4CQ5A

Structural investigations into the stereochemistry and activity of a phenylalanine-2,3-aminomutase from taxus chinensis
Total Genus 268
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
268
sequence length
667
structure length
638
Chain Sequence
SHVKDILGLINAFNEVKKITVDGTTPITVAHVAALARRHDVKVALEAEQCRARVETCSSWVQRKAEDGADIAGVTTGFGACSSRRTNRLSELQESLIRCLLAGVFTLPATATRSAMLLRLNSFTYGCSGIRWEVMEALEKLLNSNVSPKVPLRGSVSDLIPLAYIAGLLIGKPSVIARIGDDVEVPAPEALSRVGLRPFKLQAKEGLALVNGTSFATAVASTVMYDANVLLLLVETLCGMFCEVIFGREEFAHPLIHKVKPHPGQIESAELLEWLLRSSPFQELSREYYSIDKLKKPKQDRYALRSSPQWLAPLVQTIRDATTTVETEVNSANDNPIIDHANDRALHGANFQGSAVGFYMDYVRIAVAGLGKLLFAQFTELMIEYYSNGLPGNLSLGPDLSVDYGLKGLDIAMAAYSSELQYLANPVTTHVHSAEQHNQDINSLALISARKTEEALDILKLMIASHLTAMCQAVDLRQLEEALVKVVENVVSTLADECGLPNDTKARLLYVAKAVPVYTYLESPCDPTLPLLLGLKQSCFDTILALHDTLVDRLAEFEKRLSDRLENEMTAVRVLYEKVRIQGSKFLPFYRFVREELDTGVMSARREQTPQEDVQKVFDAIADGRITVPLLHCLQGFL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Lyase
molecule keywords PHENYLALANINE AMINOMUTASE
publication title Structural Investigations Into the Stereochemistry and Activity of a Phenylalanine-2,3-Aminomutase from Taxus Chinensis.
pubmed doi rcsb
source organism Taxus wallichiana var. chinensis
total genus 268
structure length 638
sequence length 667
chains with identical sequence B, C, D
ec nomenclature ec 4.3.1.24: Phenylalanine ammonia-lyase.
pdb deposition date 2014-02-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00221 Lyase_aromatic Aromatic amino acid lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.20 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Phenylalanine ammonia-lyase 1; domain 3 4cq5A03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 4cq5A01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 4cq5A02
1GKMA 1FUPA 4EEIA 5EYVA 2E9FA 2YIIA 1GK2A 1B8FA 4NLEA 3BHGA 1VDKA 2QGAB 1Y2MA 3OCEA 3NZ4A 1J3UA 2X75A 3NO9A 4ADLA 4APBA 1Q5NA 1YFEA 4C6GA 1FUOA 3CZOA 2NYFA 4C5SA 5F92A 4MX2A 4FFXA 1TJ7A 1W27A 3R6QA 3GZHA 5HW2A 2O7DA 2RJSA 3KDYA 3RD8A 1EB4A 4CQ5A 2PTSA 2FUSA 3UNVA 3QBPA 1FURA 4C5UA 4FLCA 1XWOA 3KDZA 2PFMA 2O78A 2RJRA 1KQ7A 1C3CA 1C3UA 5EYTA 2PTRA 2O7BA 1FUQA 1GK3A 1I0AA 4BABA 3R6YA 2O6YA 1K7WA 2VD6A 4HGVA 2HVGA 3E04A 1JSWA 2PTQA 1RE5A 3TV2A 1DCNA 3GTDA 4NSLA 2OHYA 2NYNA 3C8TA 1DOFA 4V2RA 1TJVA 4V2QA 1TJWA 5D6BA 1HY0A 4BAAA 2O7EA 1U15A 1AUWA 1U16A 4APAA 1TJUA 1GKJA 2J91A 2QVEA 1T6PA 1HY1A 2O7FA 1T6JA 1YISA 4EFCA 3R6VA 1YFMA 4C5RA 1K62A 5F91A 3OCFA 3RRPA 4ADMA
