2MX9A

Nmr structure of n-terminal domain from a. ventricosus minor ampullate spidroin (misp) at ph 5.5
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
133
structure length
133
Chain Sequence
GSGNSQPIWTNPNAAMTMTNNLVQCASRSGVLTADQMDDMGMMADSVNSQMQKMGPNPPQHRLRAMNTAMAAEVAEVVATSPPQSYSAVLNTIGACLRESMMQATGSVDNAFTNEVMQLVKMLSADSANEVST
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
source organism Araneus ventricosus
publication title Diversified Structural Basis of a Conserved Molecular Mechanism for pH-Dependent Dimerization in Spider Silk N-Terminal Domains.
pubmed doi rcsb
molecule keywords Minor ampullate spidroin
total genus 45
structure length 133
sequence length 133
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-12-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16763 Spidroin_N Major ampullate spidroin 1, spider silk protein 1, N-term
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.70 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Enzyme I; Chain A, domain 2 2mx9A01
3LR8A 2LPIA 3LRDA 2LPJA 2K3QA 3LR2A 2LTHA 2N3EA 3LR6A 4FBSA 2MX8A 2MX9A 5IZ2A
chains in the Genus database with same CATH superfamily
1I3QA 2JA6A 3GTGA 1T6JA 1Y1VA 2NVYA 2K3QA 2N1DB 1TWAA 1YNND 3U4QA 2VK9A 1TWCA 1YNJD 2JA7A 2B63A 2AQLA 2VUMA 4V2RA 1TWGA 2YIIA 4CQ5A 4C5RA 2X0PA 3EZBA 4CEIA 2X0OA 2HWGA 3EZEA 3GTQA 2K3OA 1SFOA 2HROA 3CQZA 3GTJA 2LTHA 2R7ZA 3GTKA 2O5JD 2LPIA 2YU9A 2E2HA 2MQAA 1I6VD 3EZAA 4QIWA 4C6GA 1R9TA 2LKMB 2EZBA 3U44A 2A69D 1Y1WA 4C2MA 2R93A 2A68D 2E2IA 2F5JA 1IW7D 4BABA 4C5SA 3GTLA 2EZCA 2JA5A 2N3EA 4BAAA 2BE5D 1I50A 4FBSA 1ZYRD 2MP0A 1W27A 2LPJA 2X0QA 4CEJA 1SMYD 4V2QA 1HQMD 2R92A 4C5UA 1Y2MA 2Y0NA 2FIPA 3GTOA 1T6PA 2MX9A 3H0GA 5IZ2A 1K83A 2EZAA 2MX8A 3NZ4A 2A6HD 3LR8A 1EZBA 3FKIA 3GTPA 2LYIA 2NVXA 3GTMA 1TWFA 2K3NA 2FIOA 2A6ED 3LRDA 1EZAA 1TWHA 3LR2A 1WCMA 1ZYMA 3LR6A 4CEHA 2CW0D
chains in the Genus database with same CATH topology
1I3QA 2JA6A 3GTGA 1Y1VA 2NVYA 2K3QA 2N1DB 1TWAA 1YNND 3U4QA 2VK9A 1TWCA 1YNJD 2JA7A 2B63A 2AQLA 2VUMA 1TWGA 2X0PA 4CEIA 2X0OA 3GTQA 2K3OA 1SFOA 3GTJA 3CQZA 2LTHA 2R7ZA 3GTKA 2O5JD 2LPIA 2YU9A 2E2HA 2MQAA 1I6VD 4QIWA 1R9TA 2LKMB 3U44A 2A69D 1Y1WA 4C2MA 2R93A 2A68D 2E2IA 2F5JA 1IW7D 3GTLA 2JA5A 2N3EA 2BE5D 1I50A 4FBSA 1ZYRD 2LPJA 2X0QA 4CEJA 1SMYD 1HQMD 2R92A 2Y0NA 2FIPA 3GTOA 2MX9A 3H0GA 5IZ2A 1K83A 2MX8A 2A6HD 3LR8A 3FKIA 3GTPA 2LYIA 2NVXA 3GTMA 1TWFA 2K3NA 2FIOA 2A6ED 3LRDA 1TWHA 3LR2A 1WCMA 3LR6A 4CEHA 2CW0D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LR8 A;  2LPI A;  3LRD A;  2LPJ A;  2K3Q A;  3LR2 A;  2LTH A;  2N3E A;  3LR6 A;  4FBS A;  2MX8 A;  2MX9 A;  5IZ2 A; 
