxus Chinensis.
pubmed doi rcsb
molecule keywords PHENYLALANINE AMINOMUTASE
total genus 268
structure length 638
sequence length 667
chains with identical sequence B, C, D
ec nomenclature ec 4.3.1.24: Phenylalanine ammonia-lyase.
pdb deposition date 2014-02-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00221 Lyase_aromatic Aromatic amino acid lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.20 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Phenylalanine ammonia-lyase 1; domain 3 4cq5A03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 4cq5A01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 4cq5A02
1I0AA 4ADMA 1FUQA 4EFCA 3R6VA 3R6QA 1GKJA 4FLCA 5D6BA 2NYFA 3NZ4A 1EB4A 1RE5A 1C3UA 1Y2MA 1TJVA 2RJRA 1U15A 2QVEA 4C6GA 1JSWA 3KDYA 4NSLA 5EYVA 1K62A 3GTDA 4V2QA 3CZOA 4APBA 1TJWA 1VDKA 2O7EA 2O7DA 1KQ7A 2NYNA 1W27A 1J3UA 2VD6A 1K7WA 4V2RA 1YISA 1U16A 2J91A 3R6YA 4C5RA 2X75A 1GKMA 3RD8A 4C5UA 2RJSA 1YFMA 2E9FA 3GZHA 1C3CA 4NLEA 3TV2A 1HY1A 4APAA 1T6JA 1XWOA 3BHGA 1DCNA 2O78A 4HGVA 4FFXA 2O7BA 1YFEA 5F92A 4BABA 1FURA 3NO9A 4MX2A 3E04A 1GK3A 4BAAA 2PTRA 1B8FA 5HW2A 2PFMA 1FUPA 1T6PA 3C8TA 1HY0A 4CQ5A 2QGAB 2YIIA 3OCEA 1TJUA 3KDZA 2PTSA 4C5SA 1TJ7A 2OHYA 3RRPA 2O7FA 4EEIA 2FUSA 3OCFA 1FUOA 1AUWA 4ADLA 1DOFA 3QBPA 5EYTA 2PTQA 1GK2A 2HVGA 5F91A 1Q5NA 3UNVA 2O6YA
chains in the Genus database with same CATH superfamily
2EZAA 1I0AA 4ADMA 2VL7A 2K3QA 2VUMA 1XMDA 2X0QA 2JA5A 1FUQA 3GTLA 4EFCA 3R6VA 1XL8A 3R6QA 2A6HD 1GKJA 4FLCA 1Y1VA 2R7ZA 1ZYRD 5D6BA 2X0PA 2NVYA 2NYFA 2N1DB 3NZ4A 1XL7A 1EB4A 3CRW1 1RE5A 2FELA 1TWHA 1C3UA 1Y2MA 1TJVA 5IZ2A 3GTKA 2RJRA 4CEIA 2A6ED 2MX8A 1U15A 2QVEA 3CRVA 2MP0A 1Y1WA 4C6GA 2A69D 2FENA 1K83A 2E2IA 1JSWA 3KDYA 1TWAA 4NSLA 5EYVA 1K62A 3GTDA 1ZYMA 4V2QA 3CZOA 4APBA 1TJWA 1I6VD 1VDKA 3GTOA 2O7EA 3U4QA 2O7DA 1KQ7A 2LPIA 2NYNA 1W27A 1J3UA 2VD6A 2FIOA 1K7WA 4V2RA 4QIWA 1SFOA 1U16A 2R92A 1YISA 2VK9A 2J91A 1EZBA 3R6YA 4C5RA 2HROA 2X75A 3LRDA 1TWCA 2LYIA 1GKMA 3RD8A 