chains in the Genus database with same CATH superfamily
3LRDA 1GKMA 2F5JA 1FUPA 2N3EA 4EEIA 2FIOA 5EYVA 2E9FA 2YIIA 1GK2A 1B8FA 4NLEA 3BHGA 4WNLA 1VDKA 2CW0D 2QGAB 4CEHA 3GTQA 3EZEA 3LR6A 1Y2MA 3OCEA 3NZ4A 2VL7A 2K3NA 1J3UA 2VUMA 1TWHA 2X75A 2NVXA 2MX9A 2LTHA 3NO9A 4ADLA 2LYIA 4APBA 4FBSA 1SMYD 2EZAA 1Q5NA 1YFEA 5H8WA 4C6GA 1FUOA 3CZOA 2NYFA 2E2HA 4C5SA 1YNJD 5F92A 4MX2A 4FFXA 3U44A 1W27A 4CEJA 3GTLA 1TJ7A 3R6QA 1HQMD 1TWAA 3GZHA 5HW2A 2O7DA 2RJSA 2VK9A 2FIPA 3KDYA 1XMCA 3RD8A 1ZYRD 1EB4A 2FENA 4CQ5A 2PTSA 2MX8A 3FKIA 2FUSA 2R92A 1IW7D 2JA7A 3UNVA 2MQAA 3QBPA 1FURA 2YU9A 2X0PA 2JA6A 4C5UA 2LPIA 2MP0A 1TWCA 2O5JD 1EZAA 1XWOA 4FLCA 3KDZA 4QIWA 2PFMA 2O78A 2RJRA 3LR2A 3GTMA 1KQ7A 1YNND 1C3CA 1I50A 1C3UA 5EYTA 2PTRA 2O7BA 2X0OA 3U4QA 3LR8A 1FUQA 3H0GA 1GK3A 1I0AA 3CRVA 1TWFA 1XL8A 4BABA 3R6YA 2EZCA 3GTPA 1K7WA 2O6YA 5M0IA 2BE5D 1XL7A 2LKMB 2VD6A 4HGVA 2HVGA 2HWGA 3CRW1 3E04A 1JSWA 2K3QA 1RE5A 2EZBA 2PTQA 3TV2A 1DCNA 3GTDA 4A15A 5M0JA 2A69D 4NSLA 2OHYA 1I3QA 2R7ZA 2NYNA 3GTOA 2E2IA 2JA5A 3C8TA 1DOFA 4V2RA 2B63A 4V2QA 5IZ2A 1TJVA 2AQLA 1TJWA 1R9TA 2K3OA 2Y0NA 1Y1VA 3EZBA 5D6BA 2N1DB 1HY0A 4BAAA 2O7EA 2A68D 1U15A 2VSFA 1AUWA 4CEIA 3GTKA 1U16A 3CQZA 4APAA 3GTJA 2NVYA 1GKJA 1TJUA 1XLYA 2J91A 2QVEA 1ZYMA 1T6PA 2A6HD 1HY1A 2R93A 2O7FA 1K83A 1EZBA 4C2MA 1T6JA 2A6ED 1YISA 1TWGA 3GTGA 1I6VD 3R6VA 4EFCA 1YFMA 4C5RA 1WCMA 1K62A 5F91A 1SFOA 2FELA 2HROA 3EZAA 3OCFA 2LPJA 1Y1WA 3RRPA 1XMDA 4ADMA 2X0QA
chains in the Genus database with same CATH topology
1GKMA 1FUPA 4EEIA 5EYVA 2E9FA 2YIIA 1GK2A 1B8FA 4NLEA 3BHGA 1VDKA 2QGAB 1Y2MA 3OCEA 3NZ4A 1J3UA 2X75A 3NO9A 4ADLA 4APBA 1Q5NA 1YFEA 4C6GA 1FUOA 3CZOA 2NYFA 4C5SA 5F92A 4MX2A 4FFXA 1TJ7A 1W27A 3R6QA 3GZHA 5HW2A 2O7DA 2RJSA 3KDYA 3RD8A 1EB4A 4CQ5A 2PTSA 2FUSA 3UNVA 3QBPA 1FURA 4C5UA 4FLCA 1XWOA 3KDZA 2PFMA 2O78A 2RJRA 1KQ7A 1C3CA 1C3UA 5EYTA 2PTRA 2O7BA 1FUQA 1GK3A 1I0AA 4BABA 3R6YA 2O6YA 1K7WA 2VD6A 4HGVA 2HVGA 3E04A 1JSWA 2PTQA 1RE5A 3TV2A 1DCNA 3GTDA 4NSLA 2OHYA 2NYNA 3C8TA 1DOFA 4V2RA 1TJVA 4V2QA 1TJWA 