#chains in the Genus database with same CATH topology
 1I3Q A;  2JA6 A;  3GTG A;  1T6J A;  1Y1V A;  2NVY A;  2K3Q A;  2N1D B;  1TWA A;  1YNN D;  3U4Q A;  2VK9 A;  1TWC A;  1YNJ D;  2JA7 A;  2B63 A;  2AQL A;  2VUM A;  4V2R A;  1TWG A;  2YII A;  4CQ5 A;  4C5R A;  2X0P A;  3EZB A;  4CEI A;  2X0O A;  2HWG A;  3EZE A;  3GTQ A;  2K3O A;  1SFO A;  2HRO A;  3CQZ A;  3GTJ A;  2LTH A;  2R7Z A;  3GTK A;  2O5J D;  2LPI A;  2YU9 A;  2E2H A;  2MQA A;  1I6V D;  3EZA A;  4QIW A;  4C6G A;  1R9T A;  2LKM B;  2EZB A;  3U44 A;  2A69 D;  1Y1W A;  4C2M A;  2R93 A;  2A68 D;  2E2I A;  2F5J A;  1IW7 D;  4BAB A;  4C5S A;  3GTL A;  2EZC A;  2JA5 A;  2N3E A;  4BAA A;  2BE5 D;  1I50 A;  4FBS A;  1ZYR D;  2MP0 A;  1W27 A;  2LPJ A;  2X0Q A;  4CEJ A;  1SMY D;  4V2Q A;  1HQM D;  2R92 A;  4C5U A;  1Y2M A;  2Y0N A;  2FIP A;  3GTO A;  1T6P A;  2MX9 A;  3H0G A;  5IZ2 A;  1K83 A;  2EZA A;  2MX8 A;  3NZ4 A;  2A6H D;  3LR8 A;  1EZB A;  3FKI A;  3GTP A;  2LYI A;  2NVX A;  3GTM A;  1TWF A;  2K3N A;  2FIO A;  2A6E D;  3LRD A;  1EZA A;  1TWH A;  3LR2 A;  1WCM A;  1ZYM A;  3LR6 A;  4CEH A;  2CW0 D; 
#chains in the Genus database with same CATH homology
 1I3Q A;  2JA6 A;  3GTG A;  1Y1V A;  2NVY A;  2K3Q A;  2N1D B;  1TWA A;  1YNN D;  3U4Q A;  2VK9 A;  1TWC A;  1YNJ D;  2JA7 A;  2B63 A;  2AQL A;  2VUM A;  1TWG A;  2X0P A;  4CEI A;  2X0O A;  3GTQ A;  2K3O A;  1SFO A;  3GTJ A;  3CQZ A;  2LTH A;  2R7Z A;  3GTK A;  2O5J D;  2LPI A;  2YU9 A;  2E2H A;  2MQA A;  1I6V D;  4QIW A;  1R9T A;  2LKM B;  3U44 A;  2A69 D;  1Y1W A;  4C2M A;  2R93 A;  2A68 D;  2E2I A;  2F5J A;  1IW7 D;  3GTL A;  2JA5 A;  2N3E A;  2BE5 D;  1I50 A;  4FBS A;  1ZYR D;  2LPJ A;  2X0Q A;  4CEJ A;  1SMY D;  1HQM D;  2R92 A;  2Y0N A;  2FIP A;  3GTO A;  2MX9 A;  3H0G A;  5IZ2 A;  1K83 A;  2MX8 A;  2A6H D;  3LR8 A;  3FKI A;  3GTP A;  2LYI A;  2NVX A;  3GTM A;  1TWF A;  2K3N A;  2FIO A;  2A6E D;  3LRD A;  1TWH A;  3LR2 A;  1WCM A;  3LR6 A;  4CEH A;  2CW0 D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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