4CQ5A

Structural investigations into the stereochemistry and activity of a phenylalanine-2,3-aminomutase from taxus chinensis
Total Genus 268
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
268
sequence length
667
structure length
638
Chain Sequence
SHVKDILGLINAFNEVKKITVDGTTPITVAHVAALARRHDVKVALEAEQCRARVETCSSWVQRKAEDGADIAGVTTGFGACSSRRTNRLSELQESLIRCLLAGVFTLPATATRSAMLLRLNSFTYGCSGIRWEVMEALEKLLNSNVSPKVPLRGSVSDLIPLAYIAGLLIGKPSVIARIGDDVEVPAPEALSRVGLRPFKLQAKEGLALVNGTSFATAVASTVMYDANVLLLLVETLCGMFCEVIFGREEFAHPLIHKVKPHPGQIESAELLEWLLRSSPFQELSREYYSIDKLKKPKQDRYALRSSPQWLAPLVQTIRDATTTVETEVNSANDNPIIDHANDRALHGANFQGSAVGFYMDYVRIAVAGLGKLLFAQFTELMIEYYSNGLPGNLSLGPDLSVDYGLKGLDIAMAAYSSELQYLANPVTTHVHSAEQHNQDINSLALISARKTEEALDILKLMIASHLTAMCQAVDLRQLEEALVKVVENVVSTLADECGLPNDTKARLLYVAKAVPVYTYLESPCDPTLPLLLGLKQSCFDTILALHDTLVDRLAEFEKRLSDRLENEMTAVRVLYEKVRIQGSKFLPFYRFVREELDTGVMSARREQTPQEDVQKVFDAIADGRITVPLLHCLQGFL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords PHENYLALANINE AMINOMUTASE
publication title Structural Investigations Into the Stereochemistry and Activity of a Phenylalanine-2,3-Aminomutase from Taxus Chinensis.
pubmed doi rcsb
source organism Taxus wallichiana var. chinensis
molecule tags Lyase
total genus 268
structure length 638
sequence length 667
chains with identical sequence B, C, D
ec nomenclature ec 4.3.1.24: Phenylalanine ammonia-lyase.
pdb deposition date 2014-02-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00221 Lyase_aromatic Aromatic amino acid lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.20 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Phenylalanine ammonia-lyase 1; domain 3 4cq5A03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 4cq5A01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 4cq5A02
3RRPA 1J3UA 2HVGA 1U16A 1GK3A 1FURA 4V2RA 5D6BA 1Q5NA 2RJRA 1HY0A 4BABA 1AUWA 2QVEA 2PTQA 4V2QA 5EYVA 4C5RA 1T6PA 1RE5A 1K7WA 4HGVA 1TJWA 2FUSA 2PTSA 4C6GA 1YISA 2RJSA 4C5SA 2J91A 1GK2A 2QGAB 4CQ5A 1C3UA 4NSLA 1FUQA 5F91A 1EB4A 1I0AA 3BHGA 1TJUA 2OHYA 2NYNA 1TJ7A 1XWOA 4EEIA 2PFMA 3R6VA 3R6QA 1GKMA 1C3CA 5EYTA 3KDYA 3CZOA 3KDZA 5F92A 2E9FA 2O7EA 1KQ7A 1FUOA 2O7DA 4NLEA 2O7BA 2YIIA 1YFEA 1VDKA 1W27A 4ADLA 4APAA 3GTDA 4EFCA 4FLCA 5HW2A 2VD6A 2O6YA 2PTRA 1FUPA 2X75A 4ADMA 4BAAA 1JSWA 1U15A 4APBA 4C5UA 3OCFA 3C8TA 3NO9A 3OCEA 3E04A 1TJVA 3R6YA 4FFXA 1K62A 2O7FA 1T6JA 2NYFA 3NZ4A 1Y2MA 1DOFA 3UNVA 4MX2A 3GZHA 3QBPA 3RD8A 2O78A 1B8FA 1DCNA 1YFMA 3TV2A 1HY1A 1GKJA
