5IZ2A

Crystal structure of the n. clavipes spidroin ntd at ph 6.5
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
123
structure length
119
Chain Sequence
QNTPWSSTELADAFINAFMNEAGRTGAFTADQLDDMSTIGDTIKTAMDKMARSNKSSKGKLQALNMAFASSMAEIAAGLSVDAKTNAIADSLNSAFYQTTGAANPQFVNEIRSLINMFA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords Major ampullate spidroin 1A
publication title Crystal Structure of the Nephila clavipes Major Ampullate Spidroin 1A N-terminal Domain Reveals Plasticity at the Dimer Interface.
pubmed doi rcsb
source organism Nephila clavipes
total genus 46
structure length 119
sequence length 123
chains with identical sequence B
ec nomenclature
pdb deposition date 2016-03-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16763 Spidroin_N Major ampullate spidroin 1, spider silk protein 1, N-term
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.70 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Enzyme I; Chain A, domain 2 5iz2A01
2LTHA 2MX8A 3LR2A 2LPIA 2K3QA 4FBSA 3LR6A 5IZ2A 3LR8A 3LRDA 2MX9A 2N3EA 2LPJA
chains in the Genus database with same CATH superfamily
4CQ5A 4BABA 4C5SA 3LR8A 2R92A 2LKMB 4C2MA 1EZAA 2FIPA 2EZBA 1Y2MA 2F5JA 2AQLA 3CQZA 2LPJA 2HROA 4V2RA 1I6VD 3GTOA 2FIOA 2BE5D 3GTGA 1YNJD 1T6JA 1ZYMA 4C5RA 3U4QA 1I3QA 3LRDA 1EZBA 4CEIA 3GTJA 4CEJA 2K3QA 3GTMA 3EZBA 3LR6A 3NZ4A 3U44A 1TWGA 2E2IA 1I50A 2NVYA 2N3EA 4FBSA 2VK9A 3EZAA 3GTPA 1ZYRD 2JA7A 1Y1VA 2X0PA 3GTQA 2CW0D 2LTHA 1WCMA 3FKIA 1TWHA 3EZEA 5IZ2A 2YU9A 4QIWA 4V2QA 2VUMA 2NVXA 2X0QA 2MQAA 2MX8A 2MP0A 1W27A 1SMYD 2LPIA 2N1DB 4C5UA 1R9TA 2EZAA 2LYIA 2A69D 3LR2A 2EZCA 1HQMD 1K83A 2YIIA 2MX9A 2JA5A 2Y0NA 2R93A 2K3OA 1TWCA 2X0OA 2O5JD 1TWFA 1SFOA 3GTKA 2E2HA 2A6HD 2R7ZA 2JA6A 2K3NA 1YNND 1Y1WA 3H0GA 1TWAA 2A6ED 4CEHA 2B63A 1IW7D 4C6GA 1T6PA 2HWGA 4BAAA 3GTLA 2A68D
chains in the Genus database with same CATH topology
3LR8A 2R92A 2LKMB 4C2MA 2FIPA 2F5JA 2AQLA 3CQZA 2LPJA 1I6VD 3GTOA 2FIOA 2BE5D 3GTGA 1YNJD 3U4QA 1I3QA 3LRDA 4CEIA 3GTJA 4CEJA 2K3QA 3GTMA 3LR6A 3U44A 1TWGA 2E2IA 1I50A 2NVYA 2N3EA 4FBSA 2VK9A 3GTPA 1ZYRD 2JA7A 1Y1VA 2X0PA 3GTQA 2CW0D 2LTHA 1WCMA 3FKIA 1TWHA 5IZ2A 2YU9A 4QIWA 2VUMA 2NVXA 2X0QA 2MQAA 2MX8A 1SMYD 2LPIA 2N1DB 1R9TA 2LYIA 2A69D 3LR2A 1HQMD 1K83A 2MX9A 2JA5A 2R93A 2Y0NA 2K3OA 1TWCA 2X0OA 2O5JD 1TWFA 1SFOA 3GTKA 2E2HA 2A6HD 2R7ZA 2JA6A 2K3NA 1YNND 1Y1WA 3H0GA 1TWAA 2A6ED 4CEHA 2B63A 1IW7D 3GTLA 2A68D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LTH A;  2MX8 A;  3LR2 A;  2LPI A;  2K3Q A;  4FBS A;  3LR6 A;  5IZ2 A;  3LR8 A;  3LRD A;  2MX9 A;  2N3E A;  2LPJ A; 
