The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
174
|
sequence length |
568
|
structure length |
551
|
Chain Sequence |
QIKGIAASDGVAIAKAYLLVEPDLSFDNESVTDTDAEVAKFNGALNKSKVELTKIRNNAEKQLGADKAAIFDAHLLVLEDPELIQPIEDKIKNESVNAAQALTDVSNQFITIFESMDNEYMAERAADIRDVSKRVLAHILGVELPNPVVIIGNDLTPSDTAQLNKEYVQGFVTNIGSHSAIMSRSLEIPAVGTKSITEEVEAGDIVVDDVLPSDEVIAEYQEKRENFFKDKQELQKLRDAESVTADGHHVELAANIGTPNDLPGVIENGAEGIGLYRTEFLYMGRDQMPTEEEQFEAYKAVLEAMKGKRVVVRTLDIGGDKELPYLDLPEEMNPFLGYRAIRLCLDQPEIFRPQLRALLRASVFGKLNIMFPMVATIQEFRDAKALLEEERANLKNEGYEVADDIELGIMVEIPSTAALADIFAKEVDFFSIGTNDLIQYTMAADRMSERVSYLYQPYNPAILRLVKQVIEASHAEGKWTGMCGEMAGDQTAIPLLLGLGLDEFSMSATSILKARRLIRSLNESEMKELSERAVQCATSEEVVDLVEEYTK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule keywords |
Phosphoenolpyruvate-protein phosphotransferase
|
| publication title |
Structure of the full-length enzyme I of the phosphoenolpyruvate-dependent sugar phosphotransferase system
pubmed doi rcsb |
| source organism |
Staphylococcus carnosus
|
| molecule tags |
Transferase
|
| total genus |
174
|
| structure length |
551
|
| sequence length |
568
|
| ec nomenclature |
ec
2.7.3.9: Phosphoenolpyruvate--protein phosphotransferase. |
| pdb deposition date | 2006-07-20 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00391 | PEP-utilizers | PEP-utilising enzyme, mobile domain |
| A | PF02896 | PEP-utilizers_C | PEP-utilising enzyme, TIM barrel domain |
| A | PF05524 | PEP-utilisers_N | PEP-utilising enzyme, N-terminal |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Enzyme I; Chain A, domain 2 | PtsI, HPr-binding domain | ||
| Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Phosphoenolpyruvate-binding domains | ||
| Alpha Beta | 3-Layer(bba) Sandwich | Glucose Oxidase; domain 1 | Phosphohistidine domain |