chains in the Genus database with same CATH superfamily
3RRPA 2AQLA 1J3UA 2HVGA 2VK9A 3CRW1 2MP0A 2A6ED 2VSFA 3LRDA 1K83A 2FIOA 1U16A 2RJSA 3CRVA 2JA7A 1GK3A 2X0OA 4V2RA 1FURA 5D6BA 2K3OA 2LKMB 2MX9A 1XL8A 1SFOA 1Q5NA 3EZBA 2RJRA 1HY0A 4BABA 1SMYD 1AUWA 2QVEA 4WNLA 2EZBA 2PTQA 1EZBA 4V2QA 3GTKA 2VL7A 3LR2A 4CEIA 5EYVA 4CEHA 4C5RA 2Y0NA 1T6PA 1TWFA 3EZEA 1RE5A 3H0GA 1K7WA 4HGVA 1TJWA 2FUSA 2PTSA 1I50A 5M0IA 4C6GA 1YISA 1IW7D 4C5SA 4CEJA 1TWAA 3GTQA 1GK2A 2J91A 1YNND 1Y1VA 2QGAB 4CQ5A 1C3UA 4NSLA 1FUQA 5F91A 2O5JD 1EB4A 1I0AA 3BHGA 1ZYRD 1TJUA 1YNJD 2OHYA 1R9TA 5H8WA 1XL7A 2NYNA 1TJ7A 1XWOA 2CW0D 2A6HD 4EEIA 3CQZA 3GTPA 3LR6A 2PFMA 2NVYA 2JA5A 3R6VA 1I6VD 1XLYA 3GTLA 2LPIA 3U44A 3R6QA 1TWCA 2YU9A 5IZ2A 1EZAA 1TWGA 2E2IA 1GKMA 2F5JA 1C3CA 5EYTA 3GTOA 2MX8A 2HWGA 2X0QA 3CZOA 3KDYA 4A15A 3GTJA 3KDZA 5F92A 2BE5D 5M0JA 3LR8A 2LTHA 2E9FA 2O7EA 2N3EA 1KQ7A 1FUOA 2O7DA 4NLEA 2EZCA 2O7BA 2YIIA 3EZAA 1I3QA 1Y1WA 2B63A 1VDKA 1W27A 1YFEA 2E2HA 4ADLA 2FELA 4QIWA 4APAA 3GTDA 2FENA 1HQMD 3FKIA 4FLCA 2R92A 4EFCA 2R7ZA 5HW2A 2VD6A 1XMCA 2O6YA 2PTRA 2X0PA 2EZAA 2MQAA 1FUPA 2X75A 4ADMA 1JSWA 1U15A 4APBA 4C5UA 3OCFA 1HY1A 3C8TA 2A68D 3NO9A 3OCEA 3E04A 3U4QA 1TJVA 3R6YA 4FFXA 1K62A 2O7FA 1T6JA 2NYFA 3NZ4A 1Y2MA 1DOFA 2JA6A 3GTGA 3GTMA 4FBSA 2K3NA 1GKJA 4MX2A 3GZHA 3UNVA 3QBPA 2FIPA 2VUMA 3RD8A 2LPJA 1XMDA 2A69D 4C2MA 2O78A 2N1DB 2K3QA 1B8FA 1ZYMA 1DCNA 2R93A 1YFMA 1WCMA 1TWHA 3TV2A 2NVXA 2LYIA 2HROA 4BAAA
chains in the Genus database with same CATH topology
3RRPA 1J3UA 2HVGA 1U16A 1GK3A 1FURA 4V2RA 5D6BA 1Q5NA 2RJRA 1HY0A 4BABA 1AUWA 2QVEA 2PTQA 4V2QA 5EYVA 4C5RA 1T6PA 1RE5A 1K7WA 4HGVA 1TJWA 2FUSA 2PTSA 4C6GA 1YISA 2RJSA 4C5SA 2J91A 1GK2A 2QGAB 4CQ5A 1C3UA 4NSLA 1FUQA 5F91A 1EB4A 1I0AA 3BHGA 1TJUA 2OHYA 2NYNA 1TJ7A 1XWOA 4EEIA 2PFMA 3R6VA 3R6QA 1GKMA 1C3CA 5EYTA 3KDYA 3CZOA 3KDZA 5F92A 2E9FA 2O7EA 1KQ7A 1FUOA 2O7DA 4NLEA 2O7BA 2YIIA 1YFEA 1VDKA 1W27A 4ADLA 4APAA 3GTDA 4EFCA 4FLCA 5HW2A 2VD6A 2O6YA 2PTRA 1FUPA 2X75A 4ADMA 4BAAA 1JSWA 1U15A 4APBA 4C5UA 3OCFA 3C8TA 3NO9A 3OCEA 3E04A 