4C5UA 2X0OA 2RJSA 1YNJD 4WNLA 2LPJA 3U44A 2O5JD 1WCMA 2E2HA 1YFMA 2K3OA 2E9FA 3GZHA 1XLYA 1C3CA 1TWGA 4NLEA 3TV2A 2F5JA 2VSFA 1HY1A 2JA7A 4APAA 1T6JA 1R9TA 1XWOA 2N3EA 2BE5D 3H0GA 3BHGA 1DCNA 2O78A 1I50A 4HGVA 4CEJA 1EZAA 4FFXA 2FIPA 2O7BA 3GTPA 1YFEA 5F92A 4BABA 3GTQA 2HWGA 1FURA 3NO9A 4MX2A 1TWFA 3E04A 1GK3A 4BAAA 2PTRA 3GTMA 1B8FA 5HW2A 2PFMA 1FUPA 1T6PA 5M0IA 3EZAA 2MQAA 2JA6A 1HY0A 4C2MA 4CQ5A 2YU9A 2QGAB 3C8TA 5M0JA 4FBSA 2YIIA 3EZEA 2Y0NA 3OCEA 2CW0D 1XMCA 1TJUA 3KDZA 2PTSA 4C5SA 1TJ7A 2R93A 2B63A 3GTJA 2OHYA 4A15A 3RRPA 3GTGA 2MX9A 2O7FA 2LTHA 2AQLA 1I3QA 3FKIA 3LR2A 4EEIA 2NVXA 3LR6A 2FUSA 3OCFA 2EZCA 2A68D 1FUOA 1AUWA 3EZBA 4CEHA 5H8WA 2K3NA 4ADLA 1YNND 1DOFA 3QBPA 5EYTA 2PTQA 1IW7D 1HQMD 1GK2A 2EZBA 2HVGA 5F91A 1Q5NA 1SMYD 3CQZA 3UNVA 3LR8A 2O6YA 2LKMB
chains in the Genus database with same CATH topology
1I0AA 4ADMA 1FUQA 4EFCA 3R6VA 3R6QA 1GKJA 4FLCA 5D6BA 2NYFA 3NZ4A 1EB4A 1RE5A 1C3UA 1Y2MA 1TJVA 2RJRA 1U15A 2QVEA 4C6GA 1JSWA 3KDYA 4NSLA 5EYVA 1K62A 3GTDA 4V2QA 3CZOA 4APBA 1TJWA 1VDKA 2O7EA 2O7DA 1KQ7A 2NYNA 1W27A 1J3UA 2VD6A 1K7WA 4V2RA 1YISA 1U16A 2J91A 3R6YA 4C5RA 2X75A 1GKMA 3RD8A 4C5UA 2RJSA 1YFMA 2E9FA 3GZHA 1C3CA 4NLEA 3TV2A 1HY1A 4APAA 1T6JA 1XWOA 3BHGA 1DCNA 2O78A 4HGVA 4FFXA 2O7BA 1YFEA 5F92A 4BABA 1FURA 3NO9A 4MX2A 3E04A 1GK3A 4BAAA 2PTRA 1B8FA 5HW2A 2PFMA 1FUPA 1T6PA 3C8TA 1HY0A 4CQ5A 2QGAB 2YIIA 3OCEA 1TJUA 3KDZA 2PTSA 4C5SA 1TJ7A 2OHYA 3RRPA 2O7FA 4EEIA 2FUSA 3OCFA 1FUOA 1AUWA 4ADLA 1DOFA 3QBPA 5EYTA 2PTQA 1GK2A 2HVGA 5F91A 1Q5NA 3UNVA 2O6YA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1I0A A;  4ADM A;  1FUQ A;  4EFC A;  3R6V A;  3R6Q A;  1GKJ A;  4FLC A;  5D6B A;  2NYF A;  3NZ4 A;  1EB4 A;  1RE5 A;  1C3U A;  1Y2M A;  1TJV A;  2RJR A;  1U15 A;  2QVE A;  4C6G A;  1JSW A;  3KDY A;  4NSL A;  5EYV A;  1K62 A;  3GTD A;  4V2Q A;  3CZO A;  4APB A;  1TJW A;  1VDK A;  2O7E A;  2O7D A;  1KQ7 A;  2NYN A;  1W27 A;  1J3U A;  2VD6 A;  1K7W A;  4V2R A;  1YIS A;  1U16 A;  