#chains in the Genus database with same CATH topology
 4CQ5 A;  4BAB A;  4C5S A;  3LR8 A;  2R92 A;  2LKM B;  4C2M A;  1EZA A;  2FIP A;  2EZB A;  1Y2M A;  2F5J A;  2AQL A;  3CQZ A;  2LPJ A;  2HRO A;  4V2R A;  1I6V D;  3GTO A;  2FIO A;  2BE5 D;  3GTG A;  1YNJ D;  1T6J A;  1ZYM A;  4C5R A;  3U4Q A;  1I3Q A;  3LRD A;  1EZB A;  4CEI A;  3GTJ A;  4CEJ A;  2K3Q A;  3GTM A;  3EZB A;  3LR6 A;  3NZ4 A;  3U44 A;  1TWG A;  2E2I A;  1I50 A;  2NVY A;  2N3E A;  4FBS A;  2VK9 A;  3EZA A;  3GTP A;  1ZYR D;  2JA7 A;  1Y1V A;  2X0P A;  3GTQ A;  2CW0 D;  2LTH A;  1WCM A;  3FKI A;  1TWH A;  3EZE A;  5IZ2 A;  2YU9 A;  4QIW A;  4V2Q A;  2VUM A;  2NVX A;  2X0Q A;  2MQA A;  2MX8 A;  2MP0 A;  1W27 A;  1SMY D;  2LPI A;  2N1D B;  4C5U A;  1R9T A;  2EZA A;  2LYI A;  2A69 D;  3LR2 A;  2EZC A;  1HQM D;  1K83 A;  2YII A;  2MX9 A;  2JA5 A;  2Y0N A;  2R93 A;  2K3O A;  1TWC A;  2X0O A;  2O5J D;  1TWF A;  1SFO A;  3GTK A;  2E2H A;  2A6H D;  2R7Z A;  2JA6 A;  2K3N A;  1YNN D;  1Y1W A;  3H0G A;  1TWA A;  2A6E D;  4CEH A;  2B63 A;  1IW7 D;  4C6G A;  1T6P A;  2HWG A;  4BAA A;  3GTL A;  2A68 D; 
#chains in the Genus database with same CATH homology
 3LR8 A;  2R92 A;  2LKM B;  4C2M A;  2FIP A;  2F5J A;  2AQL A;  3CQZ A;  2LPJ A;  1I6V D;  3GTO A;  2FIO A;  2BE5 D;  3GTG A;  1YNJ D;  3U4Q A;  1I3Q A;  3LRD A;  4CEI A;  3GTJ A;  4CEJ A;  2K3Q A;  3GTM A;  3LR6 A;  3U44 A;  1TWG A;  2E2I A;  1I50 A;  2NVY A;  2N3E A;  4FBS A;  2VK9 A;  3GTP A;  1ZYR D;  2JA7 A;  1Y1V A;  2X0P A;  3GTQ A;  2CW0 D;  2LTH A;  1WCM A;  3FKI A;  1TWH A;  5IZ2 A;  2YU9 A;  4QIW A;  2VUM A;  2NVX A;  2X0Q A;  2MQA A;  2MX8 A;  1SMY D;  2LPI A;  2N1D B;  1R9T A;  2LYI A;  2A69 D;  3LR2 A;  1HQM D;  1K83 A;  2MX9 A;  2JA5 A;  2R93 A;  2Y0N A;  2K3O A;  1TWC A;  2X0O A;  2O5J D;  1TWF A;  1SFO A;  3GTK A;  2E2H A;  2A6H D;  2R7Z A;  2JA6 A;  2K3N A;  1YNN D;  1Y1W A;  3H0G A;  1TWA A;  2A6E D;  4CEH A;  2B63 A;  1IW7 D;  3GTL A;  2A68 D; 
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similar chains in the pdb database (?% sequence similarity)

 
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