1TJVA 3R6YA 4FFXA 1K62A 2O7FA 1T6JA 2NYFA 3NZ4A 1Y2MA 1DOFA 3UNVA 4MX2A 3GZHA 3QBPA 3RD8A 2O78A 1B8FA 1DCNA 1YFMA 3TV2A 1HY1A 1GKJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3RRP A;  1J3U A;  2HVG A;  1U16 A;  1GK3 A;  1FUR A;  4V2R A;  5D6B A;  1Q5N A;  2RJR A;  1HY0 A;  4BAB A;  1AUW A;  2QVE A;  2PTQ A;  4V2Q A;  5EYV A;  4C5R A;  1T6P A;  1RE5 A;  1K7W A;  4HGV A;  1TJW A;  2FUS A;  2PTS A;  4C6G A;  1YIS A;  2RJS A;  4C5S A;  2J91 A;  1GK2 A;  2QGA B;  4CQ5 A;  1C3U A;  4NSL A;  1FUQ A;  5F91 A;  1EB4 A;  1I0A A;  3BHG A;  1TJU A;  2OHY A;  2NYN A;  1TJ7 A;  1XWO A;  4EEI A;  2PFM A;  3R6V A;  3R6Q A;  1GKM A;  1C3C A;  5EYT A;  3KDY A;  3CZO A;  3KDZ A;  5F92 A;  2E9F A;  2O7E A;  1KQ7 A;  1FUO A;  2O7D A;  4NLE A;  2O7B A;  2YII A;  1YFE A;  1VDK A;  1W27 A;  4ADL A;  4APA A;  3GTD A;  4EFC A;  4FLC A;  5HW2 A;  2VD6 A;  2O6Y A;  2PTR A;  1FUP A;  2X75 A;  4ADM A;  4BAA A;  1JSW A;  1U15 A;  4APB A;  4C5U A;  3OCF A;  3C8T A;  3NO9 A;  3OCE A;  3E04 A;  1TJV A;  3R6Y A;  4FFX A;  1K62 A;  2O7F A;  1T6J A;  2NYF A;  3NZ4 A;  1Y2M A;  1DOF A;  3UNV A;  4MX2 A;  3GZH A;  3QBP A;  3RD8 A;  2O78 A;  1B8F A;  1DCN A;  1YFM A;  3TV2 A;  1HY1 A;  1GKJ A; 
#chains in the Genus database with same CATH topology
 3RRP A;  2AQL A;  1J3U A;  2HVG A;  2VK9 A;  3CRW 1;  2MP0 A;  2A6E D;  2VSF A;  3LRD A;  1K83 A;  2FIO A;  1U16 A;  2RJS A;  3CRV A;  2JA7 A;  1GK3 A;  2X0O A;  4V2R A;  1FUR A;  5D6B A;  2K3O A;  2LKM B;  2MX9 A;  1XL8 A;  1SFO A;  1Q5N A;  3EZB A;  2RJR A;  1HY0 A;  4BAB A;  1SMY D;  1AUW A;  2QVE A;  4WNL A;  2EZB A;  2PTQ A;  1EZB A;  4V2Q A;  3GTK A;  2VL7 A;  3LR2 A;  4CEI A;  5EYV A;  4CEH A;  4C5R A;  2Y0N A;  1T6P A;  1TWF A;  3EZE A;  1RE5 A;  3H0G A;  1K7W A;  4HGV A;  1TJW A;  2FUS A;  2PTS A;  1I50 A;  5M0I A;  4C6G A;  1YIS A;  1IW7 D;  4C5S A;  4CEJ A;  1TWA A;  3GTQ A;  1GK2 A;  2J91 A;  1YNN D;  1Y1V A;  2QGA B;  4CQ5 A;  1C3U A;  4NSL A;  1FUQ A;  5F91 A;  2O5J D;  1EB4 A;  1I0A A;  3BHG A;  1ZYR D;  1TJU A;  1YNJ D;  2OHY A;  1R9T A;  5H8W A;  1XL7 A;  2NYN A;  1TJ7 A;  1XWO A;  2CW0 D;  2A6H D;  4EEI A;  3CQZ A;  3GTP A;  3LR6 A;  2PFM A;  2NVY A;  2JA5 A;  3R6V A;  1I6V D;  1XLY A;  3GTL A;  2LPI A;  3U44 A;  3R6Q A;  1TWC A;  2YU9 A;  