2J91 A;  3R6Y A;  4C5R A;  2X75 A;  1GKM A;  3RD8 A;  4C5U A;  2RJS A;  1YFM A;  2E9F A;  3GZH A;  1C3C A;  4NLE A;  3TV2 A;  1HY1 A;  4APA A;  1T6J A;  1XWO A;  3BHG A;  1DCN A;  2O78 A;  4HGV A;  4FFX A;  2O7B A;  1YFE A;  5F92 A;  4BAB A;  1FUR A;  3NO9 A;  4MX2 A;  3E04 A;  1GK3 A;  4BAA A;  2PTR A;  1B8F A;  5HW2 A;  2PFM A;  1FUP A;  1T6P A;  3C8T A;  1HY0 A;  4CQ5 A;  2QGA B;  2YII A;  3OCE A;  1TJU A;  3KDZ A;  2PTS A;  4C5S A;  1TJ7 A;  2OHY A;  3RRP A;  2O7F A;  4EEI A;  2FUS A;  3OCF A;  1FUO A;  1AUW A;  4ADL A;  1DOF A;  3QBP A;  5EYT A;  2PTQ A;  1GK2 A;  2HVG A;  5F91 A;  1Q5N A;  3UNV A;  2O6Y A; 
#chains in the Genus database with same CATH topology
 2EZA A;  1I0A A;  4ADM A;  2VL7 A;  2K3Q A;  2VUM A;  1XMD A;  2X0Q A;  2JA5 A;  1FUQ A;  3GTL A;  4EFC A;  3R6V A;  1XL8 A;  3R6Q A;  2A6H D;  1GKJ A;  4FLC A;  1Y1V A;  2R7Z A;  1ZYR D;  5D6B A;  2X0P A;  2NVY A;  2NYF A;  2N1D B;  3NZ4 A;  1XL7 A;  1EB4 A;  3CRW 1;  1RE5 A;  2FEL A;  1TWH A;  1C3U A;  1Y2M A;  1TJV A;  5IZ2 A;  3GTK A;  2RJR A;  4CEI A;  2A6E D;  2MX8 A;  1U15 A;  2QVE A;  3CRV A;  2MP0 A;  1Y1W A;  4C6G A;  2A69 D;  2FEN A;  1K83 A;  2E2I A;  1JSW A;  3KDY A;  1TWA A;  4NSL A;  5EYV A;  1K62 A;  3GTD A;  1ZYM A;  4V2Q A;  3CZO A;  4APB A;  1TJW A;  1I6V D;  1VDK A;  3GTO A;  2O7E A;  3U4Q A;  2O7D A;  1KQ7 A;  2LPI A;  2NYN A;  1W27 A;  1J3U A;  2VD6 A;  2FIO A;  1K7W A;  4V2R A;  4QIW A;  1SFO A;  1U16 A;  2R92 A;  1YIS A;  2VK9 A;  2J91 A;  1EZB A;  3R6Y A;  4C5R A;  2HRO A;  2X75 A;  3LRD A;  1TWC A;  2LYI A;  1GKM A;  3RD8 A;  4C5U A;  2X0O A;  2RJS A;  1YNJ D;  4WNL A;  2LPJ A;  3U44 A;  2O5J D;  1WCM A;  2E2H A;  1YFM A;  2K3O A;  2E9F A;  3GZH A;  1XLY A;  1C3C A;  1TWG A;  4NLE A;  3TV2 A;  2F5J A;  2VSF A;  1HY1 A;  2JA7 A;  4APA A;  1T6J A;  1R9T A;  1XWO A;  2N3E A;  2BE5 D;  3H0G A;  3BHG A;  1DCN A;  2O78 A;  1I50 A;  4HGV A;  4CEJ A;  1EZA A;  4FFX A;  2FIP A;  2O7B A;  3GTP A;  1YFE A;  5F92 A;  4BAB