5D6BA 1HY0A 4BAAA 2O7EA 1U15A 1AUWA 1U16A 4APAA 1TJUA 1GKJA 2J91A 2QVEA 1T6PA 1HY1A 2O7FA 1T6JA 1YISA 4EFCA 3R6VA 1YFMA 4C5RA 1K62A 5F91A 3OCFA 3RRPA 4ADMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GKM A;  1FUP A;  4EEI A;  5EYV A;  2E9F A;  2YII A;  1GK2 A;  1B8F A;  4NLE A;  3BHG A;  1VDK A;  2QGA B;  1Y2M A;  3OCE A;  3NZ4 A;  1J3U A;  2X75 A;  3NO9 A;  4ADL A;  4APB A;  1Q5N A;  1YFE A;  4C6G A;  1FUO A;  3CZO A;  2NYF A;  4C5S A;  5F92 A;  4MX2 A;  4FFX A;  1TJ7 A;  1W27 A;  3R6Q A;  3GZH A;  5HW2 A;  2O7D A;  2RJS A;  3KDY A;  3RD8 A;  1EB4 A;  4CQ5 A;  2PTS A;  2FUS A;  3UNV A;  3QBP A;  1FUR A;  4C5U A;  4FLC A;  1XWO A;  3KDZ A;  2PFM A;  2O78 A;  2RJR A;  1KQ7 A;  1C3C A;  1C3U A;  5EYT A;  2PTR A;  2O7B A;  1FUQ A;  1GK3 A;  1I0A A;  4BAB A;  3R6Y A;  2O6Y A;  1K7W A;  2VD6 A;  4HGV A;  2HVG A;  3E04 A;  1JSW A;  2PTQ A;  1RE5 A;  3TV2 A;  1DCN A;  3GTD A;  4NSL A;  2OHY A;  2NYN A;  3C8T A;  1DOF A;  4V2R A;  1TJV A;  4V2Q A;  1TJW A;  5D6B A;  1HY0 A;  4BAA A;  2O7E A;  1U15 A;  1AUW A;  1U16 A;  4APA A;  1TJU A;  1GKJ A;  2J91 A;  2QVE A;  1T6P A;  1HY1 A;  2O7F A;  1T6J A;  1YIS A;  4EFC A;  3R6V A;  1YFM A;  4C5R A;  1K62 A;  5F91 A;  3OCF A;  3RRP A;  4ADM A; 
#chains in the Genus database with same CATH topology
 3LRD A;  1GKM A;  2F5J A;  1FUP A;  2N3E A;  4EEI A;  2FIO A;  5EYV A;  2E9F A;  2YII A;  1GK2 A;  1B8F A;  4NLE A;  3BHG A;  4WNL A;  1VDK A;  2CW0 D;  2QGA B;  4CEH A;  3GTQ A;  3EZE A;  3LR6 A;  1Y2M A;  3OCE A;  3NZ4 A;  2VL7 A;  2K3N A;  1J3U A;  2VUM A;  1TWH A;  2X75 A;  2NVX A;  2MX9 A;  2LTH A;  3NO9 A;  4ADL A;  2LYI A;  4APB A;  4FBS A;  1SMY D;  2EZA A;  1Q5N A;  1YFE A;  5H8W A;  4C6G A;  1FUO A;  3CZO A;  2NYF A;  2E2H A;  4C5S A;  1YNJ D;  5F92 A;  4MX2 A;  4FFX A;  3U44 A;  1W27 A;  4CEJ A;  3GTL A;  1TJ7 A;  3R6Q A;  1HQM D;  1TWA A;  3GZH A;  5HW2 A;  2O7D A;  2RJS A;  2VK9 A;  2FIP A;  3KDY A;  1XMC A;  3RD8 A;  1ZYR D;  1EB4 A;  2FEN A;  4CQ5 A;  2PTS A;  2MX8 A;  3FKI A;  2FUS A;  2R92 A;  1IW7 D;  2JA7 A;  3UNV A;  2MQA A;  3QBP A;  1FUR A;  2YU9 A;  2X0P A;  2JA6 A;  4C5U A;  2LPI A;  2MP0 A;  1TWC A;  2O5J D;  1EZA A;  1XWO A;  4FLC A;  3KDZ A;  4QIW A;  2PFM A;  2O78 A;  2RJR A;  3LR2 A;  3GTM A;  