5IZ2 A;  1EZA A;  1TWG A;  2E2I A;  1GKM A;  2F5J A;  1C3C A;  5EYT A;  3GTO A;  2MX8 A;  2HWG A;  2X0Q A;  3CZO A;  3KDY A;  4A15 A;  3GTJ A;  3KDZ A;  5F92 A;  2BE5 D;  5M0J A;  3LR8 A;  2LTH A;  2E9F A;  2O7E A;  2N3E A;  1KQ7 A;  1FUO A;  2O7D A;  4NLE A;  2EZC A;  2O7B A;  2YII A;  3EZA A;  1I3Q A;  1Y1W A;  2B63 A;  1VDK A;  1W27 A;  1YFE A;  2E2H A;  4ADL A;  2FEL A;  4QIW A;  4APA A;  3GTD A;  2FEN A;  1HQM D;  3FKI A;  4FLC A;  2R92 A;  4EFC A;  2R7Z A;  5HW2 A;  2VD6 A;  1XMC A;  2O6Y A;  2PTR A;  2X0P A;  2EZA A;  2MQA A;  1FUP A;  2X75 A;  4ADM A;  1JSW A;  1U15 A;  4APB A;  4C5U A;  3OCF A;  1HY1 A;  3C8T A;  2A68 D;  3NO9 A;  3OCE A;  3E04 A;  3U4Q A;  1TJV A;  3R6Y A;  4FFX A;  1K62 A;  2O7F A;  1T6J A;  2NYF A;  3NZ4 A;  1Y2M A;  1DOF A;  2JA6 A;  3GTG A;  3GTM A;  4FBS A;  2K3N A;  1GKJ A;  4MX2 A;  3GZH A;  3UNV A;  3QBP A;  2FIP A;  2VUM A;  3RD8 A;  2LPJ A;  1XMD A;  2A69 D;  4C2M A;  2O78 A;  2N1D B;  2K3Q A;  1B8F A;  1ZYM A;  1DCN A;  2R93 A;  1YFM A;  1WCM A;  1TWH A;  3TV2 A;  2NVX A;  2LYI A;  2HRO A;  4BAA A; 
#chains in the Genus database with same CATH homology
 3RRP A;  1J3U A;  2HVG A;  1U16 A;  1GK3 A;  1FUR A;  4V2R A;  5D6B A;  1Q5N A;  2RJR A;  1HY0 A;  4BAB A;  1AUW A;  2QVE A;  2PTQ A;  4V2Q A;  5EYV A;  4C5R A;  1T6P A;  1RE5 A;  1K7W A;  4HGV A;  1TJW A;  2FUS A;  2PTS A;  4C6G A;  1YIS A;  2RJS A;  4C5S A;  2J91 A;  1GK2 A;  2QGA B;  4CQ5 A;  1C3U A;  4NSL A;  1FUQ A;  5F91 A;  1EB4 A;  1I0A A;  3BHG A;  1TJU A;  2OHY A;  2NYN A;  1TJ7 A;  1XWO A;  4EEI A;  2PFM A;  3R6V A;  3R6Q A;  1GKM A;  1C3C A;  5EYT A;  3KDY A;  3CZO A;  3KDZ A;  5F92 A;  2E9F A;  2O7E A;  1KQ7 A;  1FUO A;  2O7D A;  4NLE A;  2O7B A;  2YII A;  1YFE A;  1VDK A;  1W27 A;  4ADL A;  4APA A;  3GTD A;  4EFC A;  4FLC A;  5HW2 A;  2VD6 A;  2O6Y A;  2PTR A;  1FUP A;  2X75 A;  4ADM A;  4BAA A;  1JSW A;  1U15 A;  4APB A;  4C5U A;  3OCF A;  3C8T A;  3NO9 A;  3OCE A;  3E04 A;  1TJV A;  3R6Y A;  4FFX A;  1K62 A;  2O7F A;  1T6J A;  2NYF A;  3NZ4 A;  1Y2M A;  1DOF A;  3UNV A;  4MX2 A;  3GZH A;  3QBP A;  3RD8 A;  2O78 A;  1B8F A;  1DCN A;  1YFM A;  3TV2 A;  1HY1 A;  1GKJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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