A;  3GTQ A;  2HWG A;  1FUR A;  3NO9 A;  4MX2 A;  1TWF A;  3E04 A;  1GK3 A;  4BAA A;  2PTR A;  3GTM A;  1B8F A;  5HW2 A;  2PFM A;  1FUP A;  1T6P A;  5M0I A;  3EZA A;  2MQA A;  2JA6 A;  1HY0 A;  4C2M A;  4CQ5 A;  2YU9 A;  2QGA B;  3C8T A;  5M0J A;  4FBS A;  2YII A;  3EZE A;  2Y0N A;  3OCE A;  2CW0 D;  1XMC A;  1TJU A;  3KDZ A;  2PTS A;  4C5S A;  1TJ7 A;  2R93 A;  2B63 A;  3GTJ A;  2OHY A;  4A15 A;  3RRP A;  3GTG A;  2MX9 A;  2O7F A;  2LTH A;  2AQL A;  1I3Q A;  3FKI A;  3LR2 A;  4EEI A;  2NVX A;  3LR6 A;  2FUS A;  3OCF A;  2EZC A;  2A68 D;  1FUO A;  1AUW A;  3EZB A;  4CEH A;  5H8W A;  2K3N A;  4ADL A;  1YNN D;  1DOF A;  3QBP A;  5EYT A;  2PTQ A;  1IW7 D;  1HQM D;  1GK2 A;  2EZB A;  2HVG A;  5F91 A;  1Q5N A;  1SMY D;  3CQZ A;  3UNV A;  3LR8 A;  2O6Y A;  2LKM B; 
#chains in the Genus database with same CATH homology
 1I0A A;  4ADM A;  1FUQ A;  4EFC A;  3R6V A;  3R6Q A;  1GKJ A;  4FLC A;  5D6B A;  2NYF A;  3NZ4 A;  1EB4 A;  1RE5 A;  1C3U A;  1Y2M A;  1TJV A;  2RJR A;  1U15 A;  2QVE A;  4C6G A;  1JSW A;  3KDY A;  4NSL A;  5EYV A;  1K62 A;  3GTD A;  4V2Q A;  3CZO A;  4APB A;  1TJW A;  1VDK A;  2O7E A;  2O7D A;  1KQ7 A;  2NYN A;  1W27 A;  1J3U A;  2VD6 A;  1K7W A;  4V2R A;  1YIS A;  1U16 A;  2J91 A;  3R6Y A;  4C5R A;  2X75 A;  1GKM A;  3RD8 A;  4C5U A;  2RJS A;  1YFM A;  2E9F A;  3GZH A;  1C3C A;  4NLE A;  3TV2 A;  1HY1 A;  4APA A;  1T6J A;  1XWO A;  3BHG A;  1DCN A;  2O78 A;  4HGV A;  4FFX A;  2O7B A;  1YFE A;  5F92 A;  4BAB A;  1FUR A;  3NO9 A;  4MX2 A;  3E04 A;  1GK3 A;  4BAA A;  2PTR A;  1B8F A;  5HW2 A;  2PFM A;  1FUP A;  1T6P A;  3C8T A;  1HY0 A;  4CQ5 A;  2QGA B;  2YII A;  3OCE A;  1TJU A;  3KDZ A;  2PTS A;  4C5S A;  1TJ7 A;  2OHY A;  3RRP A;  2O7F A;  4EEI A;  2FUS A;  3OCF A;  1FUO A;  1AUW A;  4ADL A;  1DOF A;  3QBP A;  5EYT A;  2PTQ A;  1GK2 A;  2HVG A;  5F91 A;  1Q5N A;  3UNV A;  2O6Y A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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