1KQ7 A;  1YNN D;  1C3C A;  1I50 A;  1C3U A;  5EYT A;  2PTR A;  2O7B A;  2X0O A;  3U4Q A;  3LR8 A;  1FUQ A;  3H0G A;  1GK3 A;  1I0A A;  3CRV A;  1TWF A;  1XL8 A;  4BAB A;  3R6Y A;  2EZC A;  3GTP A;  1K7W A;  2O6Y A;  5M0I A;  2BE5 D;  1XL7 A;  2LKM B;  2VD6 A;  4HGV A;  2HVG A;  2HWG A;  3CRW 1;  3E04 A;  1JSW A;  2K3Q A;  1RE5 A;  2EZB A;  2PTQ A;  3TV2 A;  1DCN A;  3GTD A;  4A15 A;  5M0J A;  2A69 D;  4NSL A;  2OHY A;  1I3Q A;  2R7Z A;  2NYN A;  3GTO A;  2E2I A;  2JA5 A;  3C8T A;  1DOF A;  4V2R A;  2B63 A;  4V2Q A;  5IZ2 A;  1TJV A;  2AQL A;  1TJW A;  1R9T A;  2K3O A;  2Y0N A;  1Y1V A;  3EZB A;  5D6B A;  2N1D B;  1HY0 A;  4BAA A;  2O7E A;  2A68 D;  1U15 A;  2VSF A;  1AUW A;  4CEI A;  3GTK A;  1U16 A;  3CQZ A;  4APA A;  3GTJ A;  2NVY A;  1GKJ A;  1TJU A;  1XLY A;  2J91 A;  2QVE A;  1ZYM A;  1T6P A;  2A6H D;  1HY1 A;  2R93 A;  2O7F A;  1K83 A;  1EZB A;  4C2M A;  1T6J A;  2A6E D;  1YIS A;  1TWG A;  3GTG A;  1I6V D;  3R6V A;  4EFC A;  1YFM A;  4C5R A;  1WCM A;  1K62 A;  5F91 A;  1SFO A;  2FEL A;  2HRO A;  3EZA A;  3OCF A;  2LPJ A;  1Y1W A;  3RRP A;  1XMD A;  4ADM A;  2X0Q A; 
#chains in the Genus database with same CATH homology
 1GKM A;  1FUP A;  4EEI A;  5EYV A;  2E9F A;  2YII A;  1GK2 A;  1B8F A;  4NLE A;  3BHG A;  1VDK A;  2QGA B;  1Y2M A;  3OCE A;  3NZ4 A;  1J3U A;  2X75 A;  3NO9 A;  4ADL A;  4APB A;  1Q5N A;  1YFE A;  4C6G A;  1FUO A;  3CZO A;  2NYF A;  4C5S A;  5F92 A;  4MX2 A;  4FFX A;  1TJ7 A;  1W27 A;  3R6Q A;  3GZH A;  5HW2 A;  2O7D A;  2RJS A;  3KDY A;  3RD8 A;  1EB4 A;  4CQ5 A;  2PTS A;  2FUS A;  3UNV A;  3QBP A;  1FUR A;  4C5U A;  4FLC A;  1XWO A;  3KDZ A;  2PFM A;  2O78 A;  2RJR A;  1KQ7 A;  1C3C A;  1C3U A;  5EYT A;  2PTR A;  2O7B A;  1FUQ A;  1GK3 A;  1I0A A;  4BAB A;  3R6Y A;  2O6Y A;  1K7W A;  2VD6 A;  4HGV A;  2HVG A;  3E04 A;  1JSW A;  2PTQ A;  1RE5 A;  3TV2 A;  1DCN A;  3GTD A;  4NSL A;  2OHY A;  2NYN A;  3C8T A;  1DOF A;  4V2R A;  1TJV A;  4V2Q A;  1TJW A;  5D6B A;  1HY0 A;  4BAA A;  2O7E A;  1U15 A;  1AUW A;  1U16 A;  4APA A;  1TJU A;  1GKJ A;  2J91 A;  2QVE A;  1T6P A;  1HY1 A;  2O7F A;  1T6J A;  1YIS A;  4EFC A;  3R6V A;  1YFM A;  4C5R A;  1K62 A;  5F91 A;  3OCF A;  3RRP